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Conserved domains on  [gi|1115234216]
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Chain J, Zinc finger CCHC domain-containing protein 8

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSP super family cl02643
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 6-44 9.21e-16

PSP; Proline rich domain found in numerous spliceosome associated proteins.


The actual alignment was detected with superfamily member smart00581:

Pssm-ID: 470641  Cd Length: 54  Bit Score: 62.76  E-value: 9.21e-16
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1115234216   6 RFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL 44
Cdd:smart00581  3 HFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYP 41
 
Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
6-44 9.21e-16

proline-rich domain in spliceosome associated proteins;


Pssm-ID: 128850  Cd Length: 54  Bit Score: 62.76  E-value: 9.21e-16
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1115234216   6 RFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL 44
Cdd:smart00581  3 HFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYP 41
PSP pfam04046
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 8-43 1.22e-15

PSP; Proline rich domain found in numerous spliceosome associated proteins.


Pssm-ID: 461145  Cd Length: 46  Bit Score: 62.07  E-value: 1.22e-15
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1115234216  8 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 43
Cdd:pfam04046  1 KPGKLSDELREALGLPEGQPPPWLYRMQRLGPPPSY 36
CUS1 COG5182
Splicing factor 3b, subunit 2 [RNA processing and modification];
8-43 2.89e-07

Splicing factor 3b, subunit 2 [RNA processing and modification];


Pssm-ID: 227509 [Multi-domain]  Cd Length: 429  Bit Score: 44.21  E-value: 2.89e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1115234216   8 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 43
Cdd:COG5182   279 RPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSY 314
 
Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
6-44 9.21e-16

proline-rich domain in spliceosome associated proteins;


Pssm-ID: 128850  Cd Length: 54  Bit Score: 62.76  E-value: 9.21e-16
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1115234216   6 RFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL 44
Cdd:smart00581  3 HFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYP 41
PSP pfam04046
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 8-43 1.22e-15

PSP; Proline rich domain found in numerous spliceosome associated proteins.


Pssm-ID: 461145  Cd Length: 46  Bit Score: 62.07  E-value: 1.22e-15
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1115234216  8 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 43
Cdd:pfam04046  1 KPGKLSDELREALGLPEGQPPPWLYRMQRLGPPPSY 36
CUS1 COG5182
Splicing factor 3b, subunit 2 [RNA processing and modification];
8-43 2.89e-07

Splicing factor 3b, subunit 2 [RNA processing and modification];


Pssm-ID: 227509 [Multi-domain]  Cd Length: 429  Bit Score: 44.21  E-value: 2.89e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1115234216   8 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 43
Cdd:COG5182   279 RPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSY 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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