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Conserved domains on  [gi|110734655|gb|ABG88932|]
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elongation factor-1 gamma, partial [Ummidia sp. MY149]

Protein Classification

elongation factor 1-gamma family protein( domain architecture ID 10123605)

elongation factor 1-gamma family protein similar to elongation factor 1-gamma, a subunit of eukaryotic elongation factor 1 complex (eEF1), which plays a role in anchoring eEF1 to other cellular components

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GST_C_EF1Bgamma_like cd03181
Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of ...
3-125 1.94e-72

Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins; Glutathione S-transferase (GST) C-terminal domain family, Gamma subunit of Elongation Factor 1B (EF1Bgamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in protein biosynthesis, EF1Bgamma may also display other functions. The recombinant rice protein has been shown to possess GSH conjugating activity. The yeast EF1Bgamma binds to membranes in a calcium dependent manner and is also part of a complex that binds to the msrA (methionine sulfoxide reductase) promoter suggesting a function in the regulation of its gene expression. Also included in this subfamily is the GST_C-like domain at the N-terminus of human valyl-tRNA synthetase (ValRS) and its homologs. Metazoan ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF.


:

Pssm-ID: 198290 [Multi-domain]  Cd Length: 123  Bit Score: 218.20  E-value: 1.94e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   3 DQSHILQWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLS 82
Cdd:cd03181    1 EAAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRTYLVGERITLADIFVASALLR 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 110734655  83 LYQHVLDPAFRQPFGNVNRWFVTLMHQPQFKAVVGDVALCEKM 125
Cdd:cd03181   81 GFETVLDPEFRKKYPNVTRWFNTVVNQPKFKAVFGEVKLCEKP 123
EF1G pfam00647
Elongation factor 1 gamma, conserved domain;
192-282 1.62e-49

Elongation factor 1 gamma, conserved domain;


:

Pssm-ID: 459888  Cd Length: 105  Bit Score: 159.23  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  192 KDPFEKFPKGTFIMDEFKRVYSNE-AEKVSIEYFWNKFDKENYSIWYCEYLFPQELTLVFMSCNLISGMFQRLDKMRKNA 270
Cdd:pfam00647   1 KHPLDALPKSSFNLDEWKRQYSNEdTRPVALPWFWENFDPEGYSLWKVDYKYNDELTLTFMSSNLIGGFFQRLEASRKYA 80
                          90
                  ....*....|..
gi 110734655  271 FASMCLFGEDNN 282
Cdd:pfam00647  81 FGSVSVYGENNN 92
 
Name Accession Description Interval E-value
GST_C_EF1Bgamma_like cd03181
Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of ...
3-125 1.94e-72

Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins; Glutathione S-transferase (GST) C-terminal domain family, Gamma subunit of Elongation Factor 1B (EF1Bgamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in protein biosynthesis, EF1Bgamma may also display other functions. The recombinant rice protein has been shown to possess GSH conjugating activity. The yeast EF1Bgamma binds to membranes in a calcium dependent manner and is also part of a complex that binds to the msrA (methionine sulfoxide reductase) promoter suggesting a function in the regulation of its gene expression. Also included in this subfamily is the GST_C-like domain at the N-terminus of human valyl-tRNA synthetase (ValRS) and its homologs. Metazoan ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF.


Pssm-ID: 198290 [Multi-domain]  Cd Length: 123  Bit Score: 218.20  E-value: 1.94e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   3 DQSHILQWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLS 82
Cdd:cd03181    1 EAAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRTYLVGERITLADIFVASALLR 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 110734655  83 LYQHVLDPAFRQPFGNVNRWFVTLMHQPQFKAVVGDVALCEKM 125
Cdd:cd03181   81 GFETVLDPEFRKKYPNVTRWFNTVVNQPKFKAVFGEVKLCEKP 123
EF1G pfam00647
Elongation factor 1 gamma, conserved domain;
192-282 1.62e-49

Elongation factor 1 gamma, conserved domain;


Pssm-ID: 459888  Cd Length: 105  Bit Score: 159.23  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  192 KDPFEKFPKGTFIMDEFKRVYSNE-AEKVSIEYFWNKFDKENYSIWYCEYLFPQELTLVFMSCNLISGMFQRLDKMRKNA 270
Cdd:pfam00647   1 KHPLDALPKSSFNLDEWKRQYSNEdTRPVALPWFWENFDPEGYSLWKVDYKYNDELTLTFMSSNLIGGFFQRLEASRKYA 80
                          90
                  ....*....|..
gi 110734655  271 FASMCLFGEDNN 282
Cdd:pfam00647  81 FGSVSVYGENNN 92
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
6-118 1.28e-13

