|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
5.55e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 277.86 E-value: 5.55e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 1 MFNNSSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 81 NNKINIvineIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISVILSVII 160
Cdd:MTH00160 81 NLMLFN----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 241 FLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNWMMVSQTNNFNMNLy 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL- 315
|
330 340
....*....|....*....|
gi 110189314 321 LILSFMSIFGLFLISMFYFM 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-273 |
3.05e-30 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 116.64 E-value: 3.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 24 SNSWLAAWMGLEINLLSFIPLVSDN-NNFKSTEASLKYFLTQALASTVLLFSvIILMLNNKINIVINEI----------- 91
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFG-ISLMYNYTGTLSFDELskaltgglnss 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 92 ---FISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMN-ALLLMTWQKLAPLMLI--------SYLNLNNLLLISVILSVI 159
Cdd:pfam00361 80 gllLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISML 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 160 IGAIGGLNQTSLRKLMAFSSINHLGWMLSAL----KISESIWMIYFMFYSLLSFILCFMFNIF-----KCFHLNQLFSWF 230
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLA 239
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 110189314 231 LQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYF 273
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-266 |
3.45e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 85.17 E-value: 3.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 9 LFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVS-DNNNFKSTEASLKYFLTQALASTVLLF-------------- 73
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnl 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 74 SVIILMLNNKINIVINEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLA----------PLMLISY 143
Cdd:COG1007 186 AGIAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 144 LNLNNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSAL----KISESIWMIYFMFYSLLS-----FILCFM 214
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNlgafaVILLLS 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 110189314 215 FNIFKCFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQL 266
Cdd:COG1007 346 RKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-334 |
9.63e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 83.84 E-value: 9.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 2 FNNSSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVS-DNNNFKSTEASLKYFLTQALASTVLLF------- 73
Cdd:TIGR01770 99 INKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliyg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 74 -------SVIILMLNNKINIVINEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLI----- 141
Cdd:TIGR01770 179 ftgslnfEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlfl 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 142 -----SYLNLNNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLL--------- 207
Cdd:TIGR01770 259 yilfgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalmslgaf 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 208 -SFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITL 286
Cdd:TIGR01770 339 gVLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 110189314 287 FFYLRICFSAFMlnyfeNNWMMVSQTNNFNMNLYLILSFMSIFGLFLI 334
Cdd:TIGR01770 419 FYYLRVVKVMYF-----DKPERRIPSNPQSKAQSLLLSISALFILFLG 461
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
5.55e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 277.86 E-value: 5.55e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 1 MFNNSSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILML 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 81 NNKINIvineIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISVILSVII 160
Cdd:MTH00160 81 NLMLFN----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTL 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 241 FLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNWMMVSQTNNFNMNLy 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL- 315
|
330 340
....*....|....*....|
gi 110189314 321 LILSFMSIFGLFLISMFYFM 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-341 |
1.32e-67 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 215.84 E-value: 1.32e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 6 SKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILMLNNKI- 84
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQw 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 85 NIVINEIFISSIMLST-LLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAP---LMLISYLNLNNLLLISVILSVII 160
Cdd:MTH00112 85 DITQLTNPTSCTLLTLaLAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltlLLMTSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTL 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 241 FLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFM-LNYFENNWMMVSQTNNFNMNL 319
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTItLPPNTTNMMMKWRTKPKKNTL 324
|
330 340
....*....|....*....|..
gi 110189314 320 YLILSFMSIFGLFLISMFYFMF 341
Cdd:MTH00112 325 TATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-337 |
2.73e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 196.99 E-value: 2.73e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 8 ILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVII-LMLNNKINI 86
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIInLMYSGQWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 87 V-INEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLML---ISYLNLNNLLLISVILSVIIGA 162
Cdd:MTH00105 87 TkLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIlyqISPSINPNLLLTLAILSILIGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 163 IGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFL 242
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 243 NFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAF--MLNYFENNWMMVSQTNNFNMNLY 320
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSltMFPSTNNMKMKWQFENTKPMTLL 326
|
330
....*....|....*..
