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Conserved domains on  [gi|1093423656|gb|AOZ64864|]
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endonuclease VII [Mycobacterium phage Louie6]

Protein Classification

endonuclease VII domain-containing protein( domain architecture ID 10502970)

endonuclease VII domain-containing protein similar to the C-terminal domain of Helicobacter pylori beta beta alpha-Me restriction endonuclease Hpy99I that recognizes the CGWCG target sequence and cleaves it with unusual stagger (five nucleotide 5'-recessed ends)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Endonuclease_7 pfam02945
Recombination endonuclease VII;
60-141 2.37e-34

Recombination endonuclease VII;


:

Pssm-ID: 397205  Cd Length: 82  Bit Score: 115.27  E-value: 2.37e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093423656  60 ETRIFATYGITAEEYWAIYEFQGGRCYGCR-RANGKRKRLSVDHDHETGIVRGLLCTACNRNvLGHLRDEREAFQRFIDY 138
Cdd:pfam02945   1 ERRLGSLYGITAEEYWAIYEAQGGRCAICQkRANGGTPALAVDHDHDTGHVRGLLCGPCNTG-LGKLRDDPEALERAIDY 79


                  ...
gi 1093423656 139 LDN 141
Cdd:pfam02945  80 LES 82
 
Name Accession Description Interval E-value
Endonuclease_7 pfam02945
Recombination endonuclease VII;
60-141 2.37e-34

Recombination endonuclease VII;


Pssm-ID: 397205  Cd Length: 82  Bit Score: 115.27  E-value: 2.37e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093423656  60 ETRIFATYGITAEEYWAIYEFQGGRCYGCR-RANGKRKRLSVDHDHETGIVRGLLCTACNRNvLGHLRDEREAFQRFIDY 138
Cdd:pfam02945   1 ERRLGSLYGITAEEYWAIYEAQGGRCAICQkRANGGTPALAVDHDHDTGHVRGLLCGPCNTG-LGKLRDDPEALERAIDY 79


                  ...
gi 1093423656 139 LDN 141
Cdd:pfam02945  80 LES 82
49 PHA02565
recombination endonuclease VII; Provisional
 72-119 5.63e-08

recombination endonuclease VII; Provisional


Pssm-ID: 177395 [Multi-domain]  Cd Length: 157  Bit Score: 49.35  E-value: 5.63e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1093423656  72 EEYWAIYEFQGGRCYGCRRA-NGKRKRLSVDHDHE-----TGIVRGLLCTACNR 119
Cdd:PHA02565   10 EEKQKLFEAQNGICPLCKRElDGDVSKNHLDHDHElngpnAGRVRGLLCNLCNA 63
 
Name Accession Description Interval E-value
Endonuclease_7 pfam02945
Recombination endonuclease VII;
60-141 2.37e-34

Recombination endonuclease VII;


Pssm-ID: 397205  Cd Length: 82  Bit Score: 115.27  E-value: 2.37e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093423656  60 ETRIFATYGITAEEYWAIYEFQGGRCYGCR-RANGKRKRLSVDHDHETGIVRGLLCTACNRNvLGHLRDEREAFQRFIDY 138
Cdd:pfam02945   1 ERRLGSLYGITAEEYWAIYEAQGGRCAICQkRANGGTPALAVDHDHDTGHVRGLLCGPCNTG-LGKLRDDPEALERAIDY 79


                  ...
gi 1093423656 139 LDN 141
Cdd:pfam02945  80 LES 82
49 PHA02565
recombination endonuclease VII; Provisional
 72-119 5.63e-08

recombination endonuclease VII; Provisional


Pssm-ID: 177395 [Multi-domain]  Cd Length: 157  Bit Score: 49.35  E-value: 5.63e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1093423656  72 EEYWAIYEFQGGRCYGCRRA-NGKRKRLSVDHDHE-----TGIVRGLLCTACNR 119
Cdd:PHA02565   10 EEKQKLFEAQNGICPLCKRElDGDVSKNHLDHDHElngpnAGRVRGLLCNLCNA 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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