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Conserved domains on  [gi|1101975578|ref|WP_071525538|]
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MULTISPECIES: DUF1799 domain-containing protein [Yersinia pseudotuberculosis complex]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1799 super family cl07424
Phage related hypothetical protein (DUF1799); Members of this family are about 100 amino acids ...
 9-81 1.59e-19

Phage related hypothetical protein (DUF1799); Members of this family are about 100 amino acids in length and are uncharacterized.


The actual alignment was detected with superfamily member pfam08809:

Pssm-ID: 400938  Cd Length: 75  Bit Score: 74.68  E-value: 1.59e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1101975578  9 DDFDDVIIEIWPDVWPAFRVIRAMSTQWRTGMSGPTGLDYGCLSQVMDWSGV--ESKATVFEDVRHMESVALSVI 81
Cdd:pfam08809  1 EDYQADPVEVWPENWMAYQLFLRVGTQWRVGPAGPVGLDYGALYHVLDRMGLdaEQYDDLFDQIQVLESAALEEI 75
 
Name Accession Description Interval E-value
DUF1799 pfam08809
Phage related hypothetical protein (DUF1799); Members of this family are about 100 amino acids ...
 9-81 1.59e-19

Phage related hypothetical protein (DUF1799); Members of this family are about 100 amino acids in length and are uncharacterized.


Pssm-ID: 400938  Cd Length: 75  Bit Score: 74.68  E-value: 1.59e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1101975578  9 DDFDDVIIEIWPDVWPAFRVIRAMSTQWRTGMSGPTGLDYGCLSQVMDWSGV--ESKATVFEDVRHMESVALSVI 81
Cdd:pfam08809  1 EDYQADPVEVWPENWMAYQLFLRVGTQWRVGPAGPVGLDYGALYHVLDRMGLdaEQYDDLFDQIQVLESAALEEI 75
 
Name Accession Description Interval E-value
DUF1799 pfam08809
Phage related hypothetical protein (DUF1799); Members of this family are about 100 amino acids ...
 9-81 1.59e-19

Phage related hypothetical protein (DUF1799); Members of this family are about 100 amino acids in length and are uncharacterized.


Pssm-ID: 400938  Cd Length: 75  Bit Score: 74.68  E-value: 1.59e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1101975578  9 DDFDDVIIEIWPDVWPAFRVIRAMSTQWRTGMSGPTGLDYGCLSQVMDWSGV--ESKATVFEDVRHMESVALSVI 81
Cdd:pfam08809  1 EDYQADPVEVWPENWMAYQLFLRVGTQWRVGPAGPVGLDYGALYHVLDRMGLdaEQYDDLFDQIQVLESAALEEI 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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