gi 110189314 321 LILSFMSIFGLFLISMF 337
Cdd:MTH00105 327 PTLIILSTMLLPLTPML 343
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-336 |
1.73e-59 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 194.75 E-value: 1.73e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 10 FLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVII-LMLNNKINIVI 88
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInAWFTGEWTIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 89 NEIFISSIMLST-LLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLML---ISYLNLNNLLLISVILSVIIGAIG 164
Cdd:MTH00070 89 MQTPLPTIMLTIaLMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLLSTLIGGWG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 165 GLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNF 244
Cdd:MTH00070 169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 245 LSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNyfENNWMMVSQTNNFNMNLYLILS 324
Cdd:MTH00070 249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTT--SPNTSNSKLYWRFKNKTNNLLS 326
|
330
....*....|..
gi 110189314 325 FMSIFGLFLISM 336
Cdd:MTH00070 327 LTIILSLMLLPI 338
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-341 |
2.90e-57 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 188.99 E-value: 2.90e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 3 NNSSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVII-LMLN 81
Cdd:MTH00041 2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqAWLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 82 NKINIVIN-EIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISV---ILS 157
Cdd:MTH00041 82 GSWSINGPlNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILIlcgILS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 158 VIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILK 237
Cdd:MTH00041 162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 238 FTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNWMMVSQTNNFNM 317
Cdd:MTH00041 242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNI 321
|
330 340
....*....|....*....|....*...
gi 110189314 318 NLYL----ILSFMSIFGLFLISMFYFMF 341
Cdd:MTH00041 322 TVYGvilsILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
9-295 |
3.11e-56 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 186.16 E-value: 3.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 9 LFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLF-SVIILMLNNKINIV 87
Cdd:MTH00135 8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFaSTTNAWLTGQWDIQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 88 -INEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISV--ILSVIIGAIG 164
Cdd:MTH00135 88 qMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITlgLTSTLVGGWG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 165 GLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNF 244
Cdd:MTH00135 168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLIL 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 110189314 245 LSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFS 295
Cdd:MTH00135 248 LSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
9-341 |
1.38e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 168.99 E-value: 1.38e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 9 LFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILMLNNKINIVI 88
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGIS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 89 --NEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLML---ISYLNLNNLLLISVILSVIIGAI 163
Cdd:MTH00200 88 emLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliqLAPALNSNILLLLGLLSVLVGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 164 GGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLN 243
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 244 FLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNWMMVSQTNNFNMNLYLIL 323
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGL 327
|
330
....*....|....*....
gi 110189314 324 SFM-SIFGLFLISMFYFMF 341
Cdd:MTH00200 328 LLLlSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-339 |
7.27e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 163.90 E-value: 7.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 5 SSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILMLNNki 84
Cdd:MTH00144 4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLS-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 85 niviNEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISV----ILSVII 160
Cdd:MTH00144 82 ----FSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcvisVLSALV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 161 GAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTL 240
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 241 FLnFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNwmmvsqtNNFNMNLY 320
Cdd:MTH00144 238 SL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK-------SNSSKVLN 309
|
330
....*....|....*....
gi 110189314 321 LILSFMSIFGLFLISMFYF 339
Cdd:MTH00144 310 SSIISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
9-299 |
1.10e-46 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 161.10 E-value: 1.10e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 9 LFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILMLNNKINIvi 88
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 89 neIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISVIL---SVIIGAIGG 165
Cdd:MTH00011 88 --NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMaamSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 166 LNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNFL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 110189314 246 SLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFML 299
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-334 |
4.77e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 151.36 E-value: 4.77e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 9 LFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILMLNNKINIVI 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 89 NEIFISSimlstLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLN-LNNLLLISVILSVIIGAIGGLN 167
Cdd:MTH00197 82 VVLVILG-----LLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSsSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 168 QTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNFLSL 247
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 248 GGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNWMMVSQTNNFNMNLYLILSFMS 327
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316
|
....*..
