hypothetical protein 2 [Beihai picorna-like virus 15]
capsid protein( domain architecture ID 10082141)
picornavirus capsid protein is a component of the capsid (protein coat) which encloses the viral genome; it may play roles in the infection cycle
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
55-228 | 1.26e-15 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich : Pssm-ID: 119412 Cd Length: 178 Bit Score: 75.51 E-value: 1.26e-15
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rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
356-542 | 3.46e-15 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich : Pssm-ID: 119412 Cd Length: 178 Bit Score: 74.35 E-value: 3.46e-15
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Dicistro_VP4 super family | cl13011 | Cricket paralysis virus, VP4; This is a family of minor capsid proteins, known as VP4, from ... |
247-297 | 8.02e-08 | ||||
Cricket paralysis virus, VP4; This is a family of minor capsid proteins, known as VP4, from the dicistroviridae. The dicistroviridae is a group of small, RNA-containing viruses that are closely structurally related to the picornaviridae. VP4 is a short, extended polypeptide chain found within the viral capsid, at the interface between the external protein shell and packaged RNA genome. The actual alignment was detected with superfamily member pfam11492: Pssm-ID: 288362 Cd Length: 53 Bit Score: 49.52 E-value: 8.02e-08
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Name | Accession | Description | Interval | E-value | ||||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
55-228 | 1.26e-15 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 75.51 E-value: 1.26e-15
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rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
356-542 | 3.46e-15 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 74.35 E-value: 3.46e-15
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Dicistro_VP4 | pfam11492 | Cricket paralysis virus, VP4; This is a family of minor capsid proteins, known as VP4, from ... |
247-297 | 8.02e-08 | ||||
Cricket paralysis virus, VP4; This is a family of minor capsid proteins, known as VP4, from the dicistroviridae. The dicistroviridae is a group of small, RNA-containing viruses that are closely structurally related to the picornaviridae. VP4 is a short, extended polypeptide chain found within the viral capsid, at the interface between the external protein shell and packaged RNA genome. Pssm-ID: 288362 Cd Length: 53 Bit Score: 49.52 E-value: 8.02e-08
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Rhv | pfam00073 | picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by ... |
36-172 | 2.38e-03 | ||||
picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognized. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. Pssm-ID: 395026 Cd Length: 170 Bit Score: 39.60 E-value: 2.38e-03
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Name | Accession | Description | Interval | E-value | ||||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
55-228 | 1.26e-15 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 75.51 E-value: 1.26e-15
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rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
356-542 | 3.46e-15 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 74.35 E-value: 3.46e-15
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Dicistro_VP4 | pfam11492 | Cricket paralysis virus, VP4; This is a family of minor capsid proteins, known as VP4, from ... |
247-297 | 8.02e-08 | ||||
Cricket paralysis virus, VP4; This is a family of minor capsid proteins, known as VP4, from the dicistroviridae. The dicistroviridae is a group of small, RNA-containing viruses that are closely structurally related to the picornaviridae. VP4 is a short, extended polypeptide chain found within the viral capsid, at the interface between the external protein shell and packaged RNA genome. Pssm-ID: 288362 Cd Length: 53 Bit Score: 49.52 E-value: 8.02e-08
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Rhv | pfam00073 | picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by ... |
36-172 | 2.38e-03 | ||||
picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognized. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. Pssm-ID: 395026 Cd Length: 170 Bit Score: 39.60 E-value: 2.38e-03
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Blast search parameters | ||||
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