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Conserved domains on  [gi|110282893|gb|ABG61079|]
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50S ribosomal protein L35 [Cytophaga hutchinsonii ATCC 33406]

Protein Classification

50S ribosomal protein L35( domain architecture ID 10000967)

50S ribosomal protein L35 is involved in signal peptide recognition

Gene Symbol:  rpmI
Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803
SCOP:  4003406

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-62 2.65e-22

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440060  Cd Length: 64  Bit Score: 80.48  E-value: 2.65e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110282893  1 MPKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLL 62
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-62 2.65e-22

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 80.48  E-value: 2.65e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110282893  1 MPKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLL 62
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-62 5.23e-18

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 69.32  E-value: 5.23e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110282893   2 PKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-62 3.16e-14

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 59.98  E-value: 3.16e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110282893   2 PKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:TIGR00001  1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLL 61
rpl35 CHL00103
ribosomal protein L35
 1-62 1.41e-09

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 48.16  E-value: 1.41e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110282893  1 MPKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:CHL00103  1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLML 62
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-62 2.65e-22

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 80.48  E-value: 2.65e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110282893  1 MPKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLL 62
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-62 5.23e-18

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 69.32  E-value: 5.23e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110282893   2 PKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-62 3.16e-14

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 59.98  E-value: 3.16e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110282893   2 PKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:TIGR00001  1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLL 61
rpl35 CHL00103
ribosomal protein L35
 1-62 1.41e-09

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 48.16  E-value: 1.41e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110282893  1 MPKVKTKSGAKKRFKLTGSGKIKRKSAYHSHILTKKSTKRKRNLVHAHLVSAADESNVRAML 62
Cdd:CHL00103  1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLML 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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