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 68.00  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   6 HILQWISFADSEILPAACTWLFPCLGlmQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQ 85
Cdd:COG0625   92 RVRQWLAWADGDLHPALRNLLERLAP--EKDPAAIARARAELARLLAVLEARLAGGPYLAGDRFSIADIALAPVLRRLDR 169
                         90       100       110
                 ....*....|....*....|....*....|...
gi 110734655  86 HVLDPAfrqPFGNVNRWFVTLMHQPQFKAVVGD 118
Cdd:COG0625  170 LGLDLA---DYPNLAAWLARLAARPAFQRALAA 199
GST_C pfam00043
Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety ...
18-110 6.69e-13

Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes.


Pssm-ID: 459647 [Multi-domain]  Cd Length: 93  Bit Score: 63.07  E-value: 6.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   18 ILPAACTWLFPCLGLMQYNKQSC-EKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQhvLDPAF-RQP 95
Cdd:pfam00043   1 LMDLRMQIALLPYVPPEEKKEPEvDEALEKVARVLSALEEVLKGQTYLVGDKLTLADIALAPALLWLYE--LDPAClREK 78
                          90
                  ....*....|....*
gi 110734655   96 FGNVNRWFVTLMHQP 110
Cdd:pfam00043  79 FPNLKAWFERVAARP 93
PLN02907 PLN02907
glutamate-tRNA ligase
1-149 1.49e-04

glutamate-tRNA ligase


Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 43.17  E-value: 1.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   1 FIDQSHILQWISFAdSEILPAActwlfpclglmqynkqscekakeDIKKALKVLNDHLLARTYLVGERITQADISVFCTL 80
Cdd:PLN02907  73 AFESSQVDEWLDYA-PTFSSGS-----------------------EFENACEYVDGYLASRTFLVGYSLTIADIAIWSGL 128
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110734655  81 LSLYQHVLDPAFRQPFGNVNRWFVTLMHQPQFKA--VVGDVALCEKMAQFDAKKLGELQKKGKDVKEKGSK 149
Cdd:PLN02907 129 AGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILneVTAAYVGKRGAGKPAAAKSKEKVADAGKADGAKDK 199
 
Name Accession Description Interval E-value
GST_C_EF1Bgamma_like cd03181
Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of ...
3-125 1.94e-72

Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins; Glutathione S-transferase (GST) C-terminal domain family, Gamma subunit of Elongation Factor 1B (EF1Bgamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in protein biosynthesis, EF1Bgamma may also display other functions. The recombinant rice protein has been shown to possess GSH conjugating activity. The yeast EF1Bgamma binds to membranes in a calcium dependent manner and is also part of a complex that binds to the msrA (methionine sulfoxide reductase) promoter suggesting a function in the regulation of its gene expression. Also included in this subfamily is the GST_C-like domain at the N-terminus of human valyl-tRNA synthetase (ValRS) and its homologs. Metazoan ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF.


Pssm-ID: 198290 [Multi-domain]  Cd Length: 123  Bit Score: 218.20  E-value: 1.94e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   3 DQSHILQWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLS 82
Cdd:cd03181    1 EAAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRTYLVGERITLADIFVASALLR 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 110734655  83 LYQHVLDPAFRQPFGNVNRWFVTLMHQPQFKAVVGDVALCEKM 125
Cdd:cd03181   81 GFETVLDPEFRKKYPNVTRWFNTVVNQPKFKAVFGEVKLCEKP 123
EF1G pfam00647
Elongation factor 1 gamma, conserved domain;
192-282 1.62e-49

Elongation factor 1 gamma, conserved domain;


Pssm-ID: 459888  Cd Length: 105  Bit Score: 159.23  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  192 KDPFEKFPKGTFIMDEFKRVYSNE-AEKVSIEYFWNKFDKENYSIWYCEYLFPQELTLVFMSCNLISGMFQRLDKMRKNA 270
Cdd:pfam00647   1 KHPLDALPKSSFNLDEWKRQYSNEdTRPVALPWFWENFDPEGYSLWKVDYKYNDELTLTFMSSNLIGGFFQRLEASRKYA 80
                          90
                  ....*....|..
gi 110734655  271 FASMCLFGEDNN 282
Cdd:pfam00647  81 FGSVSVYGENNN 92
GST_C_ValRS_N cd10294
Glutathione S-transferase C-terminal-like, alpha helical domain of vertebrate Valyl-tRNA ...
4-125 7.32e-45