gi 110189314 328 IFGLFLI 334
Cdd:MTH00197 317 LMIFTMI 323
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-273 |
3.05e-30 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 116.64 E-value: 3.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 24 SNSWLAAWMGLEINLLSFIPLVSDN-NNFKSTEASLKYFLTQALASTVLLFSvIILMLNNKINIVINEI----------- 91
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFG-ISLMYNYTGTLSFDELskaltgglnss 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 92 ---FISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMN-ALLLMTWQKLAPLMLI--------SYLNLNNLLLISVILSVI 159
Cdd:pfam00361 80 gllLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISML 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 160 IGAIGGLNQTSLRKLMAFSSINHLGWMLSAL----KISESIWMIYFMFYSLLSFILCFMFNIF-----KCFHLNQLFSWF 230
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLA 239
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 110189314 231 LQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYF 273
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-341 |
1.86e-29 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 115.90 E-value: 1.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 13 MMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDN-NNFKSTEASLKYFLTQALASTVLLF--------------SVII 77
Cdd:MTH00196 1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNrGSGYSAEAGLKYFVLGALSSGLFLFgcallcgttgglhlSYIN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 78 LMLNNKINIVINEIFISSIMLS-TLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPL-MLISYLNLNNLLLISVI 155
Cdd:MTH00196 81 LVLNSGQSFSSVSVPIGYLLIIvALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFsILVSIGLNVNILLIGGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 156 LSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKIS--ESI-----WMIYFMFYSLLSFILCFMFNIFKCFhLNQLFS 228
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfESIqaslvYLFIYIIMSICVFSIILALNVYKNL-IIEFSG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 229 WFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRIcfsaFMLNYFENNWMM 308
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI----VKILFFQANSFL 315
|
330 340 350
....*....|....*....|....*....|...
gi 110189314 309 VSQTNNFNMNLYLILSFMSIFGLFLISMFYFMF 341
Cdd:MTH00196 316 LISTKILKKENKINLRKALLIGFSLYLILFTIL 348
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
5-263 |
1.50e-26 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 109.34 E-value: 1.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 5 SSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLS-FIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILM-LNN 82
Cdd:MTH00199 97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYgLTG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 83 KINIV-INEIFISSI----MLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPL-MLISYLNLNNLLLISVIL 156
Cdd:MTH00199 177 ETSIQgINSILTGDVgkilITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFsILVQIGPVTNVVLICAVL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 157 SVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKIS--ESI-----WMIYFMFYSLLSFILCFMFNIFKCFhLNQLFSW 229
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGsfESIqasliYMIIYVIMSICSFSIILSLKLTKGL-IVEVSGL 335
|
250 260 270
....*....|....*....|....*....|....
gi 110189314 230 FLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVI 263
Cdd:MTH00199 336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
11-266 |
7.20e-19 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 87.18 E-value: 7.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 11 LMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVS-DNNNFKSTEASLKYFLTQALASTVLL--------------FSV 75
Cdd:PRK05777 109 VLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAG 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 76 IILMLNNKINIVINEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLA---PLMLISYLNLN----- 147
Cdd:PRK05777 189 IAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAFGglsed 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 148 --NLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSL------LSFILCFMFNIFK 219
Cdd:PRK05777 269 wqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLaylfmtLGAFGVISLLRRK 348
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 110189314 220 CFHLNQLFSW---FLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQL 266
Cdd:PRK05777 349 GGEAESISDFaglSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAA 398
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-266 |
3.45e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 85.17 E-value: 3.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 9 LFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVS-DNNNFKSTEASLKYFLTQALASTVLLF-------------- 73
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnl 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 74 SVIILMLNNKINIVINEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLA----------PLMLISY 143
Cdd:COG1007 186 AGIAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 144 LNLNNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSAL----KISESIWMIYFMFYSLLS-----FILCFM 214
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNlgafaVILLLS 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 110189314 215 FNIFKCFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQL 266
Cdd:COG1007 346 RKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-334 |
9.63e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 83.84 E-value: 9.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 2 FNNSSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVS-DNNNFKSTEASLKYFLTQALASTVLLF------- 73
Cdd:TIGR01770 99 INKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliyg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 74 -------SVIILMLNNKINIVINEIFISSIMLSTLLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLI----- 141
Cdd:TIGR01770 179 ftgslnfEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlfl 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 142 -----SYLNLNNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSLL--------- 207
Cdd:TIGR01770 259 yilfgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalmslgaf 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 208 -SFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITL 286
Cdd:TIGR01770 339 gVLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 110189314 287 FFYLRICFSAFMlnyfeNNWMMVSQTNNFNMNLYLILSFMSIFGLFLI 334
Cdd:TIGR01770 419 FYYLRVVKVMYF-----DKPERRIPSNPQSKAQSLLLSISALFILFLG 461
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
6-292 |
1.19e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 71.81 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 6 SKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKST---------EASLKYFLTQALASTVLLFSVI 76
Cdd:MTH00198 189 SGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 77 ILMlnnkiNIVINEIFISSIMLSTL---------------------LLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKL 135
Cdd:MTH00198 269 LYF-----GFTGNEGMLGTILSATLettnielrqgslgylfitvaiLFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 136 APLMLISYLNLNNLLLISV-ILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKI-------SESIWMIYFMFYSLL 207
Cdd:MTH00198 344 TVYILLTSLVITSKLLLSVaIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAgtyeslqASWTYAVTYLVSALA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 208 SF-ILCFM--FNIFKCFHLNQLFSWFLQNKI---------------LKFTLFLNFLSLGGLPPFLGFLPKWIVIQ---QL 266
Cdd:MTH00198 424 SFtVICTLeeFGTRTPTSRQRDGSFGNYNLVrrlvdltilsrgqpyIAFSLAIVFLSLAGIPPLLGFLGKWFILVgsiKI 503
|
330 340 350
....*....|....*....|....*....|
gi 110189314 267 TFCSS----YFLLMILLMTTLITLFFYLRI 292
Cdd:MTH00198 504 AFSSSlsiyYLVALFAIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-264 |
4.47e-10 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 60.55 E-value: 4.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 10 FLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIILMLN----NKIN 85
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAtgtlNMAD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 86 IVINEIFISSIMLSTLLL--------KSGAAPFHFWFPNLM-EGLTWMNALL--LMTwqKLAPLMLI----------SYL 144
Cdd:COG0651 192 LAARLAELDPGLLLAAFAlllvgfgiKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILrvltllfgadPAL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 145 NLNNLLLISVILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFY--------SLLSFILCFMFN 216
Cdd:COG0651 270 FLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhalakALLFLAAGAIER 349
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 110189314 217 IFKCFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQ 264
Cdd:COG0651 350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
11-262 |
1.70e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 55.87 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 11 LMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVS-DNNNFKSTEASLKYFLTQALASTVLLFSVIIL--------MLN 81
Cdd:PRK08376 127 ILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLygqygtlnMAY 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 82 NKINIVINEIFISSIMLS----TLLLKSGAAPFHFWFPNLM-EGLTWMNALLLMTWQ-KLAPLMLISYLNLNNLLLISVI 155
Cdd:PRK08376 207 LAVKMSENPTVVAKIALAlfiaGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIKQaGLYALARVLFSIYGPAINLATV 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 156 ---------LSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIW--------------------MIYFMFYSL 206
Cdd:PRK08376 287 gwviiilgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialaggiyhiVNHALYKAL 366
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 110189314 207 LSFILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIV 262
Cdd:PRK08376 367 LFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
52-259 |
3.61e-08 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 54.67 E-value: 3.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 52 KSTEASLKYFLTQALASTVLLFSVIIL---------MLNNKINIVINEIFISSI----MLSTLLLKSGAAPFHFWFPNLM 118
Cdd:PRK02504 158 RSNEAALKYLLIGAASSAIFLYGSSLLyglsggstqLSAIALALITSPSLGLALalvfVIAGIAFKISAVPFHQWTPDVY 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 119 EGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLIS----------VILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLS 188
Cdd:PRK02504 238 EGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSFDeqwkllftalAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMI 317
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110189314 189 ALKI-------SESIWMIYFMFYSLLSFILCFMFNIFK-CFHLNQLFSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPK 259
Cdd:PRK02504 318 GLVAgteagyaSMVFYLLAYLFMNLGAFACVILFSLRTgTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
52-259 |
3.87e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 51.54 E-value: 3.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 52 KSTEASLKYFLTQALASTVLLFSVIIL------------MLNNKINIVINEIFISSIMLSTLL----LKSGAAPFHFWFP 115
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSWLyglsggeielqeIVNGLINTQMYNSPGISIALIFITvgigFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 116 NLMEGL-TWMNALLLMTwQKLAPLMLISYLNLNNLLLIS----------VILSVIIGAIGGLNQTSLRKLMAFSSINHLG 184
Cdd:CHL00049 239 DVYEGSpTPVVAFLSVT-SKVAASALATRIFDIPFYFSSnewhllleilAILSMILGNLIAITQTSMKRMLAYSSIGQIG 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 185 WMLSALKISES--------IWMIYFMFYSLLSFILCFMF-------NIFKCFHLnqlfswFLQNKILKFTLFLNFLSLGG 249
Cdd:CHL00049 318 YVIIGIIVGDSndgyasmiTYMLFYIFMNLGTFACIVLFglrtgtdNIRDYAGL------YTKDPFLALSLALCLLSLGG 391
|
250
....*....|
gi 110189314 250 LPPFLGFLPK 259
Cdd:CHL00049 392 IPPLAGFFGK 401
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-263 |
1.23e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 49.88 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 34 LEINLLSFIPLVSDNNNFKSTEASLKYFLTQALASTVLLFSVIIL-MLNNKINI-VINEIFISS--------IMLSTLLL 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLyGVTGTLNMaDLAGALAENptvvtafgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 104 KSGAAPFHFWFPNLMEGLT-WMNALLLMTWQKLAPLMLI------------SYLNLNNLLLISVILSVIIGAIGGLNQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALIriyftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 171 LRKLMAFSSINHLGWMLSALKISESIWM---IYFMFYSLLSFILCFM-----FNIFKCFHLNQLFSWFLQNKILKFTLFL 242
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALaagLLHLLHHALMKGALFLaagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374
|
250 260
....*....|....*....|.
gi 110189314 243 NFLSLGGLPPFLGFLPKWIVI 263
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLV 395
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
287-335 |
6.96e-06 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 42.63 E-value: 6.96e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 110189314 287 FFYLRICFSAFM-LNYFENNWMMVSQTNNF-NMNLYLILSFMSIFGLFLIS 335
Cdd:pfam06444 1 FFYLRLSYSTTLtLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
155-264 |
2.30e-04 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 42.63 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 155 ILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWM---IYFMFYS-----LLSFILCFMFNIFKCFHLNQL 226
Cdd:PRK12663 280 AITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDmvvktALFLIAGSLVRLTGYRSLQYL 359
|
90 100 110
....*....|....*....|....*....|....*...
gi 110189314 227 FSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQ 264
Cdd:PRK12663 360 GGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
104-192 |
3.03e-04 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 42.72 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 104 KSGAAPFHFWFPNLMEGLTWMNA-------------LLL---------MTWQKLaplmLIsylnlnnlllISVILSVIIG 161
Cdd:PRK12650 221 KSAQFPFHFWLPEAMAAITPVSAflhaaavvkagiyLLLrfspvfhdvAVWNWL----LI----------IVGMITALMG 286
|
90 100 110
....*....|....*....|....*....|.
gi 110189314 162 AIGGLNQTSLRKLMAFSSINHLGWMLSALKI 192
Cdd:PRK12650 287 AVFAVQKTDLKKLTAYSTVSQLGWIVATIGV 317
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
95-272 |
6.26e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 41.28 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 95 SIMLSTLLLKSGAAPFHFWFPNL-MEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLISVILSVIIGAIG--------- 164
Cdd:PRK08676 210 LFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAAEQFSNVLIGLGifsiavaaf 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 165 -GLNQTSLRKLMAFSSINHLGWMLSALKISESI---WMIYFMF-YSLLSFILCFMFNI----FKCFHLNQLFSWFLQNKI 235
Cdd:PRK08676 290 sMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLalfWMLFHMLaHSLVKSGLFFSAGIlhrqYRSDRFDRIFDVFRLQPV 369
|
170 180 190
....*....|....*....|....*....|....*..
gi 110189314 236 LKFTLFLNFLSLGGLPPFLGFLPKWIVIQQLTFCSSY 272
Cdd:PRK08676 370 AAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVW 406
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
155-264 |
6.36e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 41.49 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 155 ILSVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWM---IYFMFYSLLSFILCFMF-----NIFKCFHLNQL 226
Cdd:PRK12665 281 LLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgaIYYVAHHITVQTTLFLVvglieRQAGSSSLRRL 360
|
90 100 110
....*....|....*....|....*....|....*...
gi 110189314 227 FSWFLQNKILKFTLFLNFLSLGGLPPFLGFLPKWIVIQ 264
Cdd:PRK12665 361 GGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
101-329 |
7.28e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 40.62 E-value: 7.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 101 LLLKSGAAPFHFWFPNLMEGLTWMNALLLMTWQKLAPLMLISYLNLNNLLLIsVILSVIIGAIGGLNQTSLRKLMAFSSI 180
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFL-LLFGLLICFFQMFLLKSYKNLLILSST 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 181 NHLGWMLSALKISESIWMIYFMFYSLLSFILCFMFNIfkcfhlnqlfswflqNKILKFTLFLNFLSLGGLPPFLGFLPKW 260
Cdd:MTH00091 146 ESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNN---------------VNKLNFVSWETLLVFMNLPFSVTFFVKI 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110189314 261 IVIqqltfcSSYFLLMILLMTTLITLFFYLRICFSAFMLNYFENNWMMVSQTNNFNMNLYLILSFMSIF 329
Cdd:MTH00091 211 FSL------SEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
104-190 |
7.18e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 38.21 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 104 KSGAAPFHFWFPNLMEGLTWMNALL-----------LMTwqKLAPLMLISYLNLNNLLLISVIlSVIIGAIGGLNQTSLR 172
Cdd:COG1009 224 KSAQFPLHFWLPDAMEGPTPVSALLhaatmvkagvyLLA--RLSPLFALSPVWLTVVAIIGAI-TALFAALIALAQTDIK 300
|
90
....*....|....*...
gi 110189314 173 KLMAFSSINHLGWMLSAL 190
Cdd:COG1009 301 RVLAYSTVSQLGYMFLAL 318
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
3-266 |
9.08e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 37.67 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 3 NNSSKILFLMMMIIGTLITVTSNSWLAAWMGLEINLLSFIPLVSDNNNFkSTEASLKYFLTQALASTVLLFSVIILM--- 79
Cdd:PRK08668 96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKKE-SRKASLKYFVLSAIGAYAMLYAIFLIYakt 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 80 ----LNNKINIVINEIFISSIMLSTLLL------KSGAAPFHFWFPN------------LMEGLTWMNALLLMTWQKLAP 137
Cdd:PRK08668 175 gtfdFADISQGLINDTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDayseapqsfsavLSGQLSKLGAYGFLLVLYVLP 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110189314 138 LM-----LISYLNLNNLLLISVIL---SVIIGAIGGLNQTSLRKLMAFSSINHLGWMLSALKISESIWMIYFMFYSL-LS 208
Cdd:PRK08668 255 GTklfseFGTYRGVPLFNYILAWLgniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnHA 334
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110189314 209 FILCFMFNIFKCFHLNQLFSWFLQNKILKFTLFLNF-------LSLGGLPPFLGFLPKWIVIQQL 266
Cdd:PRK08668 335 LFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFamylvaiISLAGIPPMSGFASKWLIFEAL 399
|
|
| |
