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Conserved domains on  [gi|110433077|gb|ABG74281|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Lepilemur ankaranensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.49e-64

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 190.92  E-value: 1.49e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 110433077  81 TTNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.49e-64

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 190.92  E-value: 1.49e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 110433077  81 TTNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.32e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.95  E-value: 3.32e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   18 VMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNLKLTLTTALAL-IS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIA 78

                          90
                  ....*....|....*.
gi 110433077   97 ILTAGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-113 2.22e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.01  E-value: 2.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  12 LMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNLKLTLTTA 91
Cdd:COG0838   17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIE 94

                         90       100
                 ....*....|....*....|...
gi 110433077  92 LAL-ISILTAGLAYEWFQKGLEW 113
Cdd:COG0838   95 MLVfIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.49e-64

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 190.92  E-value: 1.49e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 110433077  81 TTNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.34e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 148.14  E-value: 1.34e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTI-TINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00136   1 MNLITTIlTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 110433077  80 QTTNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.91e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 140.13  E-value: 1.91e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   3 LPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTT 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 110433077  83 NLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 1.49e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 132.70  E-value: 1.49e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 110433077  81 TTNLKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 7.15e-35

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 115.85  E-value: 7.15e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 110433077  81 TTNLKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-113 1.61e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 109.99  E-value: 1.61e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   5 LTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQttNL 84
Cdd:MTH00203   6 LFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQ--LS 83

                         90       100
                 ....*....|....*....|....*....
gi 110433077  85 KLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00203  84 SLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.32e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.95  E-value: 3.32e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   18 VMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNLKLTLTTALAL-IS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIA 78

                          90
                  ....*....|....*.
gi 110433077   97 ILTAGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 5-115 7.59e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 93.00  E-value: 7.59e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   5 LTITINTLMVAILVMIAFWLPQLNVY-TEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTN 83
Cdd:MTH00148   6 LSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 110433077  84 LKLTLTTALALISILTAGLAYEWFQKGLEWEE 115
Cdd:MTH00148  86 SVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-113 9.73e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 90.22  E-value: 9.73e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   5 LTITINTLMVAILVMIAFWL--PQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTT 82
Cdd:MTH00161   3 LIILLIILLISIILMILASLlsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 110433077  83 NLKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00161  83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 5-113 1.96e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 84.27  E-value: 1.96e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   5 LTITINTLMVAILVMIAFwlpQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNL 84
Cdd:MTH00202  10 LSILISSLLFLVSWMLSF---RSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWS 86

                         90       100
                 ....*....|....*....|....*....
gi 110433077  85 KLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00202  87 KGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-113 2.22e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.01  E-value: 2.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  12 LMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNLKLTLTTA 91
Cdd:COG0838   17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIE 94

                         90       100
                 ....*....|....*....|...
gi 110433077  92 LAL-ISILTAGLAYEWFQKGLEW 113
Cdd:COG0838   95 MLVfIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-113 3.31e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 78.75  E-value: 3.31e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWL--PQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVlaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 110433077  79 IQTTNLKLTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-114 2.46e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 76.67  E-value: 2.46e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  31 TEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNLKLTLTTALALIsILTAGLAYEWFQKG 110
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGG 114


                 ....
gi 110433077 111 LEWE 114
Cdd:MTH00055 115 LEWE 118
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 7.37e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 72.97  E-value: 7.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   7 ITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNL-K 85
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIgW 92

                         90       100
                 ....*....|....*....|....*....
gi 110433077  86 LTLTTALALISILTAGLAYEWFQKGLEWE 114
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-114 2.37e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 71.25  E-value: 2.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 110433077  81 TTNLKLT-LTTALALISILTAGLAYEWFQKGLEWE 114
Cdd:MTH00018  79 YNQIAPFgFWTMVGFLFILTLGLIYEWIKGGLEWE 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-114 6.60e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 65.34  E-value: 6.60e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  31 TEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNLKLTLTTALALIsILTAGLAYEWFQKG 110
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLI-VLAIGLAYEWIKGG 119


                 ....
gi 110433077 111 LEWE 114
Cdd:MTH00030 120 LEWD 123
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-113 6.21e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 49.99  E-value: 6.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  12 LMVAILVMI-AFWLPQL----NVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNL-K 85
Cdd:CHL00022  14 LIISSLIPIlAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLgV 91

                         90       100
                 ....*....|....*....|....*...
gi 110433077  86 LTLTTALALISILTAGLAYEWFQKGLEW 113
Cdd:CHL00022  92 SAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 1.98e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 45.82  E-value: 1.98e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  33 KYNPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAIQT-TNLKLTLTTALALISILTAGLAYEWFQK 109
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFdALGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....*
gi 110433077 110 GLEWE 114
Cdd:PRK07928 115 GLEWD 119
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 5.68e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.50  E-value: 5.68e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110433077   1 MNLPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 1.81e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 43.58  E-value: 1.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAIQTTNL-KLTLTTALALISILTAGLAYEWFQKG 110
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLgLFALIEMLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 110433077 111 LEW 113
Cdd:PRK07756 119 LQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-114 1.94e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 40.81  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433077   3 LPLTITINTLMVAILVMIAFWLPQLNVYTEKYNPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTT 82
Cdd:PRK08489  17 LVLTFVAFFLTTRLARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFK 93

                         90       100       110
                 ....*....|....*....|....*....|...
gi 110433077  83 NL-KLTLTTALALISILTAGLAYEWFQKGLEWE 114
Cdd:PRK08489  94 LLgLFGLIEMLLFIVLLTIGFIYAWKKGALEWQ 126
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 4.45e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.80  E-value: 4.45e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 110433077  34 YNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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