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Conserved domains on  [gi|1120123364|ref|WP_072993795|]
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Fur family transcriptional regulator [Pseudozobellia thermophila]

Protein Classification

Fur family transcriptional regulator( domain architecture ID 10002362)

Fur (ferric uptake regulator) family transcriptional regulator such as metal ion uptake regulator proteins, which are responsible for controlling the intracellular concentration of iron in many bacteria

CATH:  3.30.1490.190|1.10.10.10
Gene Ontology:  GO:0006355|GO:0003700|GO:0003677|GO:0046872
PubMed:  17216355|24106689

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fur COG0735
Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];
1-142 7.23e-31

Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];


:

Pssm-ID: 440498  Cd Length: 140  Bit Score: 107.73  E-value: 7.23e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120123364   1 MVEIEKTLESKGVRPTAMRILVYKYMAQKETAVALTDIEHAFpsRPSGSGADRTTLYRTLKTFEEKGVVHHIDDGTGVSK 80
Cdd:COG0735     4 LEEAEELLREAGLRLTPQRLAILELLLESDRHLSAEEIYEAL--RKKGPSISLATVYRTLDLLVEAGLVHRIEFGGGKAR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1120123364  81 YALCEPgcncdleqDLHLHFHCKNCNETMCLTEHKIP----HISLPTGFVAEDANLVVAGTCDKCS 142
Cdd:COG0735    82 YELNEG--------DHHHHLICTKCGKVIELDDDEIEelleELAEPHGFEIESHELEIYGLCPDCQ 139
 
Name Accession Description Interval E-value
Fur COG0735
Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];
1-142 7.23e-31

Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];


Pssm-ID: 440498  Cd Length: 140  Bit Score: 107.73  E-value: 7.23e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120123364   1 MVEIEKTLESKGVRPTAMRILVYKYMAQKETAVALTDIEHAFpsRPSGSGADRTTLYRTLKTFEEKGVVHHIDDGTGVSK 80
Cdd:COG0735     4 LEEAEELLREAGLRLTPQRLAILELLLESDRHLSAEEIYEAL--RKKGPSISLATVYRTLDLLVEAGLVHRIEFGGGKAR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1120123364  81 YALCEPgcncdleqDLHLHFHCKNCNETMCLTEHKIP----HISLPTGFVAEDANLVVAGTCDKCS 142
Cdd:COG0735    82 YELNEG--------DHHHHLICTKCGKVIELDDDEIEelleELAEPHGFEIESHELEIYGLCPDCQ 139
Fur_like cd07153
Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, ...
 19-138 3.08e-15

Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.


Pssm-ID: 133478 [Multi-domain]  Cd Length: 116  Bit Score: 66.83  E-value: 3.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120123364  19 RILVYKYMAQKETAVALTDI-EHAfpsRPSGSGADRTTLYRTLKTFEEKGVVHHIDDGTGVSKYALCEPgcncdleqDLH 97
Cdd:cd07153     3 RLAILEVLLESDGHLTAEEIyERL---RKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELNTD--------EHH 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1120123364  98 LHFHCKNCNET----MCLTEHKIPHISLPTGFVAEDANLVVAGTC 138
Cdd:cd07153    72 HHLICTKCGKVidfeDCPLEELLEELAAKTGFKITSHRLELYGIC 116
FUR pfam01475
Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that ...
 54-108 9.84e-06

Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.


Pssm-ID: 426280  Cd Length: 121  Bit Score: 42.23  E-value: 9.84e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1120123364  54 TTLYRTLKTFEEKGVVHHIDDGTGVSKYALCEPgcncdleqDLHLHFHCKNCNET 108
Cdd:pfam01475  44 ATVYRTLNLLEEAGLVKRLEFDGGESRFELNTG--------HHHDHLICEDCGKV 90
 
Name Accession Description Interval E-value
Fur COG0735
Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];
1-142 7.23e-31

Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];


Pssm-ID: 440498  Cd Length: 140  Bit Score: 107.73  E-value: 7.23e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120123364   1 MVEIEKTLESKGVRPTAMRILVYKYMAQKETAVALTDIEHAFpsRPSGSGADRTTLYRTLKTFEEKGVVHHIDDGTGVSK 80
Cdd:COG0735     4 LEEAEELLREAGLRLTPQRLAILELLLESDRHLSAEEIYEAL--RKKGPSISLATVYRTLDLLVEAGLVHRIEFGGGKAR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1120123364  81 YALCEPgcncdleqDLHLHFHCKNCNETMCLTEHKIP----HISLPTGFVAEDANLVVAGTCDKCS 142
Cdd:COG0735    82 YELNEG--------DHHHHLICTKCGKVIELDDDEIEelleELAEPHGFEIESHELEIYGLCPDCQ 139
Fur_like cd07153
Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, ...
 19-138 3.08e-15

Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.


Pssm-ID: 133478 [Multi-domain]  Cd Length: 116  Bit Score: 66.83  E-value: 3.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120123364  19 RILVYKYMAQKETAVALTDI-EHAfpsRPSGSGADRTTLYRTLKTFEEKGVVHHIDDGTGVSKYALCEPgcncdleqDLH 97
Cdd:cd07153     3 RLAILEVLLESDGHLTAEEIyERL---RKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELNTD--------EHH 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1120123364  98 LHFHCKNCNET----MCLTEHKIPHISLPTGFVAEDANLVVAGTC 138
Cdd:cd07153    72 HHLICTKCGKVidfeDCPLEELLEELAAKTGFKITSHRLELYGIC 116
FUR pfam01475
Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that ...
 54-108 9.84e-06

Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.


Pssm-ID: 426280  Cd Length: 121  Bit Score: 42.23  E-value: 9.84e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1120123364  54 TTLYRTLKTFEEKGVVHHIDDGTGVSKYALCEPgcncdleqDLHLHFHCKNCNET 108
Cdd:pfam01475  44 ATVYRTLNLLEEAGLVKRLEFDGGESRFELNTG--------HHHDHLICEDCGKV 90
IclR COG1414
DNA-binding transcriptional regulator, IclR family [Transcription];
17-83 5.93e-03

DNA-binding transcriptional regulator, IclR family [Transcription];


Pssm-ID: 441024 [Multi-domain]  Cd Length: 253  Bit Score: 35.57  E-value: 5.93e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1120123364  17 AMRILvyKYMAQKETAVALTDIEHAfpsrpsgSGADRTTLYRTLKTFEEKGVVHHiDDGTGvsKYAL 83
Cdd:COG1414    11 ALAIL--EALAEAGGGLSLSELARR-------LGLPKSTVHRLLATLEEEGYVER-DPEGG--RYRL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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