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Conserved domains on  [gi|1090882698|gb|AOY34872|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Circus cyaneus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 593.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   3 QLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTP 82
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  83 MLALLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVL 162
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 163 LSGNYTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 243 TLTTILFLNPSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVP 322
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 1090882698 323 PCL 325
Cdd:MTH00111  321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 593.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   3 QLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTP 82
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  83 MLALLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVL 162
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 163 LSGNYTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 243 TLTTILFLNPSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVP 322
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 1090882698 323 PCL 325
Cdd:MTH00111  321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
14-310 2.25e-109

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 320.19  E-value: 2.25e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  14 LSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  94 --IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNM 171
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 172 LTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1090882698 252 PSPLSLSPQLFTMFLAtKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLW 310
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 18-305 4.06e-100

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 297.81  E-value: 4.06e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:COG1005    20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  98 L--PFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGnyTLNMLTVT 175
Cdd:COG1005   100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG--SLNLSEIV 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 176 ---QEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL-- 250
Cdd:COG1005   178 eaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLgg 257

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 251 -----NPSPLSLSPQLFTMFLatKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:COG1005   258 wlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 593.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   3 QLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTP 82
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  83 MLALLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVL 162
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 163 LSGNYTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 243 TLTTILFLNPSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVP 322
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 1090882698 323 PCL 325
Cdd:MTH00111  321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 7-323 7.05e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 497.21  E-value: 7.05e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLAL 86
Cdd:MTH00134    6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  87 LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGN 166
Cdd:MTH00134   86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 167 YTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00134  166 FTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1090882698 247 ILFLNPSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00134  246 ILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 14-323 4.21e-178

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 495.30  E-value: 4.21e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  14 LSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIW 93
Cdd:MTH00104    7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  94 IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNMLT 173
Cdd:MTH00104   87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 174 VTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPS 253
Cdd:MTH00104  167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 254 PLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00104  247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 7-323 1.07e-177

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 494.14  E-value: 1.07e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLAL 86
Cdd:MTH00071    5 ISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMAL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  87 LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGN 166
Cdd:MTH00071   85 TLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 167 YTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00071  165 FSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLST 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1090882698 247 ILFLNPSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00071  245 ILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-323 1.55e-144

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 409.69  E-value: 1.55e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   6 TLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLA 85
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  86 LLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSG 165
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 166 NYTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1090882698 246 TILFLNPSPLslspqlfTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00218  241 VILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 7-323 1.28e-139

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 397.81  E-value: 1.28e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLAL 86
Cdd:MTH00040    4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  87 LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGN 166
Cdd:MTH00040   84 FLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 167 YTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00040  164 FSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSV 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1090882698 247 ILFLN-PSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00040  244 ILFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 13-320 1.10e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 331.32  E-value: 1.10e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  13 TLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTI 92
Cdd:MTH00195    8 FLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALIL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  93 WIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNML 172
Cdd:MTH00195   88 WVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIM 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 173 TVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNP 252
Cdd:MTH00195  168 VISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGG 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1090882698 253 SPlslspqlfTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAG 320
Cdd:MTH00195  248 GG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 20-307 2.64e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 325.29  E-value: 2.64e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  20 ILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLPLP 99
Cdd:MTH00143   14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 100 FSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNMLTVTQEPL 179
Cdd:MTH00143   94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 180 YLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLnpSPLSLSP 259
Cdd:MTH00143  174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFF--GGSSVLF 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1090882698 260 QLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSL 307
Cdd:MTH00143  252 LLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 18-316 2.48e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 322.87  E-value: 2.48e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:MTH00193   13 ICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  98 LPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNMLTVTQE 177
Cdd:MTH00193   93 YLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 178 PLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPSPLSl 257
Cdd:MTH00193  173 YIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLS- 251

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1090882698 258 spqlftMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPI 316
Cdd:MTH00193  252 ------LLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NADHdh pfam00146
NADH dehydrogenase;
14-310 2.25e-109

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 320.19  E-value: 2.25e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  14 LSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  94 --IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNM 171
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 172 LTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1090882698 252 PSPLSLSPQLFTMFLAtKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLW 310
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 18-313 1.97e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 305.42  E-value: 1.97e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:MTH00225   12 ICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYP 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  98 LPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNMLTVTQE 177
Cdd:MTH00225   92 SMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQK 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 178 PLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPSPLSL 257
Cdd:MTH00225  172 YFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFVTI 251

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1090882698 258 SpqlftMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHIS 313
Cdd:MTH00225  252 D-----LFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-323 8.85e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 301.65  E-value: 8.85e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  13 TLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTI 92
Cdd:MTH00054    8 ILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  93 W--IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLN 170
Cdd:MTH00054   88 WgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLT 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 171 MLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL 250
Cdd:MTH00054  168 EIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFL 247

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1090882698 251 N---PSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00054  248 GgwlVISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 6-323 8.57e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 299.34  E-value: 8.57e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   6 TLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLA 85
Cdd:MTH00216    5 IIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  86 LLLALTIWIPLPLP--FSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLL 163
Cdd:MTH00216   85 FTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLC 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 164 SGNYTLNMLTVTQEP-LYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00216  165 VGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMS 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 243 TLTTILFLNpSPLSLSPQLF--TMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAG 320
Cdd:MTH00216  245 CLTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNG 323


                  ...
gi 1090882698 321 VPP 323
Cdd:MTH00216  324 PPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 18-305 4.06e-100

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 297.81  E-value: 4.06e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:COG1005    20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  98 L--PFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGnyTLNMLTVT 175
Cdd:COG1005   100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG--SLNLSEIV 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 176 ---QEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL-- 250
Cdd:COG1005   178 eaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLgg 257

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 251 -----NPSPLSLSPQLFTMFLatKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:COG1005   258 wlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-305 4.56e-96

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 287.09  E-value: 4.56e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:PRK06076   21 VVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIP 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  98 L--PFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGnyTLNMLTV- 174
Cdd:PRK06076  101 FgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG--SLNLSDIv 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 175 -TQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN-- 251
Cdd:PRK06076  179 eAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgw 258

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1090882698 252 --PSPLSLSPQLFTMFLAtKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:PRK06076  259 lpPFPLGGGIPGAIWFVL-KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 2.46e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 260.72  E-value: 2.46e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   1 MTQLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTM 80
Cdd:MTH00029    1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  81 TPMLALLLALTIW--IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:MTH00029   81 APIISFTLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 159 SMVLLSGNYTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029  161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 239 MLMNTLTTILFLNP--SPLSLSPQLFTMFLATKILLLSSG--------------FLWVRASYPRFRYDQLMHLLWKSFLP 302
Cdd:MTH00029  241 ILMSCMMTIFFLGGwlSPLDGIPTPPEAFSIFEQIASSKSsfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLP 320

                         330       340
                  ....*....|....*....|.
gi 1090882698 303 LTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00029  321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 9-316 1.21e-81

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 250.08  E-value: 1.21e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   9 YLAMTLSYaIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLL 88
Cdd:MTH00010    6 FISILLSY-VMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  89 ALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYT 168
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 169 LNMLTVTQeplylifSSWPLMMM------WYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00010  165 FSKIIMSQ-------YSWILLMIipltvsWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMS 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1090882698 243 TLTTILFLNPSPlslSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLwhISMPI 316
Cdd:MTH00010  238 LFTSVFFTSFIP---SIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-305 1.24e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 195.12  E-value: 1.24e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  12 MTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALT 91
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  92 IWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNM 171
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 172 ltvtqeplYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:MTH00090  161 --------SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1090882698 252 psplslspqlFTMFLatkILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:MTH00090  233 ----------FSFLM---LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 10-305 4.47e-50

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 170.13  E-value: 4.47e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  10 LAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLA---L 86
Cdd:CHL00032   30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisI 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  87 LLALTIwIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGn 166
Cdd:CHL00032  110 LLSYLV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN- 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 167 yTLNMLTVTQEPLYLIFSSWPL------MMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIML 240
Cdd:CHL00032  188 -SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLV 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 241 MNTLTTILFLNPSPLSL-------------SPQLFTMFLATKILLLSSG-FLWV----RASYPRFRYDQLMHLLWKSFLP 302
Cdd:CHL00032  267 SSLFVTVLYLGGWNLSIpyifipelfeinkTGGVFGTTIGIFITLAKTYlFLFIsittRWTLPRLRMDQLLNLGWKFLLP 346


                  ...
gi 1090882698 303 LTL 305
Cdd:CHL00032  347 ISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 20-305 1.12e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 159.32  E-value: 1.12e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  20 ILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLPLP 99
Cdd:MTH00058   14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 100 FSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMVLLSGNYTLNMLTVTQEPL 179
Cdd:MTH00058   94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 180 YLIFssWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPSplslsp 259
Cdd:MTH00058  174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG------ 245

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1090882698 260 qlFTMFLATKILLLssgFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:MTH00058  246 --FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-310 3.45e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 116.05  E-value: 3.45e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPnivgpfGLLQPVADGVKLFIKEPIRPSTSSPLlFTMTPMLAL 86
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698  87 -----LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAvysILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSMV 161
Cdd:COG0650    74 aamllAALLVPVLTTGPPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1090882698 162 LLSGN---YTLNMLTVTQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGEYELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:COG0650   151 LLAGStslSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1090882698 239 MLMNTLTTILFLnPSPLSLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLW 310
Cdd:COG0650   231 FVLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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