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ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid) [Seemannia purpurascens]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
RuBisCO_large super family | cl08232 | Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) ... |
1-53 | 6.37e-34 | ||
Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The actual alignment was detected with superfamily member CHL00040: Pssm-ID: 471793 Cd Length: 475 Bit Score: 119.04 E-value: 6.37e-34
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Name | Accession | Description | Interval | E-value | ||
rbcL | CHL00040 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit |
1-53 | 6.37e-34 | ||
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit Pssm-ID: 176981 Cd Length: 475 Bit Score: 119.04 E-value: 6.37e-34
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RuBisCO_large_I | cd08212 | Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase ... |
23-53 | 2.50e-16 | ||
Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. Pssm-ID: 173977 Cd Length: 450 Bit Score: 70.15 E-value: 2.50e-16
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RuBisCO_large_N | pfam02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of ... |
23-53 | 1.58e-09 | ||
Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. Pssm-ID: 426983 Cd Length: 120 Bit Score: 48.75 E-value: 1.58e-09
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Name | Accession | Description | Interval | E-value | ||
rbcL | CHL00040 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit |
1-53 | 6.37e-34 | ||
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit Pssm-ID: 176981 Cd Length: 475 Bit Score: 119.04 E-value: 6.37e-34
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rbcL | PRK04208 | ribulose bisophosphate carboxylase; Reviewed |
8-53 | 8.01e-19 | ||
ribulose bisophosphate carboxylase; Reviewed Pssm-ID: 179787 Cd Length: 468 Bit Score: 77.25 E-value: 8.01e-19
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RuBisCO_large_I | cd08212 | Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase ... |
23-53 | 2.50e-16 | ||
Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. Pssm-ID: 173977 Cd Length: 450 Bit Score: 70.15 E-value: 2.50e-16
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RuBisCO_large_N | pfam02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of ... |
23-53 | 1.58e-09 | ||
Ribulose bisphosphate carboxylase large chain, N-terminal domain; The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. Pssm-ID: 426983 Cd Length: 120 Bit Score: 48.75 E-value: 1.58e-09
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RuBisCO_large_I_II_III | cd08206 | Ribulose bisphosphate carboxylase large chain, Form I,II,III; Ribulose bisphosphate ... |
34-53 | 1.29e-06 | ||
Ribulose bisphosphate carboxylase large chain, Form I,II,III; Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues. Pssm-ID: 173971 Cd Length: 414 Bit Score: 42.61 E-value: 1.29e-06
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