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Conserved domains on  [gi|109809971|gb|ABG46373|]
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cytochrome b, partial (mitochondrion) [Banza deplanata]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-228 3.43e-172

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 477.35  E-value: 3.43e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00156  44 HYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00156 124 PWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNS 203

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00156 204 NIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAIL 271
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-228 3.43e-172

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 477.35  E-value: 3.43e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00156  44 HYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00156 124 PWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNS 203

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00156 204 NIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAIL 271
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-228 1.15e-89

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 269.35  E-value: 1.15e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:COG1290   63 YYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGY 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVTAMVMIHLLFLHQTGSNNPLG 157
Cdd:COG1290  143 SLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPG 222

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109809971 158 ----LNSDVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPylLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:COG1290  223 perkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGIL 295
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-153 7.86e-68

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 207.22  E-value: 7.86e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:cd00284   46 HYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGY 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109809971  79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSN 153
Cdd:cd00284  126 VLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-151 1.06e-62

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 193.75  E-value: 1.06e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971    1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:pfam00033  37 YYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGY 116

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109809971   79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTG 151
Cdd:pfam00033 117 VLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-228 3.43e-172

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 477.35  E-value: 3.43e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00156  44 HYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00156 124 PWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNS 203

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00156 204 NIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAIL 271
CYTB MTH00119
cytochrome b; Provisional
 1-228 2.09e-153

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 430.86  E-value: 2.09e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00119  55 HYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00119 135 PWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNS 214

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00119 215 NTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282
CYTB MTH00131
cytochrome b; Provisional
 1-228 8.06e-153

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 429.46  E-value: 8.06e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00131  54 HYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00131 134 PWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNS 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00131 214 DADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAIL 281
CYTB MTH00074
cytochrome b; Provisional
 1-228 8.59e-152

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 426.79  E-value: 8.59e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00074  55 HYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00074 135 PWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNS 214

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00074 215 NPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAIL 282
CYTB MTH00145
cytochrome b; Provisional
 1-228 5.03e-150

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 422.01  E-value: 5.03e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00145  55 HYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00145 135 PWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDS 214

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00145 215 DGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAIL 282
CYTB MTH00191
cytochrome b; Provisional
 1-228 7.23e-150

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 421.25  E-value: 7.23e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00191  51 HYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00191 131 PWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNS 210

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00191 211 DSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAIL 278
CYTB MTH00100
cytochrome b; Provisional
 1-228 3.01e-149

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 420.20  E-value: 3.01e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00100  54 HYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00100 134 PWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPS 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00100 214 DSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAIL 281
CYTB MTH00016
cytochrome b; Validated
 1-228 2.28e-143

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 405.21  E-value: 2.28e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00016  55 HYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00016 135 PWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNS 214

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00016 215 NSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAIL 282
CYTB MTH00034
cytochrome b; Validated
 1-228 4.76e-137

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 389.45  E-value: 4.76e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00034  54 HYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00034 134 PWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNS 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00034 214 NYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAIL 281
CYTB MTH00224
cytochrome b; Provisional
 1-228 3.63e-118

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 341.52  E-value: 3.63e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00224  55 HYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00224 135 PWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINA 214

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00224 215 DSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAIL 282
CYTB MTH00022
cytochrome b; Validated
 1-228 2.68e-115

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 333.98  E-value: 2.68e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00022  53 HYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVL 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00022 133 PWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNS 212

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00022 213 SVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAIL 280
CYTB MTH00053
cytochrome b; Provisional
 1-228 1.80e-114

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 332.06  E-value: 1.80e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00053  55 HYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00053 135 PWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRS 214

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00053 215 DIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAIL 282
CYTB MTH00033
cytochrome b; Provisional
 1-228 2.18e-90

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 271.04  E-value: 2.18e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00033  51 HYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00033 131 PWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVG 210

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTlLEPY---LLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00033 211 LSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-228 1.15e-89

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 269.35  E-value: 1.15e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:COG1290   63 YYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGY 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVTAMVMIHLLFLHQTGSNNPLG 157
Cdd:COG1290  143 SLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPG 222

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109809971 158 ----LNSDVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPylLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:COG1290  223 perkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGIL 295
CYTB MTH00086
cytochrome b; Provisional
 1-228 2.29e-89

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 267.19  E-value: 2.29e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVL 80
Cdd:MTH00086  43 YYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  81 PWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGLNS 160
Cdd:MTH00086 123 VWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHG 202

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGfIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00086 203 DYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAIL 269
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-153 7.86e-68

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 207.22  E-value: 7.86e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:cd00284   46 HYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGY 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109809971  79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSN 153
Cdd:cd00284  126 VLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-228 1.16e-64

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 204.06  E-value: 1.16e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   2 YTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMHTWMTGVIILFLVMGTAFMGYVLP 81
Cdd:MTH00046  46 YVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  82 WGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTGSNNPLGL-NS 160
Cdd:MTH00046 126 WHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNG 205

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109809971 161 DVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:MTH00046 206 YSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAML 273
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-151 1.06e-62

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 193.75  E-value: 1.06e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971    1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:pfam00033  37 YYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGY 116

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109809971   79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVLPFIVTAMVMIHLLFLHQTG 151
Cdd:pfam00033 117 VLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
35-200 2.04e-49

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 159.33  E-value: 2.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   35 SFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVW 112
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971  113 GGFAVDNATLTRFFTFHF-VLPFIVTAMVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMIASLIFLTL 191
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 109809971  192 LEPYLLGDP 200
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-156 6.41e-30

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 110.57  E-value: 6.41e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:PRK03735  65 YYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGY 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 109809971  79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVTAMVMIHLLFLHQTGSNNPL 156
Cdd:PRK03735 145 LLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-156 1.58e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 106.73  E-value: 1.58e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109809971   1 HYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNFMH--TWMTGVIILFLVMGTAFMGY 78
Cdd:CHL00070  57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGY 136

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 109809971  79 VLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFH-FVLPFIVTAMVMIHLLFLHQTGSNNPL 156
Cdd:CHL00070 137 SLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 154-228 4.13e-24

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 93.48  E-value: 4.13e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109809971 154 NPLGLNSDVDKIPFHPYFSFKDVFGFIVMIASLIFLTLLEPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAIL 75
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
205-228 7.31e-10

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 54.41  E-value: 7.31e-10
                          10        20
                  ....*....|....*....|....
gi 109809971  205 PANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAIL 24
petD CHL00058
cytochrome b6/f complex subunit IV
 183-228 2.10e-05

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 43.45  E-value: 2.10e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 109809971 183 IASLIFLTLLEPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAIL 228
Cdd:CHL00058  48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQIL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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