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Conserved domains on  [gi|11095518|gb|AAG29888|]
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cytochrome b, partial (mitochondrion) [Lemur catta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-50 3.80e-30

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 107.42  E-value: 3.80e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-50 3.80e-30

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 107.42  E-value: 3.80e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-50 1.48e-14

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 63.54  E-value: 1.48e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 11095518   1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSF--TLSETWNIGIILLFTV 50
Cdd:cd00284  66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-50 1.04e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 58.16  E-value: 1.04e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 11095518     1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSF--TLSETWNIGIILLFTV 50
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVLT 108
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-48 1.18e-10

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 53.64  E-value: 1.18e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 11095518   1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFT----LseTWNIGIILLF 48
Cdd:COG1290  83 PGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLL 132
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-50 3.80e-30

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 107.42  E-value: 3.80e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123
CYTB MTH00119
cytochrome b; Provisional
 1-50 2.52e-24

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 91.89  E-value: 2.52e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00119  75 QYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124
CYTB MTH00074
cytochrome b; Provisional
 1-50 4.12e-24

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 91.28  E-value: 4.12e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00074  75 NYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLV 124
CYTB MTH00131
cytochrome b; Provisional
 1-50 1.23e-22

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 87.02  E-value: 1.23e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00131  74 NYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLV 123
CYTB MTH00156
cytochrome b; Provisional
 1-50 1.73e-22

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 86.37  E-value: 1.73e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113
CYTB MTH00145
cytochrome b; Provisional
 1-50 1.11e-21

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 84.57  E-value: 1.11e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00145  75 NYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLS 124
CYTB MTH00016
cytochrome b; Validated
 1-48 1.35e-21

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 84.34  E-value: 1.35e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLF 48
Cdd:MTH00016  75 NYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122
CYTB MTH00191
cytochrome b; Provisional
 1-48 3.09e-21

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 83.43  E-value: 3.09e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLF 48
Cdd:MTH00191  71 NYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118
CYTB MTH00224
cytochrome b; Provisional
 1-47 1.10e-19

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 79.19  E-value: 1.10e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILL 47
Cdd:MTH00224  75 NYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILF 121
CYTB MTH00034
cytochrome b; Validated
 1-48 1.55e-19

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 78.59  E-value: 1.55e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLF 48
Cdd:MTH00034  74 NYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121
CYTB MTH00053
cytochrome b; Provisional
 1-48 4.11e-17

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 72.05  E-value: 4.11e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLF 48
Cdd:MTH00053  75 NYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122
CYTB MTH00022
cytochrome b; Validated
 1-47 6.68e-17

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 71.27  E-value: 6.68e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILL 47
Cdd:MTH00022  73 NYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIF 119
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-50 1.48e-14

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 63.54  E-value: 1.48e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 11095518   1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSF--TLSETWNIGIILLFTV 50
Cdd:cd00284  66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117
CYTB MTH00033
cytochrome b; Provisional
 1-48 8.78e-14

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 62.65  E-value: 8.78e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLF 48
Cdd:MTH00033  71 NYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFF 118
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-50 1.04e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 58.16  E-value: 1.04e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 11095518     1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSF--TLSETWNIGIILLFTV 50
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVLT 108
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-48 1.18e-10

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 53.64  E-value: 1.18e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 11095518   1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFT----LseTWNIGIILLF 48
Cdd:COG1290  83 PGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLL 132
CYTB MTH00086
cytochrome b; Provisional
 1-50 2.50e-09

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 49.94  E-value: 2.50e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIILLFTV 50
Cdd:MTH00086  63 NFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112
CYTB MTH00046
cytochrome b; Validated
 2-46 4.97e-09

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 49.21  E-value: 4.97e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 11095518    2 YGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSETWNIGIIL 46
Cdd:MTH00046  66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFIL 110
PRK03735 PRK03735
cytochrome b6; Provisional
 1-50 7.22e-04

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 34.69  E-value: 7.22e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSE--TWNIGIILLFTV 50
Cdd:PRK03735  85 AFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVT 136
petB CHL00070
cytochrome b6
 1-46 2.39e-03

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 33.16  E-value: 2.39e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095518    1 NYGWVIRYLHANGASMFFLCRFIHIGRGLYYGSFTLSE--TWNIGIIL 46
Cdd:CHL00070  77 NFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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