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Conserved domains on  [gi|109392276|ref|YP_655086|]
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gp90 [Mycobacterium phage Llij]

Protein Classification

GIY-YIG nuclease family protein( domain architecture ID 10603114)

GIY-YIG nuclease family protein

CATH:  3.40.1440.10
Gene Ontology:  GO:0004518
PubMed:  16646971
SCOP:  3000597

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MUG113 pfam13455
Meiotically up-regulated gene 113; This is a family of fungal proteins found to be ...
 137-194 1.67e-05

Meiotically up-regulated gene 113; This is a family of fungal proteins found to be up-regulated in meiosis.


:

Pssm-ID: 372608  Cd Length: 73  Bit Score: 41.51  E-value: 1.67e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109392276  137 KIGTSRNLKARIGVIQPE--------DCMGYEPGDRKLERKRHDQFKHLRVSG--EWFMIGPDLVRHV 194
Cdd:pfam13455   2 KIGRTRNVEKRLKELNSQspfkfdvvASYESTNDARKLERLLHRELKEYRLNGgnEWFKLNLEQLKEV 69
 
Name Accession Description Interval E-value
MUG113 pfam13455
Meiotically up-regulated gene 113; This is a family of fungal proteins found to be ...
 137-194 1.67e-05

Meiotically up-regulated gene 113; This is a family of fungal proteins found to be up-regulated in meiosis.


Pssm-ID: 372608  Cd Length: 73  Bit Score: 41.51  E-value: 1.67e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109392276  137 KIGTSRNLKARIGVIQPE--------DCMGYEPGDRKLERKRHDQFKHLRVSG--EWFMIGPDLVRHV 194
Cdd:pfam13455   2 KIGRTRNVEKRLKELNSQspfkfdvvASYESTNDARKLERLLHRELKEYRLNGgnEWFKLNLEQLKEV 69
 
Name Accession Description Interval E-value
MUG113 pfam13455
Meiotically up-regulated gene 113; This is a family of fungal proteins found to be ...
 137-194 1.67e-05

Meiotically up-regulated gene 113; This is a family of fungal proteins found to be up-regulated in meiosis.


Pssm-ID: 372608  Cd Length: 73  Bit Score: 41.51  E-value: 1.67e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109392276  137 KIGTSRNLKARIGVIQPE--------DCMGYEPGDRKLERKRHDQFKHLRVSG--EWFMIGPDLVRHV 194
Cdd:pfam13455   2 KIGRTRNVEKRLKELNSQspfkfdvvASYESTNDARKLERLLHRELKEYRLNGgnEWFKLNLEQLKEV 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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