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Conserved domains on  [gi|1103528794|gb|APD14953|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Trigonidium sjostedti]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-311 1.51e-143

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 406.46  E-value: 1.51e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1103528794 246 VMVFMGGDFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-311 1.51e-143

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 406.46  E-value: 1.51e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1103528794 246 VMVFMGGDFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
14-303 3.08e-102

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 301.70  E-value: 3.08e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  14 LILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLSLSIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  94 LMFPFVSNLIT--MNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNMIN 171
Cdd:pfam00146  83 AVIPFGPGLVLadLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 172 FYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVFMG 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1103528794 252 G------DFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMF 303
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-313 3.58e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 284.72  E-value: 3.58e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   1 MYLSDLFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFI 80
Cdd:COG1005     3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  81 CPILSLFLSLSIWLMFPFVSNLI--TMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILL 158
Cdd:COG1005    83 APILAFIPALLAFAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 159 SLVILIESFNMINFYMYQEK-IWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGS 237
Cdd:COG1005   163 GVVLLAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 238 ILFMSMLSVMVFMGG-------DFFTMI-----FYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLnFMMFFI 305
Cdd:COG1005   243 MFLVSALATTLFLGGwlgpfpiLPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLT 321


                  ....*...
gi 1103528794 306 GIFMFLWD 313
Cdd:COG1005   322 AAVVLLFG 329
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
14-311 6.89e-53

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 176.43  E-value: 6.89e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  14 LILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPIlslFLSLSIW 93
Cdd:NF040610   17 LALIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPI---VAMGSVF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  94 LM---FPFVSNLIT----------MNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSL 160
Cdd:NF040610   94 LMlvaIPFGAVIINgveyplvvtnMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 161 VILIESFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILF 240
Cdd:NF040610  174 AIMAGSLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLIL 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 241 MSMLSVMVFMGG-------------DFF--TMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFI 305
Cdd:NF040610  254 GSFLVVLLFLGGwnlpgfvtdipvlGIIlpTLFFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAI 333


                  ....*.
gi 1103528794 306 GIFMFL 311
Cdd:NF040610  334 ALGLYL 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-311 1.51e-143

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 406.46  E-value: 1.51e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1103528794 246 VMVFMGGDFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 10-309 4.98e-132

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 377.45  E-value: 4.98e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  10 FISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLS 89
Cdd:MTH00225    4 LLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  90 LSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNM 169
Cdd:MTH00225   84 LILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 170 INFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVF 249
Cdd:MTH00225  164 FDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1103528794 250 MGGDFFTM--IFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFM 309
Cdd:MTH00225  244 FGGFFVTIdlFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-308 7.84e-130

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 371.90  E-value: 7.84e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   7 FLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSL 86
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  87 FLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIES 166
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 167 FNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSV 246
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1103528794 247 MVFMGGDFFTMI-----FYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIF 308
Cdd:MTH00143  241 VLFFGGSSVLFLlggvvFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-305 9.96e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 341.88  E-value: 9.96e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1103528794 246 VMVFM-------GGDFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFI 305
Cdd:MTH00111  244 TILFLnpstlnlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHT 310
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 6-305 1.15e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 338.90  E-value: 1.15e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00071  164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1103528794 246 VMVFMGGDFF-------TMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFI 305
Cdd:MTH00071  244 TILFLGSTYNhlqpelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHI 310
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-311 2.75e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 335.34  E-value: 2.75e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1103528794 246 VMVFMGGDFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00218  241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSF 306
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-311 6.83e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 334.28  E-value: 6.83e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  10 FISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLS 89
Cdd:MTH00104    3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  90 LSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNM 169
Cdd:MTH00104   83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 170 INFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVF 249
Cdd:MTH00104  163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1103528794 250 MGG-------DFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00104  243 LGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMT 311
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 3-307 4.07e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 332.73  E-value: 4.07e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   3 LSDLFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICP 82
Cdd:MTH00134    2 LSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  83 ILSLFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVI 162
Cdd:MTH00134   82 MLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVII 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 163 LIESFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMS 242
Cdd:MTH00134  162 FTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1103528794 243 MLSVMVFMGGDFF-------TMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGI 307
Cdd:MTH00134  242 TLSAILFLGASHIptlpeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLAL 313
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 6-307 1.02e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 323.62  E-value: 1.02e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   6 LFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILS 85
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  86 LFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIE 165
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 166 SFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1103528794 246 VMVFMGGDfFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGI 307
Cdd:MTH00195  241 TILFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAI 301
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 5-311 1.09e-108

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 318.84  E-value: 1.09e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   5 DLFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPIL 84
Cdd:MTH00040    2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  85 SLFLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILI 164
Cdd:MTH00040   82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 165 ESFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSML 244
Cdd:MTH00040  162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1103528794 245 SVMVFMGGD-FFTMIF-------YFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00040  242 SVILFLGGGsPFNEIFpiniiivGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLL 316
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 10-312 2.38e-104

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 307.48  E-value: 2.38e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  10 FISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLS 89
Cdd:MTH00010    6 FISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  90 LSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNM 169
Cdd:MTH00010   86 LLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 170 INFYMYQEKiWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVF 249
Cdd:MTH00010  166 SKIIMSQYS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFF 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1103528794 250 MG----GDFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFLW 312
Cdd:MTH00010  245 TSfipsIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
NADHdh pfam00146
NADH dehydrogenase;
14-303 3.08e-102

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 301.70  E-value: 3.08e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  14 LILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLSLSIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  94 LMFPFVSNLIT--MNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNMIN 171
Cdd:pfam00146  83 AVIPFGPGLVLadLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 172 FYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVFMG 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1103528794 252 G------DFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMF 303
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 10-309 7.80e-96

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 286.24  E-value: 7.80e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  10 FISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLS 89
Cdd:MTH00054    5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  90 LSIWLMFPFVSNLITMNL--GILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESF 167
Cdd:MTH00054   85 FIAWGVIPYGEGVVLSDLgiGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 168 NMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVM 247
Cdd:MTH00054  165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1103528794 248 VFMGGDFFTMI----------FYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFM 309
Cdd:MTH00054  245 LFLGGWLVISGptsyfsnfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILI 316
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-313 3.58e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 284.72  E-value: 3.58e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   1 MYLSDLFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFI 80
Cdd:COG1005     3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  81 CPILSLFLSLSIWLMFPFVSNLI--TMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILL 158
Cdd:COG1005    83 APILAFIPALLAFAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 159 SLVILIESFNMINFYMYQEK-IWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGS 237
Cdd:COG1005   163 GVVLLAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 238 ILFMSMLSVMVFMGG-------DFFTMI-----FYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLnFMMFFI 305
Cdd:COG1005   243 MFLVSALATTLFLGGwlgpfpiLPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLT 321


                  ....*...
gi 1103528794 306 GIFMFLWD 313
Cdd:COG1005   322 AAVVLLFG 329
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 3-312 2.02e-90

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 272.38  E-value: 2.02e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   3 LSDLFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICP 82
Cdd:MTH00216    2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  83 ILSLFLSLSIWLMFPFVSNLIT--MNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSL 160
Cdd:MTH00216   82 VLSFTLALIVWGVIPYERGVLIsdFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 161 VILIESFNMINFYMYQEK-IWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSIL 239
Cdd:MTH00216  162 LLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHII 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 240 FMSMLSVMVFMGG------DFF--TMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFMFL 311
Cdd:MTH00216  242 LMSCLTTILFLGGwlspikYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGF 321


                  .
gi 1103528794 312 W 312
Cdd:MTH00216  322 N 322
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
14-298 1.06e-87

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 265.52  E-value: 1.06e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  14 LILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLSLSIW 93
Cdd:PRK06076   17 VVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAW 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  94 LMFPFVSNLIT--MNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNMIN 171
Cdd:PRK06076   97 AVIPFGPELVIadLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSD 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 172 FYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVFMG 251
Cdd:PRK06076  177 IVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLG 256

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1103528794 252 G-----DFFTMI-----FYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSL 298
Cdd:PRK06076  257 GwlppfPLGGGIpgaiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 11-309 1.01e-72

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 227.98  E-value: 1.01e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  11 ISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLSL 90
Cdd:MTH00029   11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  91 SIWLMFPFVSN--LITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFN 168
Cdd:MTH00029   91 LAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 169 MINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMV 248
Cdd:MTH00029  171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 249 FMGG-----------------------DFFTMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFI 305
Cdd:MTH00029  251 FLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330


                  ....
gi 1103528794 306 GIFM 309
Cdd:MTH00029  331 GILI 334
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 14-309 3.71e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 198.58  E-value: 3.71e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  14 LILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSLFLSLSIW 93
Cdd:MTH00090    3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  94 LMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIESFNMINFy 173
Cdd:MTH00090   83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSS- 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 174 myqekiwFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLSVMVFMGgd 253
Cdd:MTH00090  162 -------FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK-- 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1103528794 254 fFTMIFYFklvIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFIGIFM 309
Cdd:MTH00090  233 -FSFLMLF---LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 7-305 9.02e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 177.42  E-value: 9.02e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   7 FLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPILSL 86
Cdd:MTH00058    1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  87 FLSLSIWLMFPFVSNLITMNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSLVILIES 166
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 167 FNMINFYMyqeKIWFMFLALPL-FFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILFMSMLS 245
Cdd:MTH00058  161 YSLVDFYY---SGWLSVLLFPLiYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLG 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 246 VMVFMGGDFFTMIFYFKLviisFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFI 305
Cdd:MTH00058  238 SVLFFGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
14-311 6.89e-53

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 176.43  E-value: 6.89e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  14 LILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICPIlslFLSLSIW 93
Cdd:NF040610   17 LALIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPI---VAMGSVF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  94 LM---FPFVSNLIT----------MNLGILYFFCLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILLSL 160
Cdd:NF040610   94 LMlvaIPFGAVIINgveyplvvtnMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 161 VILIESFNMINFYMYQEKIWFMFLALPLFFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYGSILF 240
Cdd:NF040610  174 AIMAGSLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLIL 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 241 MSMLSVMVFMGG-------------DFF--TMIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYLPVSLNFMMFFI 305
Cdd:NF040610  254 GSFLVVLLFLGGwnlpgfvtdipvlGIIlpTLFFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAI 333


                  ....*.
gi 1103528794 306 GIFMFL 311
Cdd:NF040610  334 ALGLYL 339
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-298 1.65e-42

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 150.10  E-value: 1.65e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   3 LSDLFLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPNKLGYMGILQPFSDAIKLFCKEMTYPIMSNYLLYFICP 82
Cdd:CHL00032   23 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  83 ---ILSLFLSlsiWLMFPFVSNLITMNLGILYFF--CLSSISVYSIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMIL 157
Cdd:CHL00032  103 siaVISILLS---YLVIPFGYHLVLADLSIGVFLwiAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCV 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 158 LSLVILIESFNMINFYMYQEKIWFMFLAL---PL-FFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMA 233
Cdd:CHL00032  180 LSISLLSNSLSTVDIVEAQSKYGFWGWNLwrqPIgFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 234 EYGSILFMSMLSVMVFMGG-----------DFF----------TMIFYFKLVIISFLFVWV----RGTFPRFRYDKLMYL 288
Cdd:CHL00032  260 SYLNLLVSSLFVTVLYLGGwnlsipyifipELFeinktggvfgTTIGIFITLAKTYLFLFIsittRWTLPRLRMDQLLNL 339

                         330
                  ....*....|
gi 1103528794 289 TWKVYLPVSL 298
Cdd:CHL00032  340 GWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-294 2.21e-27

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 108.35  E-value: 2.21e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794   7 FLGFISYLILMICVLVSVAFLTLLERKILGYIQIRKGPnklgymGILQPFSDAIKLFCKEMTYPIMSNYL------LYFI 80
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLfraapyVALA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794  81 CPILSLFL--SLSIWLMFPFVSNLItmnlGILYFFCLSSISvysIMLAGWSSNSNYALLGSLRSVAQTISYEVSLAMILL 158
Cdd:COG0650    75 AMLLAALLvpVLTTGPPLSFSGDLI----VLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLF 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1103528794 159 SLVILIESFNM--INFYMYQEKIWFMFLALPL-FFCWFSSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEY 235
Cdd:COG0650   148 ALALLAGSTSLsdIVAYQAAHGPLLLSPSLLLaAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAA 227

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1103528794 236 GSILFMSMLSVMVFMGGDFFT------MIFYFKLVIISFLFVWVRGTFPRFRYDKLMYLTWKVYL 294
Cdd:COG0650   228 LKLFVLLSLFVNLFLPWGIALtlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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