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Conserved domains on  [gi|1120568499|ref|WP_073425352|]
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fibrobacter succinogenes major paralogous domain-containing protein [Fibrobacter sp. UWB7]

Protein Classification

fibrobacter succinogenes major paralogous domain-containing protein( domain architecture ID 10020264)

fibrobacter succinogenes major paralogous domain-containing protein is a putative lipoprotein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 286-456 1.89e-82

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


:

Pssm-ID: 273995  Cd Length: 171  Bit Score: 257.23  E-value: 1.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 286 TMTDPRDGKTYRTVKIGDQVWMAENLNYETEKSYCYNDSTEYCAMYGRFYEWNAAM-RACPEGWHLPLLEEFKTLVDALG 364
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMdSICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 365 DSAMAGSKLKSTSGWLNDLNGTDDYGFTVLPIGGKSASGKYINKEWLADFWSSTESAVEFAYVMHLGAYFNTAPLdMDEG 444
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 1120568499 445 KYNAFSVRCLQG 456
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 487-657 3.05e-72

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


:

Pssm-ID: 273995  Cd Length: 171  Bit Score: 230.65  E-value: 3.05e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 487 KLTDERNGQEYKTVKIGKQVWMAENLNYETDESYCYNDSAEYCTKYGRLYTWSAALN-ACPTGWHLPSQNEGMTLYYSVG 565
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDsICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 566 GRDTAAKMLKSVNGWNDDGTGTDSFGFSALPVGDRDEFNDYENEGRFAGFWTSTEVNERYAAHIHLFYMDDDAALsTTFN 645
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 1120568499 646 KRYAYAVRCVKD 657
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
 
Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 286-456 1.89e-82

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 257.23  E-value: 1.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 286 TMTDPRDGKTYRTVKIGDQVWMAENLNYETEKSYCYNDSTEYCAMYGRFYEWNAAM-RACPEGWHLPLLEEFKTLVDALG 364
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMdSICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 365 DSAMAGSKLKSTSGWLNDLNGTDDYGFTVLPIGGKSASGKYINKEWLADFWSSTESAVEFAYVMHLGAYFNTAPLdMDEG 444
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 1120568499 445 KYNAFSVRCLQG 456
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 487-657 3.05e-72

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 230.65  E-value: 3.05e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 487 KLTDERNGQEYKTVKIGKQVWMAENLNYETDESYCYNDSAEYCTKYGRLYTWSAALN-ACPTGWHLPSQNEGMTLYYSVG 565
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDsICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 566 GRDTAAKMLKSVNGWNDDGTGTDSFGFSALPVGDRDEFNDYENEGRFAGFWTSTEVNERYAAHIHLFYMDDDAALsTTFN 645
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 1120568499 646 KRYAYAVRCVKD 657
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 502-656 2.25e-44

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 156.46  E-value: 2.25e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 502 IGKQVWMAENLNYET------DESYCYNDSAEYCTKYGRLYTWSAALNA---CPTGWHLPSQNEGMTLYYSVGGRDTAAK 572
Cdd:pfam09603   1 IGGQYWMAENLRYATyrdgdpIETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 573 MLKSVNGWN--DDGTGTDSFGFSALPVGDRDE-FNDYENEGRFAGFWTSTEVNERYAAHI----HLFYMDDDAALSTTFN 645
Cdd:pfam09603  81 LLKATSGGPnlTVGNGTNETGFNALPAGYRDGdGSGFNADGKYAYFWTSTEDGSKGAEAGslgyRYFGLRRSVIRRGGAN 160

                         170
                  ....*....|.
gi 1120568499 646 KRYAYAVRCVK 656
Cdd:pfam09603 161 KGKGLSVRCVK 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 301-455 6.06e-41

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 146.83  E-value: 6.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 301 IGDQVWMAENLNYETE------KSYCYNDSTEYCAMYGRFYEWNAAMRA---CPEGWHLPLLEEFKTLVDALGDSAMAGS 371
Cdd:pfam09603   1 IGGQYWMAENLRYATYrdgdpiETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 372 KLKSTSGW--LNDLNGTDDYGFTVLPIGGKSASG---KYINKEwlADFWSSTESAVEFAYVMHLGAYFNTAPLDMD---- 442
Cdd:pfam09603  81 LLKATSGGpnLTVGNGTNETGFNALPAGYRDGDGsgfNADGKY--AYFWTSTEDGSKGAEAGSLGYRYFGLRRSVIrrgg 158

                         170
                  ....*....|...
gi 1120568499 443 EGKYNAFSVRCLQ 455
Cdd:pfam09603 159 ANKGKGLSVRCVK 171
 
Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 286-456 1.89e-82

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 257.23  E-value: 1.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 286 TMTDPRDGKTYRTVKIGDQVWMAENLNYETEKSYCYNDSTEYCAMYGRFYEWNAAM-RACPEGWHLPLLEEFKTLVDALG 364
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMdSICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 365 DSAMAGSKLKSTSGWLNDLNGTDDYGFTVLPIGGKSASGKYINKEWLADFWSSTESAVEFAYVMHLGAYFNTAPLdMDEG 444
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 1120568499 445 KYNAFSVRCLQG 456
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 487-657 3.05e-72

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 230.65  E-value: 3.05e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 487 KLTDERNGQEYKTVKIGKQVWMAENLNYETDESYCYNDSAEYCTKYGRLYTWSAALN-ACPTGWHLPSQNEGMTLYYSVG 565
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDsICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 566 GRDTAAKMLKSVNGWNDDGTGTDSFGFSALPVGDRDEFNDYENEGRFAGFWTSTEVNERYAAHIHLFYMDDDAALsTTFN 645
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 1120568499 646 KRYAYAVRCVKD 657
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 502-656 2.25e-44

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 156.46  E-value: 2.25e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 502 IGKQVWMAENLNYET------DESYCYNDSAEYCTKYGRLYTWSAALNA---CPTGWHLPSQNEGMTLYYSVGGRDTAAK 572
Cdd:pfam09603   1 IGGQYWMAENLRYATyrdgdpIETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 573 MLKSVNGWN--DDGTGTDSFGFSALPVGDRDE-FNDYENEGRFAGFWTSTEVNERYAAHI----HLFYMDDDAALSTTFN 645
Cdd:pfam09603  81 LLKATSGGPnlTVGNGTNETGFNALPAGYRDGdGSGFNADGKYAYFWTSTEDGSKGAEAGslgyRYFGLRRSVIRRGGAN 160

                         170
                  ....*....|.
gi 1120568499 646 KRYAYAVRCVK 656
Cdd:pfam09603 161 KGKGLSVRCVK 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 301-455 6.06e-41

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 146.83  E-value: 6.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 301 IGDQVWMAENLNYETE------KSYCYNDSTEYCAMYGRFYEWNAAMRA---CPEGWHLPLLEEFKTLVDALGDSAMAGS 371
Cdd:pfam09603   1 IGGQYWMAENLRYATYrdgdpiETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120568499 372 KLKSTSGW--LNDLNGTDDYGFTVLPIGGKSASG---KYINKEwlADFWSSTESAVEFAYVMHLGAYFNTAPLDMD---- 442
Cdd:pfam09603  81 LLKATSGGpnLTVGNGTNETGFNALPAGYRDGDGsgfNADGKY--AYFWTSTEDGSKGAEAGSLGYRYFGLRRSVIrrgg 158

                         170
                  ....*....|...
gi 1120568499 443 EGKYNAFSVRCLQ 455
Cdd:pfam09603 159 ANKGKGLSVRCVK 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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