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Conserved domains on  [gi|1089667453|dbj|BAV82671|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Cylicostephanus goldi]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475895)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 14-409 1.71e-130

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 381.18  E-value: 1.71e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  14 KPIYFFLFIVMFSFVLFKNIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLML 93
Cdd:MTH00094    8 SPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLML 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  94 YMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFIYYKSMFMFTTCYFDFNISWELFFILSLSFMMKFPV 173
Cdd:MTH00094   88 YMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 174 YFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVT 253
Cdd:MTH00094  168 YFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 254 HMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPS 333
Cdd:MTH00094  248 HMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPS 327

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1089667453 334 LSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIVCCMMGKNYININNFNIGVALSTVVMMFNVFWLSLFF 409
Cdd:MTH00094  328 LSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
 
Name Accession Description Interval E-value
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 14-409 1.71e-130

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 381.18  E-value: 1.71e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  14 KPIYFFLFIVMFSFVLFKNIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLML 93
Cdd:MTH00094    8 SPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLML 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  94 YMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFIYYKSMFMFTTCYFDFNISWELFFILSLSFMMKFPV 173
Cdd:MTH00094   88 YMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 174 YFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVT 253
Cdd:MTH00094  168 YFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 254 HMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPS 333
Cdd:MTH00094  248 HMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPS 327

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1089667453 334 LSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIVCCMMGKNYININNFNIGVALSTVVMMFNVFWLSLFF 409
Cdd:MTH00094  328 LSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 87-359 2.05e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 2.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  87 SSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLF-----------IYYKSMFMFTTCYFDFNI 155
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgtLSFDELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 156 SWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYN---NFWVIIALLGMIL 232
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPfiqQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 233 ASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEF-YHTTSTRMVYFLNSFFT 311
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSViYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1089667453 312 SSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFV 359
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 68-344 1.69e-23

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 102.08  E-value: 1.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  68 FNLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQiEKINSGYYLLFYAAICSFPFL-------FIYY 140
Cdd:COG1008   115 ALLLLLEAGMIGV----FLALDLFLFYVFWELMLIPMYFLIGIWGGE-RRIYAAIKFFLYTLAGSLLMLvailalyFLAG 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 141 KSMFMFTTCY---FDFNISWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRIL------ 211
Cdd:COG1008   190 ALTFDIAELAaapLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFAlplfpe 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 212 GSMNFVYnnFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSG-LMMMLAHGYTSTLMFYL 290
Cdd:COG1008   270 ASAYFAP--LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLG-IFALNPLGLQGaVLQMVSHGLITAALFLL 346

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1089667453 291 IGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIV 344
Cdd:COG1008   347 VGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLL 400
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 68-379 2.18e-22

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 98.86  E-value: 2.18e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  68 FNLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQiEKINSGYYLLFYAAICSF----PFLFIYYKSM 143
Cdd:TIGR01972 110 ALLLLLEAGVIGV----FLALDLFLFYVFWEAMLIPMYLLIGVWGGP-NRIYAAMKFFLYTLAGSLlmllAILGLYFLGG 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 144 FMF---TTCYFDFNISWE--LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSM---- 214
Cdd:TIGR01972 185 GTFdllELLNLPLPFGVQtwLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLfpda 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 215 NFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSG-LMMMLAHGYTSTLMFYLIGE 293
Cdd:TIGR01972 265 SLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG-IFSFNELGISGaVFQMISHGLITAALFLLVGV 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 294 FYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIV 373
Cdd:TIGR01972 344 LYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYK 423


                  ....*.
gi 1089667453 374 CCMMGK 379
Cdd:TIGR01972 424 RVFFGE 429
 
Name Accession Description Interval E-value
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 14-409 1.71e-130

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 381.18  E-value: 1.71e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  14 KPIYFFLFIVMFSFVLFKNIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLML 93
Cdd:MTH00094    8 SPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLML 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  94 YMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFIYYKSMFMFTTCYFDFNISWELFFILSLSFMMKFPV 173
Cdd:MTH00094   88 YMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 174 YFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVT 253
Cdd:MTH00094  168 YFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 254 HMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPS 333
Cdd:MTH00094  248 HMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPS 327

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1089667453 334 LSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIVCCMMGKNYININNFNIGVALSTVVMMFNVFWLSLFF 409
Cdd:MTH00094  328 LSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 16-409 1.91e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 151.85  E-value: 1.91e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  16 IYFFLFIVMFSFVLFKNIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNL-------LMLSAVLIMICLFFFISS 88
Cdd:MTH00163   28 LFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKnnysnlfLFLILFLLIFLLLTFSSM 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  89 NMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFI-----YYKSMFMFTTCYFDFNISWELFFIL 163
Cdd:MTH00163  108 NLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGifylyNNSGSLSFFLLNFFGSLNFLWYLSM 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 164 SLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSM---NFVYNNFWVIIALLGMILASFSCVFQ 240
Cdd:MTH00163  188 ILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFsklGLKFNYIWISISLVGGVIVSLICLRQ 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 241 SDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIF 320
Cdd:MTH00163  268 VDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWW 347

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 321 SLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIVCCMMGKNYININNFNIGVALSTVVMMF 400
Cdd:MTH00163  348 FLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFL 427


                  ....*....
gi 1089667453 401 NVFWLSLFF 409
Cdd:MTH00163  428 HWLPLNLLI 436
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-379 1.25e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 146.14  E-value: 1.25e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  47 FVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLF 126
Cdd:MTH00150   34 LWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLLILGWGYQPERLQAGMYMML 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 127 YAAICSFPFLFI------YYKSMFMFTTCY--FDFNISWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGL 198
Cdd:MTH00150  114 YTVGASLPLLLVilwmssSYGSSFMLLISSlrKLLSSMGLWGLLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGI 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 199 LLKLGTAGYLRILGSMNFVYNNF---WVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLM 275
Cdd:MTH00150  194 LLKLGGYGILRMMMVFSLSSSSFsifLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALI 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 276 MMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFF 355
Cdd:MTH00150  274 MMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFV 353

                         330       340
                  ....*....|....*....|....
gi 1089667453 356 MIFVYFLISFYYSLFLIVCCMMGK 379
Cdd:MTH00150  354 PLGLMVFLSGLYSLYLYTSIQHGG 377
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 68-344 2.67e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 138.02  E-value: 2.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  68 FNLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFL----FIYYK-- 141
Cdd:MTH00124   97 TTLILLQTFLILA----FSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLiailYLHNQtg 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 142 --SMFMFTTCYFDFNISWE---LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNF 216
Cdd:MTH00124  173 tlSLPMLQLTHPTLTNSWTnllLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPP 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 217 VYNNF---WVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSfLLLTMIYIMMSSKVSGLM-MMLAHGYTSTLMFYLIG 292
Cdd:MTH00124  253 LSNTLhypFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMG-LVIAATMIQTPWSLSGAMiLMIAHGLTSSMLFCLAN 331

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1089667453 293 EFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIV 344
Cdd:MTH00124  332 TNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 24-409 3.00e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 137.76  E-value: 3.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  24 MFSFVLFKNIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLMLYMYFELSMFP 103
Cdd:MTH00206   48 WSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIP 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 104 ILIMILGFGSQIEKINSGYYLLFYAAICSFPFL--------FIYYKSMFMFTTCYFDFNISWELFFILSLSFMMKFPVYF 175
Cdd:MTH00206  128 TLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLiallflqnSLGSLSLYILYFSKLTTWNNNLWWLACILAFLVKLPLYG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 176 LHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNN---FWVIIALLGMILASFSCVFQSDAKSLAAYSSV 252
Cdd:MTH00206  208 VHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLssyFFIILGLWGSIMTSSICLRQTDLKSLIAYSSV 287

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 253 THMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPP 332
Cdd:MTH00206  288 SHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPP 367

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1089667453 333 SLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIVCCMMGKNYININNFNIGVALSTVVMMFNVFWLSLFF 409
Cdd:MTH00206  368 FPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLI 444
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 68-370 7.05e-33

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 128.50  E-value: 7.05e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  68 FNLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFP----FLFIYYK-- 141
Cdd:MTH00068   97 SMLIILQLTLILA----FSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPlliaLLILQNSlg 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 142 --SMFMFTTCYFDFNISWE---LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRI---LGS 213
Cdd:MTH00068  173 slSLILLELMSPMQLMTYTnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRIsilLTP 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 214 MNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGE 293
Cdd:MTH00068  253 LSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANT 332

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1089667453 294 FYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLF 370
Cdd:MTH00068  333 NYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLY 409
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 53-371 1.56e-32

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 127.55  E-value: 1.56e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  53 MMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICS 132
Cdd:MTH00014   75 MILASFKIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTAS 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 133 FP------FLFIYYKSMFMFTTCY-----FDFNISWelfFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLK 201
Cdd:MTH00014  155 LPllmsilLIFYTNNSLSMLMSSMeppsiYLMNLWW---LITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLK 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 202 LGTAGYLR---ILGSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMML 278
Cdd:MTH00014  232 LGGYGLLRmssLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMI 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 279 AHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIF 358
Cdd:MTH00014  312 AHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLA 391

                         330
                  ....*....|...
gi 1089667453 359 VYFLISFYYSLFL 371
Cdd:MTH00014  392 ITSFLAAAYSLFL 404
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 70-379 3.48e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 126.55  E-value: 3.48e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  70 LLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFL--FIYYKS----- 142
Cdd:MTH00110   99 LILLQLFLIMT----FTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLvaLLYIQNnlgsl 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 143 -MFMFTTCYFDFNISWE---LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVY 218
Cdd:MTH00110  175 nFLLLQLWAQPLPNSWSnnlLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILNPLT 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 219 NNF---WVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSfllLTMIYIMMSSKVS---GLMMMLAHGYTSTLMFYLIG 292
Cdd:MTH00110  255 EFMaypFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA---LVIVAILIQTPWSfmgATALMIAHGLTSSMLFCLAN 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 293 EFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLI 372
Cdd:MTH00110  332 SNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYML 411


                  ....*..
gi 1089667453 373 VCCMMGK 379
Cdd:MTH00110  412 ITTQRGK 418
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 16-371 1.66e-29

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 118.93  E-value: 1.66e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  16 IYFFLFIVMFSFVLFKNIAWSGVFFVVDSNVFVLL----IFMMIFIYGVVLISEKNFNLLMLS-AVLIMICLFFFISSNM 90
Cdd:MTH00205   31 GLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLsfwiSLLMVLASYKVFKSNKNSKLFTVSvIMLLLILILSFSVDNL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  91 LMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFIYYK--------SMFMFTTCYFDFNISWELFFI 162
Cdd:MTH00205  111 LLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFlnslnfslSMFFNFPLNFSDFYLFLYWIF 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 163 LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFV---YNNFWVIIALLGMILASFSCVF 239
Cdd:MTH00205  191 LMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLnsnFSELFFSISLWGGVMTGMICLR 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 240 QSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGII 319
Cdd:MTH00205  271 QVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLM 350

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1089667453 320 FSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFL 371
Cdd:MTH00205  351 WFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYL 402
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 69-369 2.40e-29

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 118.54  E-value: 2.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  69 NLLMLSAVLIMICLFFFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLF-IYYKSMFMFT 147
Cdd:MTH00044   95 TFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLIsLIAIYSSSSS 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 148 TCYFDFNISWELFFILSLS----------FMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFV 217
Cdd:MTH00044  175 LSIPLSELNWLTSLSSNSSsiwwifcilaFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFSLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 218 YNNF----WVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGE 293
Cdd:MTH00044  255 SANNisfiLIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANI 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1089667453 294 FYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSL 369
Cdd:MTH00044  335 LYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSL 410
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 71-373 6.77e-29

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 117.36  E-value: 6.77e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  71 LMLSAVLIMICLFFFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFL------FIYYKSMF 144
Cdd:MTH00127   97 ITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLvallllQNSTGTLS 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 145 MFTTCYFDFN--ISWELFFILS---LSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYN 219
Cdd:MTH00127  177 MLTLQYSQPLqlSSWADKLWWAgclLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTK 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 220 NF---WVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSfLLLTMIYIMMSSKVSG-LMMMLAHGYTSTLMFYLIGEFY 295
Cdd:MTH00127  257 ELsypFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMG-LVAGGILIQTPWGFTGaLILMIAHGLTSSALFCLANTNY 335

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1089667453 296 HTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIV 373
Cdd:MTH00127  336 ERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFL 413
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 19-371 6.29e-25

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 106.30  E-value: 6.29e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  19 FLFIVMFSFVLFK--NIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISE-------KNFNLLMLSAVLIMICLFffISSN 89
Cdd:MTH00204   56 FQFINLIEWIISPtlNFQWGPLVFAVDGVSLFFILLTTLLIPICILISWksikflfKEFLLCLLFLEVLLIGVF--SVLD 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  90 MLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFIYYK--------SMFMFTTCYFDFNISWELFF 161
Cdd:MTH00204  134 LLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQlysitgttDYQILLNIKLPLSIQKWLLV 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 162 ILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLR----ILGSMNFVYNNFWVIIALLGMILASFSC 237
Cdd:MTH00204  214 GFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRfswpLFPAASEYFAPLIVMLSVIAVIYGSLTT 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 238 VFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFG 317
Cdd:MTH00204  294 CRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFV 373

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1089667453 318 IIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFL 371
Cdd:MTH00204  374 IIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 87-359 2.05e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 2.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  87 SSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLF-----------IYYKSMFMFTTCYFDFNI 155
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgtLSFDELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 156 SWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYN---NFWVIIALLGMIL 232
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPfiqQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 233 ASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEF-YHTTSTRMVYFLNSFFT 311
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSViYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1089667453 312 SSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFV 359
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 68-344 1.69e-23

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 102.08  E-value: 1.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  68 FNLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQiEKINSGYYLLFYAAICSFPFL-------FIYY 140
Cdd:COG1008   115 ALLLLLEAGMIGV----FLALDLFLFYVFWELMLIPMYFLIGIWGGE-RRIYAAIKFFLYTLAGSLLMLvailalyFLAG 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 141 KSMFMFTTCY---FDFNISWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRIL------ 211
Cdd:COG1008   190 ALTFDIAELAaapLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFAlplfpe 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 212 GSMNFVYnnFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSG-LMMMLAHGYTSTLMFYL 290
Cdd:COG1008   270 ASAYFAP--LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLG-IFALNPLGLQGaVLQMVSHGLITAALFLL 346

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1089667453 291 IGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIV 344
Cdd:COG1008   347 VGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLL 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 69-372 4.92e-23

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 100.66  E-value: 4.92e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  69 NLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQiEKINSGYYLLFYAAICSFPFL--FIYYKSMFMF 146
Cdd:PRK05846  116 ALLWLEGGVIGV----FAALDLLLFYVFFEAMLIPMYFLIGVWGGK-NRIYAATKFFLYTLLGSLLMLvaIIYLVVVYYN 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 147 TTCYFDF----------NISWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRIL----- 211
Cdd:PRK05846  191 ATGTFDIadllnlplppGVQYWLFLAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSlplfp 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 212 -GSMNFVYnnFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSGLM-MMLAHGYTSTLMFY 289
Cdd:PRK05846  271 dASHEFAP--IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLG-IFAGNQLGIQGAIfQMISHGLSSAALFL 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 290 LIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSL 369
Cdd:PRK05846  348 LVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSL 427


                  ...
gi 1089667453 370 FLI 372
Cdd:PRK05846  428 WLY 430
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 40-371 6.10e-23

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 100.38  E-value: 6.10e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  40 FVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISS-----NMLMLYMYFELSMFPILIMILGFGSQ 114
Cdd:MTH00226   98 FAVDGISIYFIILTGFIVPCSILISWHSVKYLTKSFLICMLILEFLLYAvfsvlDIFMFYILFEGVLIPMYLILGIWGSR 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 115 IEKINSGYYLLFYAAICSFPFLFIYYKSMFMF-TTCYFDF---------NISWELFFILSLSFMMKFPVYFLHLWLPKAH 184
Cdd:MTH00226  178 EEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHgTTDYLTLascshvvseQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAH 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 185 VEAPTTASMLLAGLLLKLGTAGYLRI------LGSMNFVynNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFL 258
Cdd:MTH00226  258 VEAPVAGSVLLAGILLKLGGYGLVRLswpilpLGAQNLA--PAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLV 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 259 LLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLS 338
Cdd:MTH00226  336 SITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIG 415

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1089667453 339 EFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFL 371
Cdd:MTH00226  416 EYLSILSSFNWNPIIGVFVCSGVILSAVYSFYF 448
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 19-371 1.95e-22

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 98.97  E-value: 1.95e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  19 FLFIVMFSFVLFKNIAWSGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSavlIMICLFF--------FISSNM 90
Cdd:MTH00217   55 FQAIKKFEWIPGIEPVFGPVVFAVDGISIFFLILTALLTPICILISWNSIKFLIKE---FLLCLLVieillmgvFTILDL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  91 LMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICS-FPFLFIYYKSMFMFTTCY-------FDFNISWELFFI 162
Cdd:MTH00217  132 VGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSvFMLLGIFTLYSYAGTTDYqalcclkIEKELQYFIFLG 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 163 LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLR----ILGSMNFVYNNFWVIIALLGMILASFSCV 238
Cdd:MTH00217  212 FFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRfswpLLPEASEYFSPLIQTLSLLAIIYGSLTTC 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 239 FQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGI 318
Cdd:MTH00217  292 RQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGI 371

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1089667453 319 IFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFL 371
Cdd:MTH00217  372 LMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 68-379 2.18e-22

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 98.86  E-value: 2.18e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  68 FNLLMLSAVLIMIclffFISSNMLMLYMYFELSMFPILIMILGFGSQiEKINSGYYLLFYAAICSF----PFLFIYYKSM 143
Cdd:TIGR01972 110 ALLLLLEAGVIGV----FLALDLFLFYVFWEAMLIPMYLLIGVWGGP-NRIYAAMKFFLYTLAGSLlmllAILGLYFLGG 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 144 FMF---TTCYFDFNISWE--LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSM---- 214
Cdd:TIGR01972 185 GTFdllELLNLPLPFGVQtwLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLfpda 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 215 NFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSG-LMMMLAHGYTSTLMFYLIGE 293
Cdd:TIGR01972 265 SLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG-IFSFNELGISGaVFQMISHGLITAALFLLVGV 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 294 FYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIV 373
Cdd:TIGR01972 344 LYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYK 423


                  ....*.
gi 1089667453 374 CCMMGK 379
Cdd:TIGR01972 424 RVFFGE 429
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
85-342 2.08e-16

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 80.90  E-value: 2.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  85 FISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLfYAAICSFPFLFIYYKSMFMFTTCYFDFN--------IS 156
Cdd:PRK06473  124 FLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLL-YTAISGILILVSFLGLVWLSGASSFDYEplrshtlpLS 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 157 WELFFILSL--SFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRIlgSMNFvYNNFWVIIALLGMILAS 234
Cdd:PRK06473  203 TQLLLLAPIlvGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRF--GVGL-FPEAWVYLAPWLATWAV 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 235 FSCVF-------QSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLN 307
Cdd:PRK06473  280 VSVLYgascaiaQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLR 359

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1089667453 308 SFFTSSIFFGIIFSLVFL---SNSGVPPSLSFLSEFMI 342
Cdd:PRK06473  360 GLLNPERGLPITGSLMILgvmASAGIPGMVGFIAEFLV 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
85-346 1.74e-12

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 68.59  E-value: 1.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  85 FISSNMLMLYMYFELSMFPILIMILGFGSQiEKINSGYYLLFYAAICSFPFLFIYYKSMFMFTTCYFDFN-ISWE----- 158
Cdd:PRK07363  124 LLAQNLLLFFLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDaISTQnlsln 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 159 ----LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRI-LGSMNFVYNNFWVIIALLGMILA 233
Cdd:PRK07363  203 tqliLLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFgLQLFPQTWSLVAPGLAIIGTISV 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 234 ---SFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFF 310
Cdd:PRK07363  283 iygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLM 362

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1089667453 311 TSSIFFGIIFSLVFLS---NSGVPPSLSFLSEFMIIVNS 346
Cdd:PRK07363  363 NPIRGLPLTSALLVLAgmaSAGIPGLVGFVAEFIVFQGS 401
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 19-409 2.71e-12

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 68.03  E-value: 2.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  19 FLFIVMFSFVLFKNIAWSGVFFVVDSNVF-----VLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMIClffFISSNMLML 93
Cdd:MTH00062   20 LLYSSGVGCCILVVNNVFNGLFIFDSLSFylillVLFLGLYSQVMFYNLLSGVSRFFLFLSLIFSILC---FCVNNSLLF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  94 YMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLFI-----YYKSMFMFTTCYFDFNISWELFFILSLSFM 168
Cdd:MTH00062   97 WFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCllylsLVNGSFNFSDWGSDDSVSLIVYYVLSFMFI 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 169 MKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAA 248
Cdd:MTH00062  177 TKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITACSELDGKRWLA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 249 YSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNS 328
Cdd:MTH00062  257 FLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLC 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 329 GVPPSLSFLSEFMIIVNSmvvSKLFFFMIFVYFLISFYYSLFLIVCCMMGKNYININNFNIGVALSTVVMMFNVFWLSLF 408
Cdd:MTH00062  337 SFPPTIQFFCEVFLVSSS---FGVLVYLLFWCFYLFFGGLVPLILLGHLLIRSESYESINVSNYSYLFFLIFLVFWCYLG 413


                  .
gi 1089667453 409 F 409
Cdd:MTH00062  414 F 414
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 159-343 6.90e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 66.71  E-value: 6.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 159 LFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRIL-----GSMNFVYNNFWVIIALLGMILA 233
Cdd:COG0651   207 AFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLtllfgADPALFLGTLLLVLGLLTMLVG 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 234 SFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSS 313
Cdd:COG0651   287 ALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRM 366

                         170       180       190
                  ....*....|....*....|....*....|
gi 1089667453 314 IFFGIIFSLVFLSNSGVPPSLSFLSEFMII 343
Cdd:COG0651   367 PLTAAAFLIGALALAGLPPLSGFVSKWLLL 396
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 85-303 3.81e-11

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 64.67  E-value: 3.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  85 FISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLfYAAICSfpfLFIYYKSMFM-FTTCYFDFNI-------- 155
Cdd:PRK12561  104 FLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFIL-YTALAS---IFILVAGLALaLSGDTFTFDLaelgaksy 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 156 --SWELFFILSL--SFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLR----ILGSMNFVYNNFWVIIAL 227
Cdd:PRK12561  180 plALELLLYAGFliAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRfnvqMLPDAHVYFAPALAILGV 259

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1089667453 228 LGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSGLMM-MLAHGYTSTLMFYLIGEFYHTTSTRMV 303
Cdd:PRK12561  260 VNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLG-IAAFTDLGISGAMLqMISHGLIAAALFFLTGVTYERTHTLSI 335
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 154-342 5.68e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 60.76  E-value: 5.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 154 NISWELFFILSLS---FMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRIL----------GSMNFVYNN 220
Cdd:PRK12667  217 NPPLALGVALALAlwaFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLytifgispslIDFRAALSP 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 221 FWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTST 300
Cdd:PRK12667  297 ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGT 376

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1089667453 301 RMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMI 342
Cdd:PRK12667  377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 176-377 8.39e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 60.33  E-value: 8.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 176 LHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLR----ILGS-MNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYS 250
Cdd:PRK06458  233 MHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyilIDAAiGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYS 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 251 SVTHMSFLLLTmiyIMMSSKV---SGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSN 327
Cdd:PRK06458  313 SIEHMGLIAFA---LGIGGPLgifAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAI 389

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1089667453 328 SGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIVCCMM 377
Cdd:PRK06458  390 AGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVRRVAGMV 439
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 160-347 1.62e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.51  E-value: 1.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 160 FFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFV-------YNNFWVIIALLGMIL 232
Cdd:PRK08375  205 FGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalgLGWLLAVLALLSMLV 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 233 ASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTS 312
Cdd:PRK08375  285 GSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRR 364

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1089667453 313 SIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSM 347
Cdd:PRK08375  365 MPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAV 399
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 175-373 2.05e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 56.14  E-value: 2.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 175 FLHLWLPKAhVEAPTTASMLLAGLLLKLGTAG-YLRILGSMNFVYNNFW---VIIALLGMILASFSCVFQSDAKSLAAYS 250
Cdd:PRK06525  225 PFYSWLPDA-MEAPTPASAYLHAASMVKVGVYiFARAIQSMGPIPHVIGyvgAVMAIVTLLYGFLMYLPQQDMKRLLAYS 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 251 SVTHMSFLLLTMIYIMMSSKVS---GLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSN 327
Cdd:PRK06525  304 TITQLGYMFFGLSLAILGSRLAlegSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAI 383

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1089667453 328 SGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLISFYYSLFLIV 373
Cdd:PRK06525  384 TGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLLLIESVASFAW 429
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 85-302 1.92e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 53.17  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  85 FISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLfYAAICSFPFLFIYYKSMFMFTTCYFD--------FNIS 156
Cdd:PRK02546  132 FAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFIL-YTAGSSLFILLAALAMAFYGDTPTFDmtalaakdFGLG 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 157 WELFFILSL--SFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLR----ILGSMNFVYNNFWVIIALLGM 230
Cdd:PRK02546  211 FQLLCYAGLliAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRmnagMLPDAHAQFAPLLIVLGVVNI 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1089667453 231 ILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSGLMM-MLAHGYTSTLMFYLIGEFYHTTSTRM 302
Cdd:PRK02546  291 IYAALTSFAQRNLKRKIAYSSISHMGFVLIG-IGSFTDLGTSGAMLqMISHGLIGASLFFLVGATYDRTHTLM 362
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 76-361 4.96e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 48.10  E-value: 4.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  76 VLIMICLFFfiSSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAICSFPFLF-------------IYYKS 142
Cdd:MTH00196    3 ALGILCLIS--SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFgcallcgttgglhLSYIN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 143 MFMFTTCYFDFNISWELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKlgtaGYLRILGSMNFVYNnFW 222
Cdd:MTH00196   81 LVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL----GIFSILVSIGLNVN-IL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 223 VIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFyhTTSTRM 302
Cdd:MTH00196  156 LIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSIILAL--NVYKNL 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1089667453 303 VYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVnSMVVSKLFFFMIFVYF 361
Cdd:MTH00196  234 IIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILL-SGVVYQYYLIFLLAVF 291
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 73-343 1.05e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.80  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  73 LSAVLIMICLFFFISSNMLMLYMYFELSMFPILIMILGFGSQIEKINSGYYLLFYAAIcSFPFLFIYYKSMFmFTTCYFD 152
Cdd:PRK08667  116 LTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQL-STVFLMLGIIVLF-IQTGSFE 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 153 FNISWELFFILSLSFMMKF-------PVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNNFWVII 225
Cdd:PRK08667  194 LSPLGASAGILSLVFLLLFlgfgikaGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLI 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 226 ALLGMILASFSCVF---QSDAKSLAAYSSVTHMSFLL----LTMIY-------IMMSSKVSGLMMMLAHGYTSTLMFYLI 291
Cdd:PRK08667  274 LLAGSISALLGVIYalkEHDLKGLLAYSSIENIGIILmgigLYVIFgvygldtLALLALGGALFHSLNHALFKSLLFLTA 353

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1089667453 292 GEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMII 343
Cdd:PRK08667  354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLY 405
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 36-343 1.41e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.12  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  36 SGVFFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMICLFFFISSNMLMLYMYFELSMFPILIMIlGFGSQI 115
Cdd:PRK06589   84 LGLIFLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNN 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 116 EKINSGYY----LLFYAAICSFPFLFIYYK---SMFMFTTCYFDFNISwELFFILSLSFMMKFPVYFLHLWLPKAHVEAP 188
Cdd:PRK06589  163 ISLSGGYKylkiLMISALLLFLPAVILIYTktgNLDFVSGGLFSKNQS-IILLLMFIYGIAKTAIFPVHSWLPAAMVAHY 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 189 TTASMLLAGLLLKLGTAGYLRIL--------GSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLL 260
Cdd:PRK06589  242 PVSALLHAVIVVKTGLFCIYKILlyifglsyLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALL 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 261 TMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEF 340
Cdd:PRK06589  322 SAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKF 401


                  ...
gi 1089667453 341 MII 343
Cdd:PRK06589  402 LIL 404
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 160-363 4.73e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 4.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 160 FFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSM--NFVYNNFWVIIALLGMI---LAS 234
Cdd:PRK08676  209 FLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFsiaVAA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 235 FSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSI 314
Cdd:PRK08676  289 FSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQP 368

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1089667453 315 FFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSKLFFFMIFVYFLI 363
Cdd:PRK08676  369 VAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLL 417
ndhD CHL00011
NADH dehydrogenase subunit 4
 160-300 1.45e-04

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 43.78  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 160 FFIlslSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRI----LGSMNFVYNNFWVIIALLGMILASF 235
Cdd:CHL00011  217 FLI---AYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInmelLPHAHSIFSPWLVIVGAIQIIYAAS 293

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1089667453 236 SCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTST 300
Cdd:CHL00011  294 TSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRL 358
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 39-368 2.26e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 43.45  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453  39 FFVVDSNVFVLLIFMMIFIYGVVLISEKNFNLLMLSAVLIMiclffFISSNMLMLYMYFELSMFPILIMILGFGSQIEKI 118
Cdd:PRK08668   74 FAMISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGVLGV-----FLANDLLTLYIFWEIMTFSSFMMVPMGKKESRKA 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 119 NSGYYLLfyAAICSFPFLFIYYKSMFMFTTCYFD-----------FNISWELFFILSLSFMMKFPVYFLHLWLPKAHVEA 187
Cdd:PRK08668  149 SLKYFVL--SAIGAYAMLYAIFLIYAKTGTFDFAdisqglindtsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEA 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 188 PTTAS---------MLLAGLLLKLGTAGYLRILGSMNFVYNN--FWVIIALLG---MILASFSCVFQSDAKSLAAYSSVT 253
Cdd:PRK08668  227 PQSFSavlsgqlskLGAYGFLLVLYVLPGTKLFSEFGTYRGVplFNYILAWLGnisIIVGTLMAILQEDIKKLIAYSSVA 306

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 254 HMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEF-YHTTSTRMVYFLNSFFTSSIFFGIIFSLVfLSNSGVPP 332
Cdd:PRK08668  307 NGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAViYRTGTTKISEMGGLIEKMPFTFAMYLVAI-ISLAGIPP 385

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1089667453 333 SLSFLSEFMIIvNSMVVSKLFF--FMIFVYFLISFYYS 368
Cdd:PRK08668  386 MSGFASKWLIF-EALISKGMPItaFMAFFGSIGSFLYV 422
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 210-343 2.97e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 2.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 210 ILGSMNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFY 289
Cdd:COG1007   260 AFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFA 339

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1089667453 290 LIGEF-YHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMII 343
Cdd:COG1007   340 VILLLsRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVF 394
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 176-372 3.53e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 3.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 176 LHLWLPKAhVEAPTTAS-------MLlaglllklgTAG-YLriLGSMNFVY------NNFWVIIALLGMILASFSCVFQS 241
Cdd:COG1009   230 LHFWLPDA-MEGPTPVSallhaatMV---------KAGvYL--LARLSPLFalspvwLTVVAIIGAITALFAALIALAQT 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 242 DAKSLAAYSSVTHMSFLlltMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFS 321
Cdd:COG1009   298 DIKRVLAYSTVSQLGYM---FLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFL 374

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1089667453 322 LVFLSNSGVPPSLSFLSEFMII---VNSMVVSKLFFFMIFVYFLISFYYSLFLI 372
Cdd:COG1009   375 IGALSLAGIPPFAGFFSKEAILeaaLEAGGLGPLLLAVALLGAFLTAFYSFRLF 428
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 214-403 5.39e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 41.73  E-value: 5.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 214 MNFVYNNFWVIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFllltMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGE 293
Cdd:MTH00160  138 SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGW----MLSSMMISENLWLIYFLIYSIISLSIILLFNK 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 294 FyhttSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIvNSMVVSKLFFFMIFVYF--LISFYYSLFL 371
Cdd:MTH00160  214 F----NIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIII-QLLISNNMFFLLFILIMssLITLYFYLRI 288

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1089667453 372 IVCCMMGKNYININNFNIGVALSTVVMMFNVF 403
Cdd:MTH00160  289 SYSSLMLNYNKNKWNLKKKKNKFSLILNFLSF 320
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 176-373 5.40e-04

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 41.86  E-value: 5.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 176 LHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYNNFW----VIIALLGMILASFSCVFQSDAKSLAAYSS 251
Cdd:TIGR01770 222 FHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGFSEAWqiflAIIAFLSMLIGNFGALAQKKVKRLLAYSS 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 252 VTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMF--YLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSG 329
Cdd:TIGR01770 302 ISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFgvLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAG 381

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1089667453 330 VPPSLSFLSEFMIIVnSMVVSKLFFFMIFVYF--LISFYYSLFLIV 373
Cdd:TIGR01770 382 IPPLAGFFGKFYVFF-ALLKSGLYWLAVIAVLtsVIGAFYYLRVVK 426
PRK12650 PRK12650
DUF4040 family protein;
177-338 1.10e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 177 HLWLPKAHVEA-PTTAsmllAGLLLKLGTAG-YLRILGSMNFVYNNFW----VIIALLGMILASFSCVFQSDAKSLAAYS 250
Cdd:PRK12650  228 HFWLPEAMAAItPVSA----FLHAAAVVKAGiYLLLRFSPVFHDVAVWnwllIIVGMITALMGAVFAVQKTDLKKLTAYS 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 251 SVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGV 330
Cdd:PRK12650  304 TVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAV 383


                  ....*...
gi 1089667453 331 PPSLSFLS 338
Cdd:PRK12650  384 PPLFGFVS 391
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 158-300 1.18e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.09  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 158 ELFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRilgsMNFVYNNFWVIIALLGM---ILAS 234
Cdd:PRK07234  185 EAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVR----CALDVPGLDLIVRIFGVgtaLLGV 260

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1089667453 235 FSCVFQSDAKSLAAYSSVTHMSFLLLtmiyimmsSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTST 300
Cdd:PRK07234  261 LFALLEKDLKRMLAFSTISQLGFILA--------APLVGGLYALAHGLVKSTLFLCAGALPSRNFT 318
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
223-343 1.48e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 223 VIIALLGMILASFSCVFQSDAKSLAAYSSVTHMSFLLLTmIYIMMSSKVSGLMMMLAHGY-TSTLMFYLIGEFYHTTSTR 301
Cdd:PRK12663  276 ATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLG-LALGTPAGINGAIFYLVHDMvVKTALFLIAGSLVRLTGYR 354

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1089667453 302 MVYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMII 343
Cdd:PRK12663  355 SLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 176-344 3.48e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.36  E-value: 3.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 176 LHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSMNFVYN-----NFWVIIALLGMILASFSCVFQSDAKSLAAYS 250
Cdd:PRK08377  225 LNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGwssvlKLVIIMATLTVFFAELSALRQKNVKRMIAYS 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 251 SVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFFTSSIFFGIIFSLVFLSNSGV 330
Cdd:PRK08377  305 SIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGI 384

                         170
                  ....*....|....
gi 1089667453 331 PPSLSFLSEFMIIV 344
Cdd:PRK08377  385 PLFNVFWSKFRIIL 398
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 159-365 3.65e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.33  E-value: 3.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 159 LFFILSLSfmMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGYLRILGSM---NFV-----YNNFWVIIALLGM 230
Cdd:PRK12662  213 LFIMVGLF--IKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkaNFVfttlpFNNVFMILAALAI 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 231 ILASFSCVFQSDAKSLAAYSSVTHMSFLLLTMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTSTRMