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Conserved domains on  [gi|110627401|gb|ABG79240|]
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cytochrome b, partial (mitochondrion) [Zapus hudsonius campestris]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 654.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00100  26 NISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00100 106 SYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFIL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00100 186 PFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTP 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00100 266 PHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEH 345

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00100 346 PFIIIGQLASILYFL 360
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 654.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00100  26 NISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00100 106 SYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFIL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00100 186 PFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTP 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00100 266 PHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEH 345

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00100 346 PFIIIGQLASILYFL 360
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-334 4.30e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 351.40  E-value: 4.30e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:COG1290   35 NWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYG 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIE--TWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFH- 157
Cdd:COG1290  115 AYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHv 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 158 FILPFIIAAMAIIHLLFLHESGSNNPLGI----TSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDllGDPDNYTP 233
Cdd:COG1290  195 LLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGP 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 234 ANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLT 311
Cdd:COG1290  273 ANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLT 352

                        330       340
                 ....*....|....*....|...
gi 110627401 312 WIGAQPVEYpfVIIGQVASILYF 334
Cdd:COG1290  353 ILGANPPIA--TLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-181 8.17e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.32  E-value: 8.17e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:cd00284   18 NISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SY--TFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHF 158
Cdd:cd00284   98 SYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHF 177

                        170       180
                 ....*....|....*....|...
gi 110627401 159 ILPFIIAAMAIIHLLFLHESGSN 181
Cdd:cd00284  178 LLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-179 5.05e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 254.61  E-value: 5.05e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401    1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:pfam00033   9 NLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   81 --SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHF 158
Cdd:pfam00033  89 gfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHF 168

                         170       180
                  ....*....|....*....|.
gi 110627401  159 ILPFIIAAMAIIHLLFLHESG 179
Cdd:pfam00033 169 LLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 233-315 1.80e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 1.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  233 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIF-RPISQCLYwaLVADLITLt 311
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ....
gi 110627401  312 WIGA 315
Cdd:TIGR01156 142 WLGI 145
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 654.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00100  26 NISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00100 106 SYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFIL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00100 186 PFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTP 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00100 266 PHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEH 345

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00100 346 PFIIIGQLASILYFL 360
CYTB MTH00119
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 608.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00119  27 NISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYG 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00119 107 SYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00119 187 PFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00119 267 PHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEH 346

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00119 347 PFIIIGQLASILYFT 361
CYTB MTH00131
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 594.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00131  26 NISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00131 106 SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLF 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00131 186 PFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTP 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00131 266 PHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEH 345

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00131 346 PFIIIGQVASVLYFS 360
CYTB MTH00156
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 571.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00156  16 NISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYG 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00156  96 SYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00156 176 PFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTP 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00156 256 VHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEE 335

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00156 336 PYILTGQILTILYFL 350
CYTB MTH00074
cytochrome b; Provisional
 1-334 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 568.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00074  27 NLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYG 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00074 107 SYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00074 187 PFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00074 267 PHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVED 346

                        330
                 ....*....|....
gi 110627401 321 PFVIIGQVASILYF 334
Cdd:MTH00074 347 PFIEIGQAASILYF 360
CYTB MTH00191
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 568.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00191  23 NISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00191 103 SYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLL 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00191 183 PFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTP 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00191 263 VHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVED 342

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00191 343 PFILLGQISSFLYFF 357
CYTB MTH00145
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 545.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00145  27 NLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYG 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00145 107 SYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00145 187 PFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00145 267 VHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEE 346

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00145 347 PYETIGQVFTVLYFL 361
CYTB MTH00034
cytochrome b; Validated
 1-335 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 529.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00034  26 NLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00034 106 SYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLF 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00034 186 PFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTP 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00034 266 PHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEY 345

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00034 346 PFILLGQVASVLYFS 360
CYTB MTH00016
cytochrome b; Validated
 1-335 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 511.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00016  27 NLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYG 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00016 107 SYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00016 187 PFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00016 267 THIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEP 346

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00016 347 PYEFLGQIFTVFYFF 361
CYTB MTH00022
cytochrome b; Validated
 1-335 6.23e-164

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 462.25  E-value: 6.23e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00022  25 NISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYG 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00022 105 GYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00022 185 PFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTP 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00022 265 VHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEE 344

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00022 345 PFILIGQLLSFFYFF 359
CYTB MTH00053
cytochrome b; Provisional
 1-335 9.65e-162

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 456.48  E-value: 9.65e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00053  27 NISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYG 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00053 107 SYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00053 187 PFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00053 267 VHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEE 346

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00053 347 PYILIGQIASIFYFA 361
CYTB MTH00224
cytochrome b; Provisional
 1-335 2.32e-160

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 453.22  E-value: 2.32e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00224  27 NISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYG 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00224 107 SFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00224 187 PFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00224 267 IHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVED 346

                        330
                 ....*....|....*
gi 110627401 321 PFVIIGQVASILYFS 335
Cdd:MTH00224 347 PFEGIGQVFTILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 1-334 1.83e-126

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 367.34  E-value: 1.83e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00033  23 NISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00033 103 GYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLL 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLF--SPDLLGDPDNYTPANPLN 238
Cdd:MTH00033 183 PFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDPENFIQANPLV 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 239 TPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTWIGAQPV 318
Cdd:MTH00033 263 TPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPA 342

                        330
                 ....*....|....*..
gi 110627401 319 -EYPFVIIGQVASILYF 334
Cdd:MTH00033 343 gADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-334 4.30e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 351.40  E-value: 4.30e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:COG1290   35 NWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYG 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIE--TWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFH- 157
Cdd:COG1290  115 AYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHv 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 158 FILPFIIAAMAIIHLLFLHESGSNNPLGI----TSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDllGDPDNYTP 233
Cdd:COG1290  195 LLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGP 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 234 ANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLT 311
Cdd:COG1290  273 ANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLT 352

                        330       340
                 ....*....|....*....|...
gi 110627401 312 WIGAQPVEYpfVIIGQVASILYF 334
Cdd:COG1290  353 ILGANPPIA--TLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 1-334 2.48e-113

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 332.67  E-value: 2.48e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:MTH00086  15 SLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMM 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFIL 160
Cdd:MTH00086  95 SYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 161 PFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDvLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00086 175 PWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSP 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANqrsMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00086 254 VHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYT---SCLNKLNKFLVFSFIVVNVILSWLGQCLVEY 330

                        330
                 ....*....|....
gi 110627401 321 PFVIIGQVASILYF 334
Cdd:MTH00086 331 PFLFLSQIFSFIYF 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-181 8.17e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.32  E-value: 8.17e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:cd00284   18 NISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  81 SY--TFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHF 158
Cdd:cd00284   98 SYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHF 177

                        170       180
                 ....*....|....*....|...
gi 110627401 159 ILPFIIAAMAIIHLLFLHESGSN 181
Cdd:cd00284  178 LLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-332 4.93e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 265.69  E-value: 4.93e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   2 ISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYGS 81
Cdd:MTH00046  18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  82 YTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHFILP 161
Cdd:MTH00046  98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 162 FIIAAMAIIHLLFLHESGSNNPLGITSD-ADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTP 240
Cdd:MTH00046 178 FVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTP 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 241 PHIKPEWYFLFAYAILRSIPNKLGGViALILSILILAIVPflhnANQRSMIFRPISQCLYWALVADLITLTWIGAQPVEY 320
Cdd:MTH00046 258 VSIKPEWYFLAFYAMLRSINSKIGGL-VLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEY 332

                        330
                 ....*....|..
gi 110627401 321 PFVIIGQVASIL 332
Cdd:MTH00046 333 PYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-179 5.05e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 254.61  E-value: 5.05e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401    1 NISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYG 80
Cdd:pfam00033   9 NLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   81 --SYTFIETWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFHF 158
Cdd:pfam00033  89 gfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHF 168

                         170       180
                  ....*....|....*....|.
gi 110627401  159 ILPFIIAAMAIIHLLFLHESG 179
Cdd:pfam00033 169 LLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 182-329 1.14e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 157.42  E-value: 1.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 182 NPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 261
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110627401 262 KLGGVIALILSILILAIVPFLHNANQRSMiFRPISQCLYWALVADLITLTWIGAQPVEYPFVIIGQVA 329
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
PRK03735 PRK03735
cytochrome b6; Provisional
 8-184 6.28e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 145.24  E-value: 6.28e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   8 FGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYGSYTFIE- 86
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  87 -TWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 164
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 110627401 165 AAMAIIHLLFLHESGSNNPL 184
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
63-228 5.25e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 138.53  E-value: 5.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   63 SLFFICLFLHVGRGLYYGSYTFIE--TWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIW 140
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  141 GGFSVDKATLTRFFAFHF-ILPFIIAAMAIIHLLFLHESGSNNPLGITSDADKIPFHPYYTIKDVLGLLFMLLLLLSLVL 219
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 110627401  220 FSPDLLGDP 228
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
233-333 7.08e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 132.99  E-value: 7.08e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  233 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIFRPISQCLYWALVADLITLTW 312
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 110627401  313 IGAQPVEYPFVIIGQVASILY 333
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 2-184 2.34e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.91  E-value: 2.34e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401   2 ISTWWNFGSLLGACLAIQIITGLFLAMHYTSDISTAFSSVTHICRDVNYGWFIRYLHANGASLFFICLFLHVGRGLYYGS 81
Cdd:CHL00070  30 VNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  82 YTFIE--TWNVGILLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFH-F 158
Cdd:CHL00070 110 FKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtF 189

                        170       180
                 ....*....|....*....|....*.
gi 110627401 159 ILPFIIAAMAIIHLLFLHESGSNNPL 184
Cdd:CHL00070 190 VLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 233-315 6.19e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.89  E-value: 6.19e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401 233 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIF-RPISQCLYwaLVADLITLt 311
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF--LFGTLVTL- 142


                 ....
gi 110627401 312 WIGA 315
Cdd:COG5679  143 WLGI 146
petD CHL00058
cytochrome b6/f complex subunit IV
 233-296 4.97e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.40  E-value: 4.97e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110627401 233 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQ-RSMIFRPIS 296
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKfQNPFRRPVA 129
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 233-315 1.80e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 1.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110627401  233 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAIVPFLHNANQRSMIF-RPISQCLYwaLVADLITLt 311
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ....
gi 110627401  312 WIGA 315
Cdd:TIGR01156 142 WLGI 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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