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Conserved domains on  [gi|109627785|gb|ABG34326|]
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cytochrome b, partial (mitochondrion) [Clarias gariepinus]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-187 2.13e-145

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 416.75  E-value: 2.13e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAA 191
CYTB super family cl31802
cytochrome b; Provisional
 188-373 1.01e-144

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 414.82  E-value: 1.01e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIA 190
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-187 2.13e-145

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 416.75  E-value: 2.13e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAA 191
CYTB MTH00131
cytochrome b; Provisional
 188-373 1.01e-144

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 414.82  E-value: 1.01e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIA 190
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-187 3.75e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 254.22  E-value: 3.75e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   5 PLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 84
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  85 FFFICIYLHIGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWG 162
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180
                 ....*....|....*....|....*
gi 109627785 163 GFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAV 185
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 192-372 4.87e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 253.83  E-value: 4.87e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 192 PLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 271
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 272 FFFICIYLHIGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWG 349
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180
                 ....*....|....*....|...
gi 109627785 350 GFSVDNATLTRFFAFHFLLPFTI 372
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFII 183
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-187 1.66e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.89  E-value: 1.66e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   14 LIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   94 IGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170
                  ....*....|....*.
gi 109627785  172 TRFFAFHFLLPFTIIA 187
Cdd:pfam00033 161 TRFFSLHFLLPFILAI 176
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
201-373 2.74e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.12  E-value: 2.74e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  201 LIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLH 280
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  281 IGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATL 358
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170
                  ....*....|....*
gi 109627785  359 TRFFAFHFLLPFTII 373
Cdd:pfam00033 161 TRFFSLHFLLPFILA 175
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-187 3.02e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 230.06  E-value: 3.02e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   5 PLFKIVNDaLIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 84
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  85 FFFICIYLHIGRGLYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180
                 ....*....|....*....|....*...
gi 109627785 161 WGGFSVDNATLTRFFAFH-FLLPFTIIA 187
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLLA 203
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
192-373 9.42e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 228.91  E-value: 9.42e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 192 PLFKIVNDaLIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 271
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 272 FFFICIYLHIGRGLYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180
                 ....*....|....*....|....*..
gi 109627785 348 WGGFSVDNATLTRFFAFH-FLLPFTII 373
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLL 202
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-187 2.13e-145

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 416.75  E-value: 2.13e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAA 191
CYTB MTH00131
cytochrome b; Provisional
 188-373 1.01e-144

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 414.82  E-value: 1.01e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIA 190
CYTB MTH00119
cytochrome b; Provisional
 183-373 2.14e-136

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 393.88  E-value: 2.14e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 183 FTIIARKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWII 262
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 263 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDA 342
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190
                 ....*....|....*....|....*....|.
gi 109627785 343 LVQWIWGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIA 191
CYTB MTH00119
cytochrome b; Provisional
 1-187 3.74e-136

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 393.11  E-value: 3.74e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00119 166 WGGFSVDNPTLTRFFALHFLLPFLIAG 192
CYTB MTH00100
cytochrome b; Provisional
 1-194 6.50e-133

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 384.76  E-value: 6.50e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIARKT-HPLF 194
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFIITALAMvHLLF 199
CYTB MTH00100
cytochrome b; Provisional
 188-372 5.39e-132

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 382.45  E-value: 5.39e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180
                 ....*....|....*....|....*
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTI 372
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFII 189
CYTB MTH00074
cytochrome b; Provisional
 1-194 3.13e-131

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 380.57  E-value: 3.13e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00074   6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00074  86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTII-ARKTHPLF 194
Cdd:MTH00074 166 WGGFSVDKATLTRFFAFHFLLPFLIAgASIIHLLF 200
CYTB MTH00074
cytochrome b; Provisional
 188-373 6.09e-131

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 379.80  E-value: 6.09e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00074   6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00074  86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00074 166 WGGFSVDKATLTRFFAFHFLLPFLIA 191
CYTB MTH00191
cytochrome b; Provisional
 1-187 3.37e-129

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 375.02  E-value: 3.37e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAA 188
CYTB MTH00191
cytochrome b; Provisional
 188-373 1.23e-128

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 373.48  E-value: 1.23e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIA 187
CYTB MTH00156
cytochrome b; Provisional
 7-187 7.57e-127

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 368.73  E-value: 7.57e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   7 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFF 86
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  87 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSV 166
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180
                 ....*....|....*....|.
gi 109627785 167 DNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILA 181
CYTB MTH00156
cytochrome b; Provisional
 194-373 2.54e-126

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 367.18  E-value: 2.54e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 194 FKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFF 273
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 274 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSV 353
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180
                 ....*....|....*....|
gi 109627785 354 DNATLTRFFAFHFLLPFTII 373
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIIL 180
CYTB MTH00145
cytochrome b; Provisional
 1-187 1.51e-119

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 350.74  E-value: 1.51e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00145   6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00145  86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVILG 192
CYTB MTH00145
cytochrome b; Provisional
 188-372 3.76e-119

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 349.97  E-value: 3.76e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00145   6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00145  86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                        170       180
                 ....*....|....*....|....*
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTI 372
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVI 190
CYTB MTH00034
cytochrome b; Validated
 1-187 4.89e-119

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 349.77  E-value: 4.89e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAA 191
CYTB MTH00034
cytochrome b; Validated
 188-373 1.91e-118

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 348.23  E-value: 1.91e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIA 190
CYTB MTH00016
cytochrome b; Validated
 1-187 3.98e-113

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 334.72  E-value: 3.98e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVIAA 192
CYTB MTH00016
cytochrome b; Validated
 188-372 1.11e-112

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 333.57  E-value: 1.11e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                        170       180
                 ....*....|....*....|....*
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTI 372
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVI 190
CYTB MTH00224
cytochrome b; Provisional
 1-187 5.33e-98

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 296.06  E-value: 5.33e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMG 192
CYTB MTH00224
cytochrome b; Provisional
 188-373 1.15e-97

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 295.29  E-value: 1.15e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIM 191
CYTB MTH00022
cytochrome b; Validated
 1-187 2.86e-95

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 288.91  E-value: 2.86e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAF 190
CYTB MTH00022
cytochrome b; Validated
 188-372 4.82e-95

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 288.52  E-value: 4.82e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180
                 ....*....|....*....|....*
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTI 372
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFIL 188
CYTB MTH00053
cytochrome b; Provisional
 1-187 2.60e-90

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 276.20  E-value: 2.60e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   1 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 80
Cdd:MTH00053   6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  81 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:MTH00053  86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                        170       180
                 ....*....|....*....|....*..
gi 109627785 161 WGGFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00053 166 WGGFSVSNATLNRFYSLHYLLPFILAG 192
CYTB MTH00053
cytochrome b; Provisional
 188-373 5.25e-90

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 275.43  E-value: 5.25e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 188 RKTHPLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHA 267
Cdd:MTH00053   6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 268 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:MTH00053  86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                        170       180
                 ....*....|....*....|....*.
gi 109627785 348 WGGFSVDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00053 166 WGGFSVSNATLNRFYSLHYLLPFILA 191
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-187 3.75e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 254.22  E-value: 3.75e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   5 PLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 84
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  85 FFFICIYLHIGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWG 162
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180
                 ....*....|....*....|....*
gi 109627785 163 GFSVDNATLTRFFAFHFLLPFTIIA 187
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAV 185
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 192-372 4.87e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 253.83  E-value: 4.87e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 192 PLFKIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 271
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 272 FFFICIYLHIGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWG 349
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180
                 ....*....|....*....|...
gi 109627785 350 GFSVDNATLTRFFAFHFLLPFTI 372
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFII 183
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-187 1.66e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.89  E-value: 1.66e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   14 LIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   94 IGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170
                  ....*....|....*.
gi 109627785  172 TRFFAFHFLLPFTIIA 187
Cdd:pfam00033 161 TRFFSLHFLLPFILAI 176
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
201-373 2.74e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.12  E-value: 2.74e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  201 LIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLH 280
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  281 IGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATL 358
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170
                  ....*....|....*
gi 109627785  359 TRFFAFHFLLPFTII 373
Cdd:pfam00033 161 TRFFSLHFLLPFILA 175
CYTB MTH00033
cytochrome b; Provisional
 6-187 2.02e-75

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 238.30  E-value: 2.02e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   6 LFKIVNDaLIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASF 85
Cdd:MTH00033   8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  86 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFS 165
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180
                 ....*....|....*....|..
gi 109627785 166 VDNATLTRFFAFHFLLPFTIIA 187
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVG 188
CYTB MTH00033
cytochrome b; Provisional
 193-373 2.08e-75

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 238.30  E-value: 2.08e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 193 LFKIVNDaLIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASF 272
Cdd:MTH00033   8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 273 FFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFS 352
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180
                 ....*....|....*....|.
gi 109627785 353 VDNATLTRFFAFHFLLPFTII 373
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLV 187
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-187 3.02e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 230.06  E-value: 3.02e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   5 PLFKIVNDaLIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 84
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  85 FFFICIYLHIGRGLYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 160
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180
                 ....*....|....*....|....*...
gi 109627785 161 WGGFSVDNATLTRFFAFH-FLLPFTIIA 187
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLLA 203
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
192-373 9.42e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 228.91  E-value: 9.42e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 192 PLFKIVNDaLIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGAS 271
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 272 FFFICIYLHIGRGLYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWI 347
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180
                 ....*....|....*....|....*..
gi 109627785 348 WGGFSVDNATLTRFFAFH-FLLPFTII 373
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLL 202
CYTB MTH00086
cytochrome b; Provisional
 8-186 2.53e-67

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 216.34  E-value: 2.53e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   8 KIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFF 87
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  88 ICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVD 167
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170
                 ....*....|....*....
gi 109627785 168 NATLTRFFAFHFLLPFTII 186
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLL 179
CYTB MTH00086
cytochrome b; Provisional
 195-373 2.53e-67

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 216.34  E-value: 2.53e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 195 KIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFF 274
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 275 ICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVD 354
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170
                 ....*....|....*....
gi 109627785 355 NATLTRFFAFHFLLPFTII 373
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLL 179
CYTB MTH00046
cytochrome b; Validated
 8-186 1.12e-42

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 152.06  E-value: 1.12e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   8 KIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFF 87
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  88 ICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVD 167
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170
                 ....*....|....*....
gi 109627785 168 NATLTRFFAFHFLLPFTII 186
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVIL 181
CYTB MTH00046
cytochrome b; Validated
 195-373 1.12e-42

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 152.06  E-value: 1.12e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 195 KIVNDALIDLPAPSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFF 274
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 275 ICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVD 354
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170
                 ....*....|....*....
gi 109627785 355 NATLTRFFAFHFLLPFTII 373
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVIL 181
PRK03735 PRK03735
cytochrome b6; Provisional
 29-187 1.03e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 129.83  E-value: 1.03e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  29 FGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 107
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 108 -TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAFH-FLLPFTI 185
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203


                 ..
gi 109627785 186 IA 187
Cdd:PRK03735 204 AV 205
PRK03735 PRK03735
cytochrome b6; Provisional
 216-373 1.61e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 129.45  E-value: 1.61e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 216 FGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 294
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 295 -TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAFH-FLLPFTI 372
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203


                 .
gi 109627785 373 I 373
Cdd:PRK03735 204 A 204
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-187 5.81e-30

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 113.11  E-value: 5.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785   84 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIW 161
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100
                  ....*....|....*....|....*..
gi 109627785  162 GGFSVDNATLTRFFAFHF-LLPFTIIA 187
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILA 107
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
271-373 2.09e-29

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 111.56  E-value: 2.09e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  271 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIW 348
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100
                  ....*....|....*....|....*.
gi 109627785  349 GGFSVDNATLTRFFAFHF-LLPFTII 373
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLIL 106
petB CHL00070
cytochrome b6
 20-183 2.97e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 109.81  E-value: 2.97e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785  20 PSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLHIGRGLY 99
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 100 YGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAF 177
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                 ....*..
gi 109627785 178 H-FLLPF 183
Cdd:CHL00070 187 HtFVLPL 193
petB CHL00070
cytochrome b6
 207-370 2.97e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 109.81  E-value: 2.97e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 207 PSNISAWWNFGSLLLLCLGVQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWIIRNLHANGASFFFICIYLHIGRGLY 286
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109627785 287 YGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAF 364
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                 ....*..
gi 109627785 365 H-FLLPF 370
Cdd:CHL00070 187 HtFVLPL 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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