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Conserved domains on  [gi|110559387|gb|ABG75949|]
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NADH dehydrogenase subunit 6, partial (mitochondrion) [Synodontis robbianus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-142 5.36e-50

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 157.22  E-value: 5.36e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110559387  81 TWGVGSVKAYVLMYLFGVGVAVWWFWGS--HGGWVVVDEFKEFFVVRGNISGISLMYSVGGGML 142
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGwyEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGML 144
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-142 5.36e-50

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 157.22  E-value: 5.36e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110559387  81 TWGVGSVKAYVLMYLFGVGVAVWWFWGS--HGGWVVVDEFKEFFVVRGNISGISLMYSVGGGML 142
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGwyEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGML 144
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
39-116 3.61e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 35.56  E-value: 3.61e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110559387   39 ACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAAL-AAEPFPETWGVGSVKAYVLMYLFGVGVAVWWFWGSHGGWVVVD 116
Cdd:pfam00499  23 VAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLALLLLVLLSASLTPAAAA 101
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-142 5.36e-50

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 157.22  E-value: 5.36e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110559387  81 TWGVGSVKAYVLMYLFGVGVAVWWFWGS--HGGWVVVDEFKEFFVVRGNISGISLMYSVGGGML 142
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGwyEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGML 144
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-142 2.46e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 99.54  E-value: 2.46e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110559387  81 TWGVGSVKAYVLMYLFGVGVaVWWFWGSHGG--WVVVDEFKEFFVVRGNISGISLMYSVGGGML 142
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIV-GYILFGCNFSleFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFL 143
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-142 1.63e-24

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 92.50  E-value: 1.63e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110559387  81 TWGVGSVKAYV---LMYLFGVGVAVWWFWGSHGGWVVVDEFKEFFVVRGNISGISLMYSVGGGML 142
Cdd:MTH00115  81 AWGDWGVVGYVvgfVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGL 145
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-139 1.18e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 72.14  E-value: 1.18e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110559387  81 TWGVGSVK------------AYVLMYLFGVGVAVWWFWGSHGGWVVVDEfKEFFVVRGNISGISLMYSVGG 139
Cdd:MTH00109  82 TWVSNKVVlgalllgllmelLLVLYVLKDDEVEVVFNFNGLGDWVIYDT-GGSGFFSEDAMGVAALYSYGT 151
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-142 9.96e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 66.94  E-value: 9.96e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110559387   1 MMYFLDILLLGLVVGLVGVASNPAPYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110559387  81 TWGVGSVKAYVLMYLFGVGVAVWWFWGSHG--GWVVVDEFKEFFVvrgniSGISLMYSVGGGML 142
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEmlSWMGVDEANNLDL-----SGVSDLYSRGFFLL 139
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 25-87 9.13e-07

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 45.67  E-value: 9.13e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110559387  25 PYFAALGLAMAAGVACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPETWGVGSV 87
Cdd:MTH00045  23 PYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEV 85
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
39-116 3.61e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 35.56  E-value: 3.61e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110559387   39 ACGVLIAHGGSLVGLMLFLIYLGGMLVVFAYSAAL-AAEPFPETWGVGSVKAYVLMYLFGVGVAVWWFWGSHGGWVVVD 116
Cdd:pfam00499  23 VAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLALLLLVLLSASLTPAAAA 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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