|
Name |
Accession |
Description |
Interval |
E-value |
| PgpH |
COG1480 |
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms]; ... |
20-711 |
0e+00 |
|
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms];
Pssm-ID: 441089 [Multi-domain] Cd Length: 692 Bit Score: 854.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 20 NARSMHVLLYLLLAAIMFALLFVHVKPETLDLDLFSVSDKTIYAPATV--EDQKATEEKKQAAEDAVEDQYTLKKEYTDN 97
Cdd:COG1480 12 QSKLYRLLLFLLFVLLLTLLLFPKVGPFKYDLQVGQIAPEDIVAPRDFsyEDEEATEEEREEAAESVPPVYDLDPEVAEE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 98 RIDLVSSIFDSISEVKKSSEEgskSPSEKstvksvKDKLTSDVNDSISEDSIKTLLKADSEDFSFVRDTVITAVNTVMSS 177
Cdd:COG1480 92 VLEKLEELFDAIREIRSDAEL---SLEEK------VAELKERLGLSLSDEELETLLSLSDEDLQKLKEEILQILEEIYSE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 178 EIPSDKLSDAKDKVEKELKSNSIPSKYLGAAIEIGRFAIIPNYVFDPKATEAKRQEASDNVQQVQ--IKQGQVLVEENDL 255
Cdd:COG1480 163 GIREDDLETAREELRSQLESSDLSSELRNLLVELLRQLLKPNLVYDEEATEKAREEAAAAVEPVRgtIKKGEVIVRKGEV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 256 IDREVYRKLELTGLLNNS-NLFKPISGLLIMIGLFIATLVYYFEKQKQNLKFKNQSILLFSIITTLLLVIMEVVSLFqkm 334
Cdd:COG1480 243 VTEEQYEKLESLGLLRESgNNWLILLGLALLVLLLLLLLLLYLRRFRPEILRNNKKLLLLALIILLTLLLAKLVSLI--- 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 335 eYNNIGYLVPIAAGAILIKLLMNERIAILGSIILAICGSMMFNqgvtgtFNYVIGIYYLISGISGVLFLGKHNARSKILQ 414
Cdd:COG1480 320 -DSLLPYLVPVAAAPMLLAILFDARLALFVSVLLALLLGFIVG------NSFEFLLLQLIGGIVAILSVRRLRRRSDLFR 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 415 TGLFVAFINMVVVLSLLLIQNTALSgLEIGTLMLMGVVSGFASSVLIIGLMPFFETGFGILSTMRLLELSNPNHPLLRKI 494
Cdd:COG1480 393 AGLLIGLVNILVILALGLIQGGSLS-LEILWSLLLAFLNGLLSAILAIGLLPLLESLFGITTDIKLLELSNPNHPLLKRL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 495 LTETPGTYHHSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTKRPQYFIENQMNIDNPHDKLSPQLSKNIIISHTTDG 574
Cdd:COG1480 472 LLEAPGTYHHSLMVANLAEAAAEAIGANPLLARVGAYYHDIGKMKRPLYFIENQMGGENPHDKLSPSLSALIIISHVKDG 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 575 ANMLRSYKFPKELVDIAEQHHGTSLLKFFYYKAKE--KGDQITEEEFRYPGPKPQSKEAAIISVADSVEAAVRSMHNPNP 652
Cdd:COG1480 552 VELARKYKLPKEIIDFIRQHHGTTLVKYFYHKAKEenGGEEVDEEDFRYPGPKPQSKETAIVMLADSVEAAVRSLKEPTP 631
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636328 653 ERIEKLVRGIISDKLQDGQFSECDLTFKELDTIAKTLCATLKGIFHSRIEYPEATKKVK 711
Cdd:COG1480 632 EKIEGLVRKIIKDKLEDGQLDECDLTLKDLEKIKKSFVKVLTGIYHSRIEYPELKKKKK 690
|
|
| 7TMR-HDED |
pfam07697 |
7TM-HD extracellular; This entry represents the extracellular domain of the 7TM-HD (7TM ... |
52-271 |
4.73e-56 |
|
7TM-HD extracellular; This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase).
Pssm-ID: 462232 [Multi-domain] Cd Length: 219 Bit Score: 190.62 E-value: 4.73e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 52 DLFSVSDKTIYAP--ATVEDQKATEEKKQAAEDAVEDQYTLKKEYTDNRIDLVSSIFDSISEVKKSSEEGSKSPSEKSTV 129
Cdd:pfam07697 1 KVGDIAPQDIKAPrdIEVEDEEATEEKREEAAESVPPVYDLDPEVTEEVVQRLEELFDAIDEVRAATNSEEDLEEKIEQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 130 KsvkdKLTSDVNDSISEDSIKTLLKADSEDFSFVRDTVITAVNTVMSSEIPSDKLSDAKDKVEKELKsNSIPSKYLGAAI 209
Cdd:pfam07697 81 K----EALPFYLQSESDEELEALLNLSDEDLQELQDGILQILERILSQGIREDELEEAREAVAEQLK-ASLSSELRELAS 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636328 210 EIGRFAIIPNYVFDPKATEAKRQEASDNVQQV--QIKQGQVLVEENDLIDREVYRKLELTGLLN 271
Cdd:pfam07697 156 KLLSSVLKPNLFYDEEATEERREEAAEAVEPVmvKIKKGEVIVREGEIITEEQYEKLEALGLLR 219
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
160-572 |
2.80e-28 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 118.20 E-value: 2.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 160 FSFVRDTVITAVNTVMSSEI-PSDKLSDAKDKVEKELKSNSIPSKYLGAAieiGRFAIIPNYVFDPKATEAKRqeASDNV 238
Cdd:cd12082 3 PLLLSMLLQTLYNLVDTFFLgRLLGDALAAVGLAFPLIALLIALGVGLSV---GTSALISQAIGAGDEEKARR--VLVQS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 239 QQVQIKQGQVLVEENdLIDREVYRKLeltGLLNNSNLFKPISGLLIMIGLFIATLVYYFEKQKQNLKFKNQSILLFSIIT 318
Cdd:cd12082 78 IVLAILLGLLLAALL-LFFSPLILSL---LGAEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 319 TLLLVIMEVVSLFQK------MEYNNIGYLVPIAAGAILIKLLMNERIAILGSIILAI-----CGSMMFNQGVTGTFNYV 387
Cdd:cd12082 154 NLLNILLDPLLIFGLgppelgIAGAALATVISYVIGALLLLIYLRKGKKILKFKLSLLkpdleLLRRLLRIGLPSAIQNS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 388 IGIyylISGISGVLFLGKHNARSKILQTGLFVAFINMVVVLSLLLIQ-NTALSGLEIGTLMLMGVVSGFASSVLIIGLMP 466
Cdd:cd12082 234 LLS---LGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPALGLAQaALPVVGQNLGAGNFDRARRITWVALLIGLLIG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 467 FFETGFGILSTMRLLEL---SNPNHPLLRKILTETPGTYhHSVMVANLSEAACEAVGANGLLARVgaYYHDLGKTKRPQY 543
Cdd:cd12082 311 AVLGLLILLFPEPILSLftnDPEFLELAVSYLRILAIYY-LFVGIGYVLQAGFQAAGRTLKSLIV--SLLSYWVVRLPLA 387
|
410 420 430
....*....|....*....|....*....|.
gi 1119636328 544 FIENQ--MNIDNPHDKLSPQLSKNIIISHTT 572
Cdd:cd12082 388 YVLAYlgLGLYGIWLALVISLILAALVLLLF 418
|
|
| HDIG |
TIGR00277 |
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number ... |
497-597 |
3.36e-25 |
|
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. This model may annotate homologous domains in which one or more of the His residues is conserved but misaligned, and some probable false-positive hits.
Pssm-ID: 272994 [Multi-domain] Cd Length: 80 Bit Score: 99.33 E-value: 3.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 497 ETPGTYHHSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTKRPQYFienqmnidnphdklspqlsknIIISHTTDGAN 576
Cdd:TIGR00277 1 YGQNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPITREGV---------------------IFESHVVVGAE 59
|
90 100
....*....|....*....|.
gi 1119636328 577 MLRSYKFPKELVDIAEQHHGT 597
Cdd:TIGR00277 60 IARKYGEPLEVIDIIAEHHGK 80
|
|
| HDc |
smart00471 |
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ... |
497-648 |
5.61e-13 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Pssm-ID: 214679 [Multi-domain] Cd Length: 124 Bit Score: 66.17 E-value: 5.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 497 ETPGTYHHSVMVANLSEAACEAVGA-NGLLARVGAYYHDLGKTKRPQYFIENQMnidnphdklspqlsknIIISHTTDGA 575
Cdd:smart00471 1 SDYHVFEHSLRVAQLAAALAEELGLlDIELLLLAALLHDIGKPGTPDSFLVKTS----------------VLEDHHFIGA 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636328 576 NMLRSYKFPKELVDIA----EQHHgtsllkffyykakekgdqiteEEFRYPGPKPQSKEAAIISVADSVEAAVRSMH 648
Cdd:smart00471 65 EILLEEEEPRILEEILrtaiLSHH---------------------ERPDGLRGEPITLEARIVKVADRLDALRADRR 120
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
504-595 |
1.70e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 44.70 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 504 HSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTkrpqyfieNQMNIDNphdklspqlskniiiSHTTDGANMLRSYKF 583
Cdd:PRK12705 327 HSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS--------IDRESDG---------------NHVEIGAELARKFNE 383
|
90
....*....|..
gi 1119636328 584 PKELVDIAEQHH 595
Cdd:PRK12705 384 PDEVINAIASHH 395
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PgpH |
COG1480 |
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms]; ... |
20-711 |
0e+00 |
|
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms];
Pssm-ID: 441089 [Multi-domain] Cd Length: 692 Bit Score: 854.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 20 NARSMHVLLYLLLAAIMFALLFVHVKPETLDLDLFSVSDKTIYAPATV--EDQKATEEKKQAAEDAVEDQYTLKKEYTDN 97
Cdd:COG1480 12 QSKLYRLLLFLLFVLLLTLLLFPKVGPFKYDLQVGQIAPEDIVAPRDFsyEDEEATEEEREEAAESVPPVYDLDPEVAEE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 98 RIDLVSSIFDSISEVKKSSEEgskSPSEKstvksvKDKLTSDVNDSISEDSIKTLLKADSEDFSFVRDTVITAVNTVMSS 177
Cdd:COG1480 92 VLEKLEELFDAIREIRSDAEL---SLEEK------VAELKERLGLSLSDEELETLLSLSDEDLQKLKEEILQILEEIYSE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 178 EIPSDKLSDAKDKVEKELKSNSIPSKYLGAAIEIGRFAIIPNYVFDPKATEAKRQEASDNVQQVQ--IKQGQVLVEENDL 255
Cdd:COG1480 163 GIREDDLETAREELRSQLESSDLSSELRNLLVELLRQLLKPNLVYDEEATEKAREEAAAAVEPVRgtIKKGEVIVRKGEV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 256 IDREVYRKLELTGLLNNS-NLFKPISGLLIMIGLFIATLVYYFEKQKQNLKFKNQSILLFSIITTLLLVIMEVVSLFqkm 334
Cdd:COG1480 243 VTEEQYEKLESLGLLRESgNNWLILLGLALLVLLLLLLLLLYLRRFRPEILRNNKKLLLLALIILLTLLLAKLVSLI--- 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 335 eYNNIGYLVPIAAGAILIKLLMNERIAILGSIILAICGSMMFNqgvtgtFNYVIGIYYLISGISGVLFLGKHNARSKILQ 414
Cdd:COG1480 320 -DSLLPYLVPVAAAPMLLAILFDARLALFVSVLLALLLGFIVG------NSFEFLLLQLIGGIVAILSVRRLRRRSDLFR 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 415 TGLFVAFINMVVVLSLLLIQNTALSgLEIGTLMLMGVVSGFASSVLIIGLMPFFETGFGILSTMRLLELSNPNHPLLRKI 494
Cdd:COG1480 393 AGLLIGLVNILVILALGLIQGGSLS-LEILWSLLLAFLNGLLSAILAIGLLPLLESLFGITTDIKLLELSNPNHPLLKRL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 495 LTETPGTYHHSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTKRPQYFIENQMNIDNPHDKLSPQLSKNIIISHTTDG 574
Cdd:COG1480 472 LLEAPGTYHHSLMVANLAEAAAEAIGANPLLARVGAYYHDIGKMKRPLYFIENQMGGENPHDKLSPSLSALIIISHVKDG 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 575 ANMLRSYKFPKELVDIAEQHHGTSLLKFFYYKAKE--KGDQITEEEFRYPGPKPQSKEAAIISVADSVEAAVRSMHNPNP 652
Cdd:COG1480 552 VELARKYKLPKEIIDFIRQHHGTTLVKYFYHKAKEenGGEEVDEEDFRYPGPKPQSKETAIVMLADSVEAAVRSLKEPTP 631
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636328 653 ERIEKLVRGIISDKLQDGQFSECDLTFKELDTIAKTLCATLKGIFHSRIEYPEATKKVK 711
Cdd:COG1480 632 EKIEGLVRKIIKDKLEDGQLDECDLTLKDLEKIKKSFVKVLTGIYHSRIEYPELKKKKK 690
|
|
| 7TMR-HDED |
pfam07697 |
7TM-HD extracellular; This entry represents the extracellular domain of the 7TM-HD (7TM ... |
52-271 |
4.73e-56 |
|
7TM-HD extracellular; This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase).
Pssm-ID: 462232 [Multi-domain] Cd Length: 219 Bit Score: 190.62 E-value: 4.73e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 52 DLFSVSDKTIYAP--ATVEDQKATEEKKQAAEDAVEDQYTLKKEYTDNRIDLVSSIFDSISEVKKSSEEGSKSPSEKSTV 129
Cdd:pfam07697 1 KVGDIAPQDIKAPrdIEVEDEEATEEKREEAAESVPPVYDLDPEVTEEVVQRLEELFDAIDEVRAATNSEEDLEEKIEQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 130 KsvkdKLTSDVNDSISEDSIKTLLKADSEDFSFVRDTVITAVNTVMSSEIPSDKLSDAKDKVEKELKsNSIPSKYLGAAI 209
Cdd:pfam07697 81 K----EALPFYLQSESDEELEALLNLSDEDLQELQDGILQILERILSQGIREDELEEAREAVAEQLK-ASLSSELRELAS 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636328 210 EIGRFAIIPNYVFDPKATEAKRQEASDNVQQV--QIKQGQVLVEENDLIDREVYRKLELTGLLN 271
Cdd:pfam07697 156 KLLSSVLKPNLFYDEEATEERREEAAEAVEPVmvKIKKGEVIVREGEIITEEQYEKLEALGLLR 219
|
|
| 7TM-7TMR_HD |
pfam07698 |
7TM receptor with intracellular HD hydrolase; These bacterial 7TM receptor proteins have an ... |
276-476 |
3.24e-54 |
|
7TM receptor with intracellular HD hydrolase; These bacterial 7TM receptor proteins have an intracellular pfam01966. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Pssm-ID: 429603 [Multi-domain] Cd Length: 190 Bit Score: 184.29 E-value: 3.24e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 276 FKPISGLLIMIGLFIATLVYYFEKQKQNLKFKNQSILLFSIITTLLLVIMEVVSLFQkmeyNNIGYLVPIAAGAILIKLL 355
Cdd:pfam07698 1 WLPLLGLALLVLLLLAVLLLYLRRFRPELFRRNKDLLLLSLLLLLILLLSKLVSLIS----NSIPYLVPLAAGPMLLTIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 356 MNERIAILGSIILAICGSMMFNqgvtgtFNYVIGIYYLISGISGVLFLGKHNARSKILQTGLFVAFINMVVVLSLLLIQN 435
Cdd:pfam07698 77 LDSRLALVVSVLLALLLGIMFG------NNLEVILYALLSGLVGAYSVRRLRSRSDLLRAGLFVALVNVLLYLALGLISG 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1119636328 436 TALSgLEIGTLMLMGVVSGFASSVLIIGLMPFFETGFGILS 476
Cdd:pfam07698 151 NNFS-LEILTDLGLAFISGLLSSILAIGLLPLLESLFGIVT 190
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
160-572 |
2.80e-28 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 118.20 E-value: 2.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 160 FSFVRDTVITAVNTVMSSEI-PSDKLSDAKDKVEKELKSNSIPSKYLGAAieiGRFAIIPNYVFDPKATEAKRqeASDNV 238
Cdd:cd12082 3 PLLLSMLLQTLYNLVDTFFLgRLLGDALAAVGLAFPLIALLIALGVGLSV---GTSALISQAIGAGDEEKARR--VLVQS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 239 QQVQIKQGQVLVEENdLIDREVYRKLeltGLLNNSNLFKPISGLLIMIGLFIATLVYYFEKQKQNLKFKNQSILLFSIIT 318
Cdd:cd12082 78 IVLAILLGLLLAALL-LFFSPLILSL---LGAEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 319 TLLLVIMEVVSLFQK------MEYNNIGYLVPIAAGAILIKLLMNERIAILGSIILAI-----CGSMMFNQGVTGTFNYV 387
Cdd:cd12082 154 NLLNILLDPLLIFGLgppelgIAGAALATVISYVIGALLLLIYLRKGKKILKFKLSLLkpdleLLRRLLRIGLPSAIQNS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 388 IGIyylISGISGVLFLGKHNARSKILQTGLFVAFINMVVVLSLLLIQ-NTALSGLEIGTLMLMGVVSGFASSVLIIGLMP 466
Cdd:cd12082 234 LLS---LGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPALGLAQaALPVVGQNLGAGNFDRARRITWVALLIGLLIG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 467 FFETGFGILSTMRLLEL---SNPNHPLLRKILTETPGTYhHSVMVANLSEAACEAVGANGLLARVgaYYHDLGKTKRPQY 543
Cdd:cd12082 311 AVLGLLILLFPEPILSLftnDPEFLELAVSYLRILAIYY-LFVGIGYVLQAGFQAAGRTLKSLIV--SLLSYWVVRLPLA 387
|
410 420 430
....*....|....*....|....*....|.
gi 1119636328 544 FIENQ--MNIDNPHDKLSPQLSKNIIISHTT 572
Cdd:cd12082 388 YVLAYlgLGLYGIWLALVISLILAALVLLLF 418
|
|
| HDIG |
TIGR00277 |
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number ... |
497-597 |
3.36e-25 |
|
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. This model may annotate homologous domains in which one or more of the His residues is conserved but misaligned, and some probable false-positive hits.
Pssm-ID: 272994 [Multi-domain] Cd Length: 80 Bit Score: 99.33 E-value: 3.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 497 ETPGTYHHSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTKRPQYFienqmnidnphdklspqlsknIIISHTTDGAN 576
Cdd:TIGR00277 1 YGQNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPITREGV---------------------IFESHVVVGAE 59
|
90 100
....*....|....*....|.
gi 1119636328 577 MLRSYKFPKELVDIAEQHHGT 597
Cdd:TIGR00277 60 IARKYGEPLEVIDIIAEHHGK 80
|
|
| HDc |
cd00077 |
Metal dependent phosphohydrolases with conserved 'HD' motif |
499-663 |
5.32e-16 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif
Pssm-ID: 238032 [Multi-domain] Cd Length: 145 Bit Score: 75.45 E-value: 5.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 499 PGTYHHSVMVANLSEAACEAVGANGL---LARVGAYYHDLGKTKRPQYFIENQMNIDNPHDKLSPQLSKNIIIshttdga 575
Cdd:cd00077 1 EHRFEHSLRVAQLARRLAEELGLSEEdieLLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILRELLL------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 576 nmLRSYKFPKELVDIAEQHHGTSLLKFFYYKAKekgdqiteeefrypGPKPQSKEAAIISVADSVEAAVRSMHNPNPERI 655
Cdd:cd00077 74 --EEVIKLIDELILAVDASHHERLDGLGYPDGL--------------KGEEITLEARIVKLADRLDALRRDSREKRRRIA 137
|
....*...
gi 1119636328 656 EKLVRGII 663
Cdd:cd00077 138 EEDLEELL 145
|
|
| HDGYP |
COG2206 |
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal ... |
490-642 |
1.19e-15 |
|
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal transduction mechanisms];
Pssm-ID: 441808 [Multi-domain] Cd Length: 316 Bit Score: 78.48 E-value: 1.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 490 LLRKILTETPGTYHHSVMVANLSEAACEAVGANG---LLARVGAYYHDLGKTKRPQyfienqmNIDNPHDKLSPQlSKNI 566
Cdd:COG2206 133 LLAALDAKDPYTYGHSVRVAVLALALARELGLSEeelEDLGLAALLHDIGKIGIPD-------EILNKPGKLTDE-EFEI 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 567 IISHTTDGANMLRSYKFPKELVDIAEQHH----GTSllkffyYKAKEKGDQIteeefrypgpkpqSKEAAIISVADSVEA 642
Cdd:COG2206 205 IKKHPEYGYEILKKLPGLSEVAEIVLQHHerldGSG------YPRGLKGEEI-------------PLLARILAVADVYDA 265
|
|
| HDc |
smart00471 |
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ... |
497-648 |
5.61e-13 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Pssm-ID: 214679 [Multi-domain] Cd Length: 124 Bit Score: 66.17 E-value: 5.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 497 ETPGTYHHSVMVANLSEAACEAVGA-NGLLARVGAYYHDLGKTKRPQYFIENQMnidnphdklspqlsknIIISHTTDGA 575
Cdd:smart00471 1 SDYHVFEHSLRVAQLAAALAEELGLlDIELLLLAALLHDIGKPGTPDSFLVKTS----------------VLEDHHFIGA 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636328 576 NMLRSYKFPKELVDIA----EQHHgtsllkffyykakekgdqiteEEFRYPGPKPQSKEAAIISVADSVEAAVRSMH 648
Cdd:smart00471 65 EILLEEEEPRILEEILrtaiLSHH---------------------ERPDGLRGEPITLEARIVKVADRLDALRADRR 120
|
|
| HD |
pfam01966 |
HD domain; HD domains are metal dependent phosphohydrolases. |
501-643 |
9.13e-12 |
|
HD domain; HD domains are metal dependent phosphohydrolases.
Pssm-ID: 460398 [Multi-domain] Cd Length: 110 Bit Score: 62.25 E-value: 9.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 501 TYHHSVMVANLSEAACEAVG-ANGLLARVGAYYHDLGKTKRPQYFIEnqmnidnphdklspqlsKNIIISHTTDGANMLR 579
Cdd:pfam01966 1 RLEHSLRVALLARELAEELGeLDRELLLLAALLHDIGKGPFGDEKPE-----------------FEIFLGHAVVGAEILR 63
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636328 580 SYKFP---KELVDIAEQHHgtsllkffyykakekgdqitEEEFRYPGPKPQSKEAAIISVADSVEAA 643
Cdd:pfam01966 64 ELEKRlglEDVLKLILEHH--------------------ESWEGAGYPEEISLEARIVKLADRLDAL 110
|
|
| RnaY |
COG1418 |
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal ... |
489-668 |
5.59e-09 |
|
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only];
Pssm-ID: 441028 [Multi-domain] Cd Length: 191 Bit Score: 56.45 E-value: 5.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 489 PLLRKILTETPGTY-----HHSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTKrpqyfiENQMniDNPHDKLSPQLS 563
Cdd:COG1418 2 PELIKLVKYLRTSYgqhdlQHSLRVAKLAGLIAAEEGADVEVAKRAALLHDIGKAK------DHEV--EGSHAEIGAELA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 564 KNIIISHTTDGAnmlrsykFPKELVDIAEQHHGTSllkffyykakekgdqiteeefrypGPKPQSKEAAIISVADSVEA- 642
Cdd:COG1418 74 RKYLESLGFPEE-------EIEAVVHAIEAHSFSG------------------------GIEPESLEAKIVQDADRLDAl 122
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1119636328 643 --------------AVRSMHNPNPERI----EKLVRgiISDKLQ 668
Cdd:COG1418 123 gaigvarafaiggqAGRELRDPEDTAInhfyEKLLK--LKDLMA 164
|
|
| HDOD |
pfam08668 |
HDOD domain; |
475-595 |
2.74e-05 |
|
HDOD domain;
Pssm-ID: 430141 [Multi-domain] Cd Length: 196 Bit Score: 45.68 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 475 LSTMRLLELSNPNHPLLRKILTetpgtyhHSVMVANLSEAACEAVGAN--------GLLarvgayyHDLGK----TKRPQ 542
Cdd:pfam08668 76 ISVKRIFRGTPPLGFDLKGFWE-------HSLACALAARLLARRLGLDdpeeaflaGLL-------HDIGKlillSLLPD 141
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1119636328 543 YFIE-NQMNIDNPHDKLspQLSKNII-ISHTTDGANMLRSYKFPKELVDIAEQHH 595
Cdd:pfam08668 142 KYEElLEKAAEEGISLL--EAERELLgTDHAEVGAALLERWNLPEELVEAIAYHH 194
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
504-595 |
1.70e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 44.70 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 504 HSVMVANLSEAACEAVGANGLLARVGAYYHDLGKTkrpqyfieNQMNIDNphdklspqlskniiiSHTTDGANMLRSYKF 583
Cdd:PRK12705 327 HSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS--------IDRESDG---------------NHVEIGAELARKFNE 383
|
90
....*....|..
gi 1119636328 584 PKELVDIAEQHH 595
Cdd:PRK12705 384 PDEVINAIASHH 395
|
|
| HDOD |
COG1639 |
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms]; |
503-595 |
2.06e-03 |
|
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms];
Pssm-ID: 441246 [Multi-domain] Cd Length: 244 Bit Score: 40.33 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636328 503 HHSVMVANLSEAACEAVGAN--------GLLarvgayyHDLGK----TKRPQYFIEnQMNIDNPHDKLSPQLSKNII-IS 569
Cdd:COG1639 107 RHSLAVAAAARALARRLGLLdpeeaflaGLL-------HDIGKlvllSLFPEEYAE-LLALAEADGLSLAEAEREVLgTD 178
|
90 100
....*....|....*....|....*.
gi 1119636328 570 HTTDGANMLRSYKFPKELVDIAEQHH 595
Cdd:COG1639 179 HAELGAALARKWGLPEELVEAIRYHH 204
|
|
| |