Glutathione S-transferase C-terminal-like, alpha helical domain of vertebrate Valyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, Valyl-tRNA synthetase (ValRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of human ValRS and its homologs from other vertebrates such as frog and zebrafish. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. They typically form large stable complexes with other proteins. ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF. The GST_C-like domain of ValRS from higher eukaryotes is likely involved in protein-protein interactions, to mediate the formation of the multi-aaRS complex that acts as a molecular hub to coordinate protein synthesis. ValRSs from prokaryotes and lower eukaryotes, such as fungi and plants, do not appear to contain this GST_C-like domain.


Pssm-ID: 198327 [Multi-domain]  Cd Length: 123  Bit Score: 148.06  E-value: 7.32e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   4 QSHILQWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSL 83
Cdd:cd10294    2 CALVWQWVSFADNELTPAACAAAFPLLGLSGSDKQNQQRSLAELQRVLKVLDCYLKLRTYLVGEAITLADIAVACALLLP 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 110734655  84 YQHVLDPAFRQPFGNVNRWFVTLMHQPQFKAVVGDVALCEKM 125
Cdd:cd10294   82 FKYVLDPARRESLLNVTRWFLTCVNQPEFLAVLGEVSLCEKA 123
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
6-118 1.28e-13

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 68.00  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   6 HILQWISFADSEILPAACTWLFPCLGlmQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQ 85
Cdd:COG0625   92 RVRQWLAWADGDLHPALRNLLERLAP--EKDPAAIARARAELARLLAVLEARLAGGPYLAGDRFSIADIALAPVLRRLDR 169
                         90       100       110
                 ....*....|....*....|....*....|...
gi 110734655  86 HVLDPAfrqPFGNVNRWFVTLMHQPQFKAVVGD 118
Cdd:COG0625  170 LGLDLA---DYPNLAAWLARLAARPAFQRALAA 199
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
9-103 1.61e-13

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 65.21  E-value: 1.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   9 QWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQHVL 88
Cdd:cd00299    3 ALEDWADATLAPPLVRLLYLEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLAGDQFSLADVALAPVLARLEALGP 82
                         90
                 ....*....|....*
gi 110734655  89 DPAFRQPFGNVNRWF 103
Cdd:cd00299   83 YYDLLDEYPRLKAWY 97
GST_C_AaRS_like cd10289
Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA ...
41-109 2.81e-13

Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA synthetases and similar domains; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of some eukaryotic AaRSs, as well as similar domains found in proteins involved in protein synthesis including Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2 (AIMP2), AIMP3, and eukaryotic translation Elongation Factor 1 beta (eEF1b). AaRSs comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. AaRSs in this subfamily include GluRS from lower eukaryotes, as well as GluProRS, MetRS, and CysRS from higher eukaryotes. AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex found in higher eukaryotes. The GST_C-like domain is involved in protein-protein interactions, mediating the formation of aaRS complexes such as the MetRS-Arc1p-GluRS ternary complex in lower eukaryotes and the multi-aaRS complex in higher eukaryotes, that act as molecular hubs for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198322 [Multi-domain]  Cd Length: 82  Bit Score: 63.87  E-value: 2.81e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110734655  41 EKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQhVLDPAFRQPFGNVNRWFVTLMHQ 109
Cdd:cd10289   15 LLKGKELEALLKSLNSYLASRTFLVGYSLTLADVAVFSALYPSGQ-KLSDKEKKKFPHVTRWFNHIQNL 82
GST_C_AIMP3 cd10305
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
1-113 3.81e-13

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 3; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 3 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP3, also called p18 or eukaryotic translation elongation factor 1 epsilon-1 (EEF1E1), contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It specifically interacts with methionyl-tRNA synthetase (MetRS) and is translocated to the nucleus during DNA synthesis or in response to DNA damage and oncogenic stress. In the nucleus, it interacts with ATM and ATR, which are upstream kinase regulators of p53. It appears to work against DNA damage in cooperation with AIMP2, and similar to AIMP2, AIMP3 is also a haploinsufficient tumor suppressor. AIMP3 transgenic mice have shorter lifespans than wild-type mice and they show characteristics of progeria, suggesting that AIMP3 may also be involved in cellular and organismal aging.


Pssm-ID: 198338 [Multi-domain]  Cd Length: 101  Bit Score: 64.23  E-value: 3.81e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   1 FIDQSHILQWISFADSEILPAActwlfpclglmqynkqscekAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTL 80
Cdd:cd10305    1 AEERAQVDQWLEYRVTQVAPAS--------------------DKADAKSLLKELNSYLQDRTYLVGHKLTLADVVLYYGL 60
                         90       100       110
                 ....*....|....*....|....*....|...
gi 110734655  81 LSLYQHvLDPAFRQPFGNVNRWFVTLMHQPQFK 113
Cdd:cd10305   61 HPIMKD-LSPQEKEQYLNVSRWFDHVQHLPGIR 92
GST_C pfam00043
Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety ...
18-110 6.69e-13

Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes.


Pssm-ID: 459647 [Multi-domain]  Cd Length: 93  Bit Score: 63.07  E-value: 6.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   18 ILPAACTWLFPCLGLMQYNKQSC-EKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQhvLDPAF-RQP 95
Cdd:pfam00043   1 LMDLRMQIALLPYVPPEEKKEPEvDEALEKVARVLSALEEVLKGQTYLVGDKLTLADIALAPALLWLYE--LDPAClREK 78
                          90
                  ....*....|....*
gi 110734655   96 FGNVNRWFVTLMHQP 110
Cdd:pfam00043  79 FPNLKAWFERVAARP 93
GST_C_GluProRS_N cd10309
Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional ...
38-103 2.02e-11

Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional Glutamyl-Prolyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluProRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluProRS may be involved in protein-protein interactions, mediating the formation of the multi-aaRS complex in higher eukaryotes. The multi-aaRS complex acts as a molecular hub for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198342 [Multi-domain]  Cd Length: 81  Bit Score: 58.87  E-value: 2.02e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110734655  38 QSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQHvldPAFRQPFGNVNRWF 103
Cdd:cd10309   13 AGRLSCDQDFSSALSYLDKALSLRTYLVGNSLTLADFAVWAALRGNGEW---LASKEKYVNVTRWF 75
GST_C_8 cd03207
C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases; ...
7-110 9.78e-10

C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 8; composed of Agrobacterium tumefaciens GST and other uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The three-dimensional structure of Agrobacterium tumefaciens GST has been determined but there is no information on its functional characterization.


Pssm-ID: 198316 [Multi-domain]  Cd Length: 101  Bit Score: 54.61  E-value: 9.78e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   7 ILQWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQH 86
Cdd:cd03207    1 YLRWLFFAAGTVEPPLLNKALGRFFEPPWGEPAIAAAYGDLDERLAALEAALAGRPYLVGERFSAADLLLASVLRWARAF 80
                         90       100
                 ....*....|....*....|....
gi 110734655  87 VLDPafrqPFGNVNRWFVTLMHQP 110
Cdd:cd03207   81 GLLP----EYPALRAYVARCTARP 100
GST_C_2 pfam13410
Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.
41-103 5.82e-08

Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.


Pssm-ID: 433185 [Multi-domain]  Cd Length: 67  Bit Score: 48.86  E-value: 5.82e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110734655   41 EKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLyqHVLDPAF--RQPFGNVNRWF 103
Cdd:pfam13410   3 ERAREQLRAALDALEARLADGPGLLGDRPTLADIALAPVLARL--DAAYPGLdlREGYPRLRAWL 65
GST_C_GluRS_N cd10306
Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase; ...
47-106 2.21e-07

Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, Glutamyl-tRNA synthetase (GluRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluRS from lower eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluRS is involved in protein-protein interactions. This domain mediates the formation of the MetRS-Arc1p-GluRS ternary complex found in lower eukaryotes, which is considered an evolutionary intermediate between prokaryotic aaRS and the multi-aaRS complex found in higher eukaryotes. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198339 [Multi-domain]  Cd Length: 87  Bit Score: 47.73  E-value: 2.21e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  47 IKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQhVLDPAFRQPFGNVNRWFVTL 106
Cdd:cd10306   26 LSQALEELDSHLTLRTFIVGYSLSLADIAVWGALRGNGV-AGSLIKNKVYVNLSRWFSFL 84
GST_C_7 cd03206
C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases; ...
7-77 2.47e-07

C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.


Pssm-ID: 198315 [Multi-domain]  Cd Length: 100  Bit Score: 47.99  E-value: 2.47e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110734655   7 ILQWISFADSEIL--PAACTW--LFPclglMQYNKqscEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVF 77
Cdd:cd03206    1 VQRWLSFAAGEIAhgPAAARLihLFG----APLDP---ERARAISHRLLRLLDQHLAGRDWLAGDRPTIADVACY 68
GST_C_Ure2p_like cd03178
C-terminal, alpha helical domain of Ure2p and related Glutathione S-transferase-like proteins; ...
3-113 2.84e-07

C-terminal, alpha helical domain of Ure2p and related Glutathione S-transferase-like proteins; Glutathione S-transferase (GST) C-terminal domain family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p, YfcG and YghU from Escherichia coli, and related GST-like proteins. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. YfcG and YghU are two of the nine GST homologs in the genome of Escherichia coli. They display very low or no GSH transferase, but show very good disulfide bond oxidoreductase activity. YghU also shows modest organic hydroperoxide reductase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST active site is located in a cleft between the N- and C-terminal domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.


Pssm-ID: 198288 [Multi-domain]  Cd Length: 110  Bit Score: 48.01  E-value: 2.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   3 DQSHILQWISFADSEILPAACTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLS 82
Cdd:cd03178    1 ERAEVLQWLFFQMSGLGPMFGQAGHFLYFAPEKIPYAIERYTDEVKRLYGVLDKRLSDRPYLAGEEYSIADIALYPWTHY 80
                         90       100       110
                 ....*....|....*....|....*....|.
gi 110734655  83 LYQHvlDPAFRQPFGNVNRWFVTLMHQPQFK 113
Cdd:cd03178   81 ADLG--GFADLSEYPNVKRWLERIAARPAVQ 109
GST_C_eEF1b_like cd10308
Glutathione S-transferase C-terminal-like, alpha helical domain of eukaryotic translation ...
46-105 8.81e-07

Glutathione S-transferase C-terminal-like, alpha helical domain of eukaryotic translation Elongation Factor 1 beta; Glutathione S-transferase (GST) C-terminal domain family, eukaryotic translation Elongation Factor 1 beta (eEF1b) subfamily; eEF1b is a component of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. eEF1b contains a GST_C-like alpha helical domain at the N-terminal region and a C-terminal guanine nucleotide exchange domain. The GST_C-like domain likely functions as a protein-protein interaction domain, similar to the function of the GST_C-like domains of EF1Bgamma and various aminoacyl-tRNA synthetases (aaRSs) from higher eukaryotes.


Pssm-ID: 198341  Cd Length: 82  Bit Score: 45.88  E-value: 8.81e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  46 DIKKALKVLNDHLLARTYLVGERITQADISVFCTLlslyqHVLDPAFRQPfgNVNRWFVT 105
Cdd:cd10308   26 KTDKGLEALNEYLADRSYISGYSPSQADVEVFDKL-----KKAPDATKFP--HLARWYRH 78
GST_C_Delta_Epsilon cd03177
C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; ...
41-103 1.58e-06

C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.


Pssm-ID: 198287 [Multi-domain]  Cd Length: 117  Bit Score: 45.99  E-value: 1.58e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110734655  41 EKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSLYQHVLDPAfrqPFGNVNRWF 103
Cdd:cd03177   37 EEKLDKLEEALEFLETFLEGSDYVAGDQLTIADLSLVATVSTLEVVGFDLS---KYPNVAAWY 96
GST_C_Theta cd03183
C-terminal, alpha helical domain of Class Theta Glutathione S-transferases; Glutathione ...
23-103 2.97e-06

C-terminal, alpha helical domain of Class Theta Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DCM as sole carbon and energy sources. The presence of polymorphisms in human GSTT1-1 and its relationship to the onset of diseases including cancer is the subject of many studies. Human GSTT2-2 exhibits a highly specific sulfatase activity, catalyzing the cleavage of sulfate ions from aralkyl sufate esters, but not from the aryl or alkyl sulfate esters.


Pssm-ID: 198292 [Multi-domain]  Cd Length: 126  Bit Score: 45.67  E-value: 2.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  23 CTWLFPCLGLMQYNKQSCEKAKEDIKKALKVLNDHLLA-RTYLVGERITQADISVFCTLLSLYQHVLDPafRQPFGNVNR 101
Cdd:cd03183   26 QKVLLPLFGGTPVSPEKVKKAEENLEESLDLLENKFLKdKPFLAGDEISIADLSAICEIMQPEAAGYDV--FEGRPKLAA 103

                 ..
gi 110734655 102 WF 103
Cdd:cd03183  104 WR 105
GST_C_Beta cd03188
C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Glutathione ...
6-80 3.94e-06

C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they are involved in the protection against oxidative stress and are able to bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs, contributing to antibiotic resistance. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH. One member of this subfamily is a GST from Burkholderia xenovorans LB400 that is encoded by the bphK gene and is part of the biphenyl catabolic pathway.


Pssm-ID: 198297 [Multi-domain]  Cd Length: 113  Bit Score: 44.93  E-value: 3.94e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110734655   6 HILQWISFADSEILPAACTWLFPCL-GLMQYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTL 80
Cdd:cd03188    5 RLLEWLNFIASELHKAFGPLFYPARwADDALAEEVKAAARERLERRLAYLDAQLAGGPYLLGDQFSVADAYLFVVL 80
GST_C_2 cd03180
C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases; ...
9-112 1.94e-05

C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.


Pssm-ID: 198289 [Multi-domain]  Cd Length: 110  Bit Score: 42.65  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   9 QWISFADSEILPAactWLFPCLGLM-----QYNKQSCEKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCtllSL 83
Cdd:cd03180    8 RWMDWQTSTLNPA---FRYAFWGLVrtppeQRDPAAIAASLAACNKLMAILDAQLARQAYLAGDRFTLADIALGC---SV 81
                         90       100
                 ....*....|....*....|....*....
gi 110734655  84 YQHVLDPAFRQPFGNVNRWFVTLMHQPQF 112
Cdd:cd03180   82 YRWLELPIERPALPHLERWYARLSQRPAF 110
GST_C_YfcG_like cd10291
C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and ...
43-114 3.34e-05

C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and related uncharacterized proteins; Glutathione S-transferase (GST) C-terminal domain family, YfcG-like subfamily; composed of the Escherichia coli YfcG and related proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST active site is located in a cleft between the N- and C-terminal domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. YfcG is one of nine GST homologs in Escherichia coli. It is expressed predominantly during the late stationary phase where the predominant form of GSH is glutathionylspermidine (GspSH), suggesting that YfcG might interact with GspSH. It has very low or no GSH transferase or peroxidase activity, but displays a unique disulfide bond reductase activity that is comparable to thioredoxins (TRXs) and glutaredoxins (GRXs). However, unlike TRXs and GRXs, YfcG does not contain a redox active cysteine residue and may use a bound thiol disulfide couple such as 2GSH/GSSG for activity. The crystal structure of YcfG reveals a bound GSSG molecule in its active site. The actual physiological substrates for YfcG are yet to be identified.


Pssm-ID: 198324 [Multi-domain]  Cd Length: 110  Bit Score: 42.25  E-value: 3.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  43 AKEDIKKALK-----------VLNDHLLARTYLVGERITQADISVFCTLLSLYQHVLDPAfrqPFGNVNRWFVTLMHQPQ 111
Cdd:cd10291   30 APEKIPYAIKrytnetkrlygVLDRRLAKSKYLAGDEYSIADIAIWPWVARHEWQGIDLA---DFPNLKRWFERLAARPA 106

                 ...
gi 110734655 112 FKA 114
Cdd:cd10291  107 VQK 109
GST_C_Arc1p_N_like cd10304
Glutathione S-transferase C-terminal-like, alpha helical domain of the Aminoacyl tRNA ...
4-83 8.20e-05

Glutathione S-transferase C-terminal-like, alpha helical domain of the Aminoacyl tRNA synthetase cofactor 1 and similar proteins; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase cofactor 1 (Arc1p)-like subfamily; Arc1p, also called GU4 nucleic binding protein 1 (G4p1) or p42, is a tRNA-aminoacylation and nuclear-export cofactor. It contains a domain in the N-terminal region with similarity to the C-terminal alpha helical domain of GSTs. This domain mediates the association of the aminoacyl tRNA synthetases (aaRSs), MetRS and GluRS, in yeast to form a stable stoichiometric ternany complex. The GST_C-like domain of Arc1p is a protein-protein interaction domain containing two binding sites which enable it to bind the two aaRSs simultaneously and independently. The MetRS-Arc1p-GluRS complex selectively recruits and aminoacylates its cognate tRNAs without additional cofactors. Arc1p also plays a role in the transport of tRNA from the nucleus to the cytoplasm. It may also control the subcellular distribution of GluRS in the cytoplasm, nucleoplasm, and the mitochondrial matrix.


Pssm-ID: 198337 [Multi-domain]  Cd Length: 100  Bit Score: 40.82  E-value: 8.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   4 QSHILQWISFADSeilpaactwlfpclglmqynkqscEKAKEDIKKALKVLNDHLLARTYLVG-ERITQADISVFCTLLS 82
Cdd:cd10304    4 SAEVAQWLSVAKS------------------------GPVSKDVQETLGQLNLHLRTRTFLLGtGKPSVADVAVFEAVLP 59

                 .
gi 110734655  83 L 83
Cdd:cd10304   60 V 60
PLN02907 PLN02907
glutamate-tRNA ligase
1-149 1.49e-04

glutamate-tRNA ligase


Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 43.17  E-value: 1.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655   1 FIDQSHILQWISFAdSEILPAActwlfpclglmqynkqscekakeDIKKALKVLNDHLLARTYLVGERITQADISVFCTL 80
Cdd:PLN02907  73 AFESSQVDEWLDYA-PTFSSGS-----------------------EFENACEYVDGYLASRTFLVGYSLTIADIAIWSGL 128
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110734655  81 LSLYQHVLDPAFRQPFGNVNRWFVTLMHQPQFKA--VVGDVALCEKMAQFDAKKLGELQKKGKDVKEKGSK 149
Cdd:PLN02907 129 AGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILneVTAAYVGKRGAGKPAAAKSKEKVADAGKADGAKDK 199
GST_C_Omega_like cd03190
C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases; Glutathione ...
41-96 5.88e-04

C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae Omega-like subfamily; composed of three Saccharomyces cerevisiae GST omega-like (Gto) proteins, Gto1p, Gto2p (also known as Extracellular mutant protein 4 or ECM4p), and Gto3p, as well as similar uncharacterized proteins from fungi and bacteria. The three Saccharomyces cerevisiae Gto proteins are omega-class GSTs with low or no GST activity against standard substrates, but have glutaredoxin/thiol oxidoreductase and dehydroascorbate reductase activity through a single cysteine residue in the active site. Gto1p is located in the peroxisomes while Gto2p and Gto3p are cytosolic. The gene encoding Gto2p, called ECM4, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.


Pssm-ID: 198299 [Multi-domain]  Cd Length: 142  Bit Score: 39.09  E-value: 5.88e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 110734655  41 EKAKEDIKKALKVLNDHLLARTYLVGERITQADISVFCTLLSlyqhvLDPAFRQPF 96
Cdd:cd03190   36 DKAVKELFEALDKLEKRLSKQPYLLGDRLTEADIRLFTTLIR-----FDPVYHQHF 86
GST_C_6 cd03205
C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases; ...
47-114 3.03e-03

C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.


Pssm-ID: 198314 [Multi-domain]  Cd Length: 109  Bit Score: 36.41  E-value: 3.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110734655  47 IKKALKVLNDHLLARTylvGERITQADISVFCTL--LSLYQHVLDPAFRQPfgNVNRWFVTLMHQPQFKA 114
Cdd:cd03205   42 IERALDALEAELGDLP---GGRLTLGDIAVACALgyLDFRFPELDWRAGHP--ALAAWFARFEARPSFQA 106
GST_C_GTT1_like cd03189
C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases; Glutathione ...
46-74 3.37e-03

C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.


Pssm-ID: 198298 [Multi-domain]  Cd Length: 123  Bit Score: 36.90  E-value: 3.37e-03
                         10        20
                 ....*....|....*....|....*....
gi 110734655  46 DIKKALKVLNDHLLARTYLVGERITQADI 74
Cdd:cd03189   62 ELKRHLDFLEDHLAKHPYFAGDELTAADI 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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