|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 692.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
9-373 |
1.24e-116 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 344.08 E-value: 1.24e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 9 PIMKLINHSLiDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGAS 88
Cdd:COG1290 19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 89 MFFICLFLHVGRGLYYGSF-----LLletWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQW 163
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 164 VWGGYSIDNPTLTRFFTLH-FTLPFIITAFTVLHLLFLHETGSNNPCGI----PSNSDKIPFHPYYTIKDMLGLVLLILL 238
Cdd:COG1290 175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGV 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 239 LMTLVLFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVP--NKLGGVLALLMSILILMIIPMLHKSKQQSMM 316
Cdd:COG1290 255 FALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPR 332
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 109689566 317 FRPFSQFTLWLLITVLLTLTWIGSQPVnqPFIMIGQVASMMYFTTILILMPLASMIE 373
Cdd:COG1290 333 YRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
6.91e-88 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 263.84 E-value: 6.91e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 9 PIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 89 MFFICLFLHVGRGLYYGSF--LLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 109689566 167 GYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
1.36e-79 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 242.29 E-value: 1.36e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 18 LIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 98 VGRGLYYGSF--LLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSIDNPTL 175
Cdd:pfam00033 81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 109689566 176 TRFFTLHFTLPFIITAFTVLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
258-319 |
1.15e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 53.65 E-value: 1.15e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109689566 258 PANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHK-SKQQSMMFRP 319
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRP 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 692.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 630.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00119 2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00119 82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 603.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00131 1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00131 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 592.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00074 2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00074 82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
4-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 576.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 4 MRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLH 83
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 84 ANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQW 163
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 164 VWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTLV 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQF 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 109689566 324 TLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPL 368
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
11-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 555.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 11 MKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMF 90
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 91 FICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSI 170
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 171 DNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTLVLFSPDLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQFTLWLLIT 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 109689566 331 VLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILM 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
3-377 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 547.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 3 PMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYL 82
Cdd:MTH00034 3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 83 HANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQ 162
Cdd:MTH00034 83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 163 WVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTL 242
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQ 322
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 109689566 323 FTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLL 377
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-377 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 546.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00145 2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00145 82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFtTILILMPLASMIENNLL 377
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF-LFFLILPLVQKLWDNIL 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-378 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 520.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 1 MIPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIR 80
Cdd:MTH00016 2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 81 YLHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00016 82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 161 VQWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLM 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 241 TLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPF 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 321 SQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFtTILILMPLASMIENNLLK 378
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
2-378 |
1.74e-169 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 478.04 E-value: 1.74e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 2 IPMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRY 81
Cdd:MTH00022 1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 82 LHANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLV 161
Cdd:MTH00022 81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 162 QWVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMT 241
Cdd:MTH00022 161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFS 321
Cdd:MTH00022 241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLG 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 109689566 322 QFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00022 321 RMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
4-378 |
3.77e-168 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 474.58 E-value: 3.77e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 4 MRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLH 83
Cdd:MTH00053 5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 84 ANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQW 163
Cdd:MTH00053 85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 164 VWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTLV 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQF 323
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 109689566 324 TLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFTTILILMPLASMIENNLLK 378
Cdd:MTH00053 325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
3-378 |
5.86e-161 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 456.31 E-value: 5.86e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 3 PMRKSNPIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYL 82
Cdd:MTH00224 4 PFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 83 HANGASMFFICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQ 162
Cdd:MTH00224 84 HANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 163 WVWGGYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTL 242
Cdd:MTH00224 164 WIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLM 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQ 322
Cdd:MTH00224 244 VLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQ 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 109689566 323 FTLWLLITVLLTLTWIGSQPVNQPFIMIGQVASMMYFtTILILMPLASMIENNLLK 378
Cdd:MTH00224 324 LLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
16-374 |
8.25e-126 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 367.34 E-value: 8.25e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 16 HSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFFICLF 95
Cdd:MTH00033 13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 96 LHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSIDNPTL 175
Cdd:MTH00033 93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 176 TRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTLVLFS--PDLLGDP 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQFTLWLLITVLL 333
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 109689566 334 TLTWIGSQPVN-QPFIMIGQVASMMYFTTILILMPLASMIEN 374
Cdd:MTH00033 333 ILTWIGSAPAGaDPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
9-373 |
1.24e-116 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 344.08 E-value: 1.24e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 9 PIMKLINHSLiDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGAS 88
Cdd:COG1290 19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 89 MFFICLFLHVGRGLYYGSF-----LLletWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQW 163
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 164 VWGGYSIDNPTLTRFFTLH-FTLPFIITAFTVLHLLFLHETGSNNPCGI----PSNSDKIPFHPYYTIKDMLGLVLLILL 238
Cdd:COG1290 175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGV 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 239 LMTLVLFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVP--NKLGGVLALLMSILILMIIPMLHKSKQQSMM 316
Cdd:COG1290 255 FALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPR 332
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 109689566 317 FRPFSQFTLWLLITVLLTLTWIGSQPVnqPFIMIGQVASMMYFTTILILMPLASMIE 373
Cdd:COG1290 333 YRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
14-366 |
8.35e-108 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 320.35 E-value: 8.35e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 14 INHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFFIC 93
Cdd:MTH00086 3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 94 LFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSIDNP 173
Cdd:MTH00086 83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 174 TLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDmLGLVLLILLLMTLVLFSPDLLGDP 253
Cdd:MTH00086 163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSkqqSMMFRPFSQFTLWLLITVLL 333
Cdd:MTH00086 242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNV 318
|
330 340 350
....*....|....*....|....*....|...
gi 109689566 334 TLTWIGSQPVNQPFIMIGQVASMMYFTTILILM 366
Cdd:MTH00086 319 ILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
6.91e-88 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 263.84 E-value: 6.91e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 9 PIMKLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 89 MFFICLFLHVGRGLYYGSF--LLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 109689566 167 GYSIDNPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
12-357 |
1.88e-85 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 263.38 E-value: 1.88e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 12 KLINHSLIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFF 91
Cdd:MTH00046 3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 92 ICLFLHVGRGLYYGSFLLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSID 171
Cdd:MTH00046 83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 172 NPTLTRFFTLHFTLPFIITAFTVLHLLFLHETGSNNPCGIPSN-SDKIPFHPYYTIKDMLGLVLLILLLMTLVLFSPDLL 250
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGvLALLMSILILMIIPMLHKSKQQSMmfrpFSQFTLWLLIT 330
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317
|
330 340
....*....|....*....|....*..
gi 109689566 331 VLLTLTWIGSQPVNQPFIMIGQVASMM 357
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSVL 344
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
1.36e-79 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 242.29 E-value: 1.36e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 18 LIDLPTPSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 98 VGRGLYYGSF--LLLETWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSIDNPTL 175
Cdd:pfam00033 81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 109689566 176 TRFFTLHFTLPFIITAFTVLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
207-354 |
9.22e-42 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 143.56 E-value: 9.22e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 207 NPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSVPN 286
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109689566 287 KLGGVLALLMSILILMIIPMLHKSKQQSmMFRPFSQFTLWLLITVLLTLTWIGSQPVNQPFIMIGQVA 354
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
88-253 |
8.90e-40 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 138.91 E-value: 8.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 88 SMFFICLFLHVGRGLYYGSFLLLE--TWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVW 165
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 166 GGYSIDNPTLTRFFTLHFT-LPFIITAFTVLHLLFLHETGSNNPCGIPSNSDKIPFHPYYTIKDMLGLVLLILLLMTLVL 244
Cdd:pfam13631 81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 109689566 245 FSPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
258-358 |
5.29e-37 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 129.52 E-value: 5.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 258 PANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHKSKQQSMMFRPFSQFTLWLLITVLLTLTW 337
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 109689566 338 IGSQPVNQPFIMIGQVASMMY 358
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
33-208 |
7.91e-33 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 122.51 E-value: 7.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 33 FGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSFLLLE- 111
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 112 -TWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSIDNPTLTRFFTLH-FTLPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170
....*....|....*....
gi 109689566 190 TAFTVLHLLFLHETGSNNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
24-208 |
2.34e-29 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 112.89 E-value: 2.34e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 24 PSNISAWWNFGSLLAICLILQIITGLFLAMHYSPSTSSAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109689566 104 YGSFLLLE--TWNIGIALLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVQWVWGGYSIDNPTLTRFFTL 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*...
gi 109689566 182 H-FTLPFIITAFTVLHLLFLHETGSNNP 208
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
258-319 |
6.84e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 57.32 E-value: 6.84e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109689566 258 PANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHK-SKQQSMMFRP 319
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRP 127
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
258-321 |
1.99e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 55.96 E-value: 1.99e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 109689566 258 PANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHK-SKQQSMMFRPFS 321
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVA 130
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
258-319 |
1.15e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 53.65 E-value: 1.15e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109689566 258 PANPLNTPPHIKPEWYFLFAYAILRSVPNKLGGVLALLMSILILMIIPMLHK-SKQQSMMFRP 319
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRP 127
|
|
| |
