|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
68-369 |
1.96e-146 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 415.96 E-value: 1.96e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 68 RLVRLRARLARSNNMLGKGLLALLSRDR-IDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVKKMLRE 146
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKkIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 147 ELVKIVRPDmDRELKT---------------AGsdgnpgvvlvvgvngvgKTTTVGKIARVMVADGQTLLLGAADTFRAA 211
Cdd:COG0552 81 ELLEILDPV-DKPLAIeekkpfvilvvgvngVG-----------------KTTTIGKLAHRLKAEGKSVLLAAGDTFRAA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 212 ASEQLTTWGDRVGVKTVRSeKEGADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAP--VTE 289
Cdd:COG0552 143 AIEQLEVWGERVGVPVIAQ-KEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPdaPHE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 290 VLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALLD 369
Cdd:COG0552 222 VLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
62-369 |
3.46e-145 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 413.73 E-value: 3.46e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 62 PDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVK 141
Cdd:PRK10416 10 KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 142 KMLREELVKIVRPdMDRELKT---------------AGsdgnpgvvlvvgvngvgKTTTVGKIARVMVADGQTLLLGAAD 206
Cdd:PRK10416 90 ELLKEELAEILEP-VEKPLNIeekkpfvilvvgvngVG-----------------KTTTIGKLAHKYKAQGKKVLLAAGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 207 TFRAAASEQLTTWGDRVGVKTVRSeKEGADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAP 286
Cdd:PRK10416 152 TFRAAAIEQLQVWGERVGVPVIAQ-KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADP 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 287 --VTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFV 364
Cdd:PRK10416 231 daPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFV 310
|
....*
gi 1092592214 365 DALLD 369
Cdd:PRK10416 311 DALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
96-368 |
8.83e-106 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 311.88 E-value: 8.83e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 96 IDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVKKMLREELVKIVRPDMDRE--LKTAGSDGNPGVVL 173
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtdLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 174 VVGVNGVGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVrSEKEGADPASVAFDAVKAGKEQGV 253
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI-KQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 254 DTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAPV--TEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGI 331
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDapDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 1092592214 332 VVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALL 368
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
182-367 |
1.54e-93 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 277.92 E-value: 1.54e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSeKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:cd17874 13 KTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQ-NEGADPAAVAFDAIQAAKARGIDVVLIDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEKEAPV--TEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEEL 339
Cdd:cd17874 92 GRLHTKKNLMEELKKIKRVIKKKDPEapHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKGGIVLSIADEL 171
|
170 180
....*....|....*....|....*...
gi 1092592214 340 GVPVKLIGLGEGPDDLAPFDPEAFVDAL 367
Cdd:cd17874 172 KIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
182-367 |
3.12e-82 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 249.00 E-value: 3.12e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:pfam00448 13 KTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVP-VFGSKTGADPAAVAFDAVEKAKAENYDVVLVDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIekeAPvTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:pfam00448 92 GRLQNDKNLMDELKKIKRVV---AP-DEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSIVAETGK 167
|
170 180
....*....|....*....|....*.
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPEAFVDAL 367
Cdd:pfam00448 168 PIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
182-369 |
1.14e-80 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 245.01 E-value: 1.14e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIA-RVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEkEGADPASVAFDAVKAGKEQGVDTVLVDT 260
Cdd:smart00962 14 KTTTIAKLAaRLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGG-EGADPVAVAKDAVELAKARGYDVVLIDT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 261 AGRLQNKSGLMDQLGKIKRVIEKEapvtEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELG 340
Cdd:smart00962 93 AGRLHNDENLMEELKKIKRVIKPD----EVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALSIAAETG 168
|
170 180
....*....|....*....|....*....
gi 1092592214 341 VPVKLIGLGEGPDDLAPFDPEAFVDALLD 369
Cdd:smart00962 169 LPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
68-369 |
1.96e-146 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 415.96 E-value: 1.96e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 68 RLVRLRARLARSNNMLGKGLLALLSRDR-IDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVKKMLRE 146
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKkIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 147 ELVKIVRPDmDRELKT---------------AGsdgnpgvvlvvgvngvgKTTTVGKIARVMVADGQTLLLGAADTFRAA 211
Cdd:COG0552 81 ELLEILDPV-DKPLAIeekkpfvilvvgvngVG-----------------KTTTIGKLAHRLKAEGKSVLLAAGDTFRAA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 212 ASEQLTTWGDRVGVKTVRSeKEGADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAP--VTE 289
Cdd:COG0552 143 AIEQLEVWGERVGVPVIAQ-KEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPdaPHE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 290 VLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALLD 369
Cdd:COG0552 222 VLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
62-369 |
3.46e-145 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 413.73 E-value: 3.46e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 62 PDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVK 141
Cdd:PRK10416 10 KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 142 KMLREELVKIVRPdMDRELKT---------------AGsdgnpgvvlvvgvngvgKTTTVGKIARVMVADGQTLLLGAAD 206
Cdd:PRK10416 90 ELLKEELAEILEP-VEKPLNIeekkpfvilvvgvngVG-----------------KTTTIGKLAHKYKAQGKKVLLAAGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 207 TFRAAASEQLTTWGDRVGVKTVRSeKEGADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAP 286
Cdd:PRK10416 152 TFRAAAIEQLQVWGERVGVPVIAQ-KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADP 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 287 --VTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFV 364
Cdd:PRK10416 231 daPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFV 310
|
....*
gi 1092592214 365 DALLD 369
Cdd:PRK10416 311 DALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
96-368 |
8.83e-106 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 311.88 E-value: 8.83e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 96 IDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVKKMLREELVKIVRPDMDRE--LKTAGSDGNPGVVL 173
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtdLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 174 VVGVNGVGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVrSEKEGADPASVAFDAVKAGKEQGV 253
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI-KQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 254 DTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAPV--TEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGI 331
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDapDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 1092592214 332 VVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALL 368
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
182-367 |
1.54e-93 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 277.92 E-value: 1.54e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSeKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:cd17874 13 KTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQ-NEGADPAAVAFDAIQAAKARGIDVVLIDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEKEAPV--TEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEEL 339
Cdd:cd17874 92 GRLHTKKNLMEELKKIKRVIKKKDPEapHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKGGIVLSIADEL 171
|
170 180
....*....|....*....|....*...
gi 1092592214 340 GVPVKLIGLGEGPDDLAPFDPEAFVDAL 367
Cdd:cd17874 172 KIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
182-367 |
3.12e-82 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 249.00 E-value: 3.12e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:pfam00448 13 KTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVP-VFGSKTGADPAAVAFDAVEKAKAENYDVVLVDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIekeAPvTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:pfam00448 92 GRLQNDKNLMDELKKIKRVV---AP-DEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSIVAETGK 167
|
170 180
....*....|....*....|....*.
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPEAFVDAL 367
Cdd:pfam00448 168 PIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
182-369 |
1.14e-80 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 245.01 E-value: 1.14e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIA-RVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEkEGADPASVAFDAVKAGKEQGVDTVLVDT 260
Cdd:smart00962 14 KTTTIAKLAaRLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGG-EGADPVAVAKDAVELAKARGYDVVLIDT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 261 AGRLQNKSGLMDQLGKIKRVIEKEapvtEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELG 340
Cdd:smart00962 93 AGRLHNDENLMEELKKIKRVIKPD----EVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALSIAAETG 168
|
170 180
....*....|....*....|....*....
gi 1092592214 341 VPVKLIGLGEGPDDLAPFDPEAFVDALLD 369
Cdd:smart00962 169 LPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
182-367 |
1.88e-65 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 206.07 E-value: 1.88e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEkEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:cd03115 13 KTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESY-TGTDPASIAQEAVEKAKLEGYDVLLVDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRViekEAPVtEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:cd03115 92 GRLQKDEPLMEELKKVKEV---ESPD-EVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSIVAETKK 167
|
170 180
....*....|....*....|....*.
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPEAFVDAL 367
Cdd:cd03115 168 PIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
81-368 |
2.05e-58 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 192.49 E-value: 2.05e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 81 NMLGKGLLALLSRDRIDqDVWDEVEETLLLADLGSEPTTRLVEALQQRV----RVEGTSNPAAVKKMLREELVKIVRP-- 154
Cdd:PRK14974 48 GFFDKAKITEIKEKDIE-DLLEELELELLESDVALEVAEEILESLKEKLvgkkVKRGEDVEEIVKNALKEALLEVLSVgd 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 155 --DMDRELKTAGSdgnPGVVLVVGVNGVGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEK 232
Cdd:PRK14974 127 lfDLIEEIKSKGK---PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKY 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 233 eGADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEApvteVLLVIDATTGQNGMVQAKVFGDI 312
Cdd:PRK14974 204 -GADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDL----VIFVGDALAGNDAVEQAREFNEA 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1092592214 313 VDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALL 368
Cdd:PRK14974 279 VGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLL 334
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
182-369 |
3.44e-58 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 194.47 E-value: 3.44e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:COG0541 113 KTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVP-VFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTA 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEkeaPvTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:COG0541 192 GRLHIDEELMDELKAIKAAVN---P-DETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGK 267
|
170 180
....*....|....*....|....*...
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPEAFVDALLD 369
Cdd:COG0541 268 PIKFIGTGEKLDDLEPFHPDRMASRILG 295
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
182-361 |
9.77e-54 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 175.86 E-value: 9.77e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:cd18539 13 KTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVP-VFESGDGQSPVDIAKRALEKAKEEGFDVVIVDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEKeapvTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:cd18539 92 GRLHIDEELMDELKEIKEVLNP----DEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALSIRHVTGK 167
|
170 180
....*....|....*....|
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPE 361
Cdd:cd18539 168 PIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
182-368 |
1.15e-47 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 167.31 E-value: 1.15e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADPASVAFDAVKAGKEQgvDTVLVDTA 261
Cdd:PRK00771 108 KTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP-FYGDPDNKDAVEIAKEGLEKFKKA--DVIIVDTA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEKEapvtEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:PRK00771 185 GRHALEEDLIEEMKEIKEAVKPD----EVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGA 260
|
170 180
....*....|....*....|....*..
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPEAFVDALL 368
Cdd:PRK00771 261 PIKFIGTGEKIDDLERFDPDRFISRLL 287
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
182-364 |
4.87e-45 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 153.12 E-value: 4.87e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEgADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:cd17875 13 KTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTE-KDPVKIAKEGVEKFKKEKFDIIIVDTS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEKEapvtEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGV 341
Cdd:cd17875 92 GRHKQEEELFEEMKQISDAVKPD----EVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALSAVAATGA 167
|
170 180
....*....|....*....|...
gi 1092592214 342 PVKLIGLGEGPDDLAPFDPEAFV 364
Cdd:cd17875 168 PIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
182-367 |
1.82e-31 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 118.10 E-value: 1.82e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVkTVRSEKEGADPASVAFDAVKAGKEQGVDTVLVDTA 261
Cdd:cd17876 13 KSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGV-ELYEKGYGKDPAAVAKEAIKYARDQGFDVVLIDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKrvieKEAPVTEVLLVIDATTGQNGMVQAKVF----GDIVDVT------GIVLTKLDGTA-KGG 330
Cdd:cd17876 92 GRMQNNEPLMRALAKLI----KENNPDLVLFVGEALVGNDAVDQLKKFnqalADYSPSDnprlidGIVLTKFDTIDdKVG 167
|
170 180 190
....*....|....*....|....*....|....*..
gi 1092592214 331 IVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDAL 367
Cdd:cd17876 168 AALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
76-368 |
5.86e-31 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 121.87 E-value: 5.86e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 76 LARSNNMLGKGLLALLSRDRIDQDVWD----EVEETLLLADLGSEPTTRLVEALQQRVRVE----GTSNPAAVKKMLREE 147
Cdd:TIGR01425 2 LAQLGSSLVTALRSMSSATVIDEEVINtmlkEICTALLESDVNPKLVRQMRNNIKKKINLEdiasGINKRKLIQDAVFEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 148 LVKIVRPDMDRELKTAGSdgnPGVVLVVGVNGVGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKT 227
Cdd:TIGR01425 82 LCNLVDPGVEAFTPKKGK---TCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 228 VRSEKEgADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKeapvTEVLLVIDATTGQNGMVQAK 307
Cdd:TIGR01425 159 YGSYEE-SDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKP----DSIIFVMDGSIGQAAFGQAK 233
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1092592214 308 VFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALL 368
Cdd:TIGR01425 234 AFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLL 294
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
47-368 |
3.71e-24 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 101.87 E-value: 3.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 47 EEPESSAPRAIE---LDMPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEpttrLVE 123
Cdd:COG1419 51 EDEAEKAPAAAAapaAASAAAEEEELEELRRELAELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPE----LAR 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 124 ALQQRVRveGTSNPAAVKKMLREELVKIVRPDMDRELKT-----------AGsdgnpgvvlvvgvngvgKTTTVGKIA-R 191
Cdd:COG1419 127 ELLEKLP--EDLSAEEAWRALLEALARRLPVAEDPLLDEggvialvgptgVG-----------------KTTTIAKLAaR 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 192 VMVADGQTLLLGAADTFRAAASEQLTTWGD--RVGVKTVRSEKEgadpasvaFDAVKAgKEQGVDTVLVDTAGRLQNKSG 269
Cdd:COG1419 188 FVLRGKKKVALITTDTYRIGAVEQLKTYARilGVPVEVAYDPEE--------LKEALE-RLRDKDLVLIDTAGRSPRDPE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 270 LMDQLgkiKRVIEKEAPVtEVLLVIDATTGQNGMVQ-AKVFGDIvDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGL 348
Cdd:COG1419 259 LIEEL---KALLDAGPPI-EVYLVLSATTKYEDLKEiVEAFSSL-GLDGLILTKLDETASLGSILNLLIRTGLPLSYITN 333
|
330 340
....*....|....*....|.
gi 1092592214 349 GEG-PDDLAPFDPEAFVDALL 368
Cdd:COG1419 334 GQRvPEDIEVADPERLARLLL 354
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
182-364 |
3.40e-21 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 89.92 E-value: 3.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIA-RVMVADGQTLLLGAADTFRAAASEQLTTWGDRVG--VKTVRSEKEGADpasvAFDAVKagkeqGVDTVLV 258
Cdd:cd17873 13 KTTTLAKLAaRYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGipVEVAEDPEDLAD----ALERLS-----DRDLILI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 259 DTAGRLQNKSGLMDQLgkiKRVIEKEAPVtEVLLVIDATTGQNGMVQ-AKVFGDIvDVTGIVLTKLDGTAKGGIVVAIQE 337
Cdd:cd17873 84 DTAGRSPRDKEQLEEL---KELLGAGEDI-EVHLVLSATTKAKDLKEiIERFSPL-GYRGLILTKLDETTSLGSVLSVLA 158
|
170 180
....*....|....*....|....*...
gi 1092592214 338 ELGVPVKLIGLG-EGPDDLAPFDPEAFV 364
Cdd:cd17873 159 ESQLPVSYVTTGqRVPEDIEVASPLRLA 186
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
23-369 |
1.17e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 80.71 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 23 RRPKKTADLQSLRQEAAKASGGSAEEPESSAPRAIELDMPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVwD 102
Cdd:PRK05703 86 SRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEF-A 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 103 EVEETLLLADLGSEpttrLVEALQQRVRVEGTSNPAAVKKMLREELVKIVRPDMDRELKT-----------AGsdgnpgv 171
Cdd:PRK05703 165 ELYKRLKRSGLSPE----IAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQggvvalvgptgVG------- 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 172 vlvvgvngvgKTTTVGKIA-RVMVADGQ------TLllgaaDTFRAAASEQLTTWGD--RVGVKTVRSEKEGAdpasvaf 242
Cdd:PRK05703 234 ----------KTTTLAKLAaRYALLYGKkkvaliTL-----DTYRIGAVEQLKTYAKimGIPVEVVYDPKELA------- 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 243 DAVKAGKEQgvDTVLVDTAGRLQNKSGLMDQLgkiKRVIEKEAPVTEVLLVIDATTgqngmvQAKVFGDIVD------VT 316
Cdd:PRK05703 292 KALEQLRDC--DVILIDTAGRSQRDKRLIEEL---KALIEFSGEPIDVYLVLSATT------KYEDLKDIYKhfsrlpLD 360
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1092592214 317 GIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLG-EGPDDLAPFDPEAFVDALLD 369
Cdd:PRK05703 361 GLIFTKLDETSSLGSILSLLIESGLPISYLTNGqRVPDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
83-152 |
1.96e-12 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 62.18 E-value: 1.96e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1092592214 83 LGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVE---GTSNPAAVKKMLREELVKIV 152
Cdd:smart00963 5 LGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEvlkGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
38-365 |
1.05e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 56.73 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 38 AAKASGGSAEEPESSAPRAIELDMPD--PSAGRLVRLRARLARSNNMLGKGLLALLSRDRiDQDVWDEVEETLLLADLGS 115
Cdd:PRK14723 59 APPAPAPLPAALVAPAPAAASIAAPAavPAPGAIGDLRGELQSMRGMLERQLAGLLWAAG-EVAGRDPLRASLFRWLLGA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 116 EPTTRLVEALQQRVRVeGTSNPAAVKkMLREELVKIVrPDMDRE--LKTAGSdgnpgVVLVVGVNGVGKTTTVGKIAR-- 191
Cdd:PRK14723 138 GFSGQLARALLERLPV-GYDRPAAMA-WIRNELATHL-PVLRDEdaLLAQGG-----VLALVGPTGVGKTTTTAKLAArc 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 192 VMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADpasvAFDAVKAGKEQGVdtVLVDTAGRLQNKSGLM 271
Cdd:PRK14723 210 VAREGADQLALLTTDSFRIGALEQLRIYGRILGVP-VHAVKDAAD----LRFALAALGDKHL--VLIDTVGMSQRDRNVS 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 272 DQLGKIKRViekEAPVTEVLLVIDATTGQ--NGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIV--VAIQEELgvPVKLIG 347
Cdd:PRK14723 283 EQIAMLCGV---GRPVRRLLLLNAASHGDtlNEVVHAYRHGAGEDVDGCIITKLDEATHLGPAldTVIRHRL--PVHYVS 357
|
330
....*....|....*....
gi 1092592214 348 LGEG-PDDLAPFDPEAFVD 365
Cdd:PRK14723 358 TGQKvPEHLELAQADELVD 376
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
83-148 |
1.08e-08 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 51.31 E-value: 1.08e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1092592214 83 LGKGLLALLS----RDRIDQDVWDE----VEETLLLADLGSEPTTRLVEALQQR-VRVEGTSNPAAVKKMLREEL 148
Cdd:pfam02881 1 LGEKLSSLFKglrgKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKaVGEKKLKPPQEVKKILKEEL 75
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
182-262 |
1.81e-08 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 55.03 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIA-R-VMVADGQTLLLGAADTFRAAASEQLTTWGD--RVGVKTVRSEKEgadpasvaFDAVKAgKEQGVDTVL 257
Cdd:TIGR03499 207 KTTTLAKLAaRfALEHGKKKVALITTDTYRIGAVEQLKTYAEilGIPVKVARDPKE--------LREALD-RLRDKDLIL 277
|
....*
gi 1092592214 258 VDTAG 262
Cdd:TIGR03499 278 IDTAG 282
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
143-350 |
6.51e-07 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 50.13 E-value: 6.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 143 MLREELVKIVRPDMDRELKTAGS-DGNPGVVLVVGVNGVGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGD 221
Cdd:PRK06731 48 MITEEVIEYILEDMSSHFNTENVfEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 222 RVGVKTVRSEKEGADPASVAFdavkAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEApvteVLLVIDATTGQN 301
Cdd:PRK06731 128 TIGFEVIAVRDEAAMTRALTY----FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDY----ICLTLSASMKSK 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1092592214 302 GMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGE 350
Cdd:PRK06731 200 DMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
182-350 |
1.40e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 50.06 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPASVAFdavkAGKEQGVDTVLVDTA 261
Cdd:PRK11889 254 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY----FKEEARVDYILIDTA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 262 GRLQNKSGLMDQLGKIKRVIEKEApvteVLLVIDATTGQNGMVQAKV-FGDIvDVTGIVLTKLDGTAKGGIVVAIQEELG 340
Cdd:PRK11889 330 GKNYRASETVEEMIETMGQVEPDY----ICLTLSASMKSKDMIEIITnFKDI-HIDGIVFTKFDETASSGELLKIPAVSS 404
|
170
....*....|
gi 1092592214 341 VPVKLIGLGE 350
Cdd:PRK11889 405 APIVLMTDGQ 414
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
182-355 |
3.21e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 48.56 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIAR--VMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKtVRSEKEGADPasvafdAVKAGKEQGVDTVLVD 259
Cdd:PRK14722 150 KTTTTAKLAArcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP-VHAVKDGGDL------QLALAELRNKHMVLID 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 260 TAGRLQNKSGLMDQLGKIKRViekEAPVTEVLLVIDATTGQ--NGMVQA------KVFGDIVDVTGIVLTKLDGTAKGGI 331
Cdd:PRK14722 223 TIGMSQRDRTVSDQIAMLHGA---DTPVQRLLLLNATSHGDtlNEVVQAyrsaagQPKAALPDLAGCILTKLDEASNLGG 299
|
170 180
....*....|....*....|....*
gi 1092592214 332 VVAIQEELGVPVKLIGLGEG-PDDL 355
Cdd:PRK14722 300 VLDTVIRYKLPVHYVSTGQKvPENL 324
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
182-324 |
9.35e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 47.27 E-value: 9.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKI-ARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVG-----VKTVRSEKEgadpaSVAFDavkagkeqGVDT 255
Cdd:PRK12724 236 KTTSIAKLaAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGmpfypVKDIKKFKE-----TLARD--------GSEL 302
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 256 VLVDTAGRLQNKSGLMDQLGKIKRVI-EKEApvTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLD 324
Cdd:PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFgEKDS--VENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
182-367 |
1.40e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 46.82 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVADGQ----TLLLGAADTFRAAASEQLTTWGDRVG--VKTVRSEKEGADPASVAFDavkagkeqgVDT 255
Cdd:PRK12723 187 KTTTIAKLAAIYGINSDdkslNIKIITIDNYRIGAKKQIQTYGDIMGipVKAIESFKDLKEEITQSKD---------FDL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 256 VLVDTAGRlqNKSGLMdQLGKIKRVIEKEAPVTEVLLVIDATTGQNG----MVQAKVFGdivdVTGIVLTKLDGTAKGGI 331
Cdd:PRK12723 258 VLVDTIGK--SPKDFM-KLAEMKELLNACGRDAEFHLAVSSTTKTSDvkeiFHQFSPFS----YKTVIFTKLDETTCVGN 330
|
170 180 190
....*....|....*....|....*....|....*..
gi 1092592214 332 VVAIQEELGVPVKLIGLGEG-PDDLAPFDPEAFVDAL 367
Cdd:PRK12723 331 LISLIYEMRKEVSYVTDGQIvPHNISIAEPLTFIKKI 367
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
182-355 |
1.93e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 46.52 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 182 KTTTVGKIARVMVAD--GQTLLLGAADTFRAAASEQLTTWGDRVGVKTvrsekEGADPASVAFDAVKAGKEQGVdtVLVD 259
Cdd:PRK12727 363 KTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAV-----HEADSAESLLDLLERLRDYKL--VLID 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 260 TAGRLQNKSGLMDQLGKIkrvieKEAPVTEVLLVIDATTGqngmvqakvFGDIVDVT---------GIVLTKLDGTAKGG 330
Cdd:PRK12727 436 TAGMGQRDRALAAQLNWL-----RAARQVTSLLVLPANAH---------FSDLDEVVrrfahakpqGVVLTKLDETGRFG 501
|
170 180
....*....|....*....|....*.
gi 1092592214 331 IVVAIQEELGVPVKLIGLGEG-PDDL 355
Cdd:PRK12727 502 SALSVVVDHQMPITWVTDGQRvPDDL 527
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
181-343 |
4.94e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 45.11 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 181 GKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSekegADPASVAFDAVKAGKEQGVDTVLVDT 260
Cdd:PRK12726 218 GKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA----TSPAELEEAVQYMTYVNCVDHILIDT 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 261 AGRLQNKSGLMDQLGKIKRVIEKEapvtevllvIDATTGQNGMVQAKVFGDI-----VDVTGIVLTKLDGTAKGGIVVAI 335
Cdd:PRK12726 294 VGRNYLAEESVSEISAYTDVVHPD---------LTCFTFSSGMKSADVMTILpklaeIPIDGFIITKMDETTRIGDLYTV 364
|
....*...
gi 1092592214 336 QEELGVPV 343
Cdd:PRK12726 365 MQETNLPV 372
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
181-339 |
6.59e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 44.56 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 181 GKTTTVGKIAR--VMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVkTVRSEKEGADpASVAFDAVKagkeqGVDTVLV 258
Cdd:PRK14721 203 GKTTTTAKLAAraVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGV-SVRSIKDIAD-LQLMLHELR-----GKHMVLI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092592214 259 DTAGRLQNKSGLMDQLGKIKRVIEKeapvTEVLLVIDATTGQNGM--VQAKVFGDivDVTGIVLTKLDGTAKGGIV--VA 334
Cdd:PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCGTQ----VKHLLLLNATSSGDTLdeVISAYQGH--GIHGCIITKVDEAASLGIAldAV 349
|
....*
gi 1092592214 335 IQEEL 339
Cdd:PRK14721 350 IRRKL 354
|
|
| AdSS |
cd03108 |
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in ... |
303-354 |
4.42e-04 |
|
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Pssm-ID: 349762 Cd Length: 316 Bit Score: 41.72 E-value: 4.42e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1092592214 303 MVQAKVFGDIVDVTGIVLTKLDGTAKGgIVVAIQEELGVPVKLIGLGEGPDD 354
Cdd:cd03108 263 LVALRYAVRINGLTELALTKLDVNAQK-YIERIEELLGVPITYISVGPDREQ 313
|
|
| |
