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Conserved domains on  [gi|1106076550|emb|SGR37958|]
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putative lipoprotein [Staphylococcus aureus]

Protein Classification

DUF4909 domain-containing protein( domain architecture ID 11242021)

DUF4909 domain-containing protein similar to Staphylococcus aureus protein SAV1798

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4909 pfam16253
Domain of unknown function (DUF4909); This family of proteins is found in bacteria. Proteins ...
 34-160 2.18e-95

Domain of unknown function (DUF4909); This family of proteins is found in bacteria. Proteins in this family are approximately 160 amino acids in length. Several members are associated with vancomycin virulence in Staph. aureus in some way. These proteins are all lipoproteins, carrying the characteriztic prokaryotic membrane-attachment site at their N-termini.


:

Pssm-ID: 292870  Cd Length: 127  Bit Score: 271.56  E-value: 2.18e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1106076550  34 QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE 113
Cdd:pfam16253   1 QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1106076550 114 NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN 160
Cdd:pfam16253  81 NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN 127
 
Name Accession Description Interval E-value
DUF4909 pfam16253
Domain of unknown function (DUF4909); This family of proteins is found in bacteria. Proteins ...
 34-160 2.18e-95

Domain of unknown function (DUF4909); This family of proteins is found in bacteria. Proteins in this family are approximately 160 amino acids in length. Several members are associated with vancomycin virulence in Staph. aureus in some way. These proteins are all lipoproteins, carrying the characteriztic prokaryotic membrane-attachment site at their N-termini.


Pssm-ID: 292870  Cd Length: 127  Bit Score: 271.56  E-value: 2.18e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1106076550  34 QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE 113
Cdd:pfam16253   1 QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1106076550 114 NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN 160
Cdd:pfam16253  81 NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN 127
 
Name Accession Description Interval E-value
DUF4909 pfam16253
Domain of unknown function (DUF4909); This family of proteins is found in bacteria. Proteins ...
 34-160 2.18e-95

Domain of unknown function (DUF4909); This family of proteins is found in bacteria. Proteins in this family are approximately 160 amino acids in length. Several members are associated with vancomycin virulence in Staph. aureus in some way. These proteins are all lipoproteins, carrying the characteriztic prokaryotic membrane-attachment site at their N-termini.


Pssm-ID: 292870  Cd Length: 127  Bit Score: 271.56  E-value: 2.18e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1106076550  34 QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE 113
Cdd:pfam16253   1 QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1106076550 114 NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN 160
Cdd:pfam16253  81 NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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