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Conserved domains on  [gi|1124221916|ref|WP_074524881|]
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MULTISPECIES: ribosome modulation factor [Photorhabdus]

Protein Classification

ribosome modulation factor( domain architecture ID 10014778)

ribosome modulation factor (RMF), during stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14563 PRK14563
ribosome modulation factor; Provisional
 1-55 4.42e-27

ribosome modulation factor; Provisional


:

Pssm-ID: 184747  Cd Length: 55  Bit Score: 91.66  E-value: 4.42e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDRATMA 55
Cdd:PRK14563   1 MKRQKRDRLERAFSRGYQAGIAGRSKEMCPYQTLDARSQWLGGWREAMEDRVVGL 55
 
Name Accession Description Interval E-value
PRK14563 PRK14563
ribosome modulation factor; Provisional
 1-55 4.42e-27

ribosome modulation factor; Provisional


Pssm-ID: 184747  Cd Length: 55  Bit Score: 91.66  E-value: 4.42e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDRATMA 55
Cdd:PRK14563   1 MKRQKRDRLERAFSRGYQAGIAGRSKEMCPYQTLDARSQWLGGWREAMEDRVVGL 55
Rmf COG3130
Ribosome modulation factor [Translation, ribosomal structure and biogenesis];
1-51 8.91e-26

Ribosome modulation factor [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442364  Cd Length: 57  Bit Score: 88.42  E-value: 8.91e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDR 51
Cdd:COG3130    1 MKRQKRDRLERAYQRGYQAGVTGRSKELCPYQGDVARSAWLGGWREGREDR 51
RMF pfam04957
Ribosome modulation factor; This protein associates with 70s ribosomes and converts them to a ...
 1-53 1.01e-24

Ribosome modulation factor; This protein associates with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia coli cells.


Pssm-ID: 428219  Cd Length: 54  Bit Score: 85.77  E-value: 1.01e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDRAT 53
Cdd:pfam04957  1 MKRQKRDRLERAFSRGYQAGIAGRSKELCPYQTLDARQHWLGGWREGREDRWD 53
 
Name Accession Description Interval E-value
PRK14563 PRK14563
ribosome modulation factor; Provisional
 1-55 4.42e-27

ribosome modulation factor; Provisional


Pssm-ID: 184747  Cd Length: 55  Bit Score: 91.66  E-value: 4.42e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDRATMA 55
Cdd:PRK14563   1 MKRQKRDRLERAFSRGYQAGIAGRSKEMCPYQTLDARSQWLGGWREAMEDRVVGL 55
Rmf COG3130
Ribosome modulation factor [Translation, ribosomal structure and biogenesis];
1-51 8.91e-26

Ribosome modulation factor [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442364  Cd Length: 57  Bit Score: 88.42  E-value: 8.91e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDR 51
Cdd:COG3130    1 MKRQKRDRLERAYQRGYQAGVTGRSKELCPYQGDVARSAWLGGWREGREDR 51
RMF pfam04957
Ribosome modulation factor; This protein associates with 70s ribosomes and converts them to a ...
 1-53 1.01e-24

Ribosome modulation factor; This protein associates with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia coli cells.


Pssm-ID: 428219  Cd Length: 54  Bit Score: 85.77  E-value: 1.01e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1124221916  1 MKRQKRDRLARALSRGYHAGILGRPREHCPYYSLDARSHWLGGWRQAMEDRAT 53
Cdd:pfam04957  1 MKRQKRDRLERAFSRGYQAGIAGRSKELCPYQTLDARQHWLGGWREGREDRWD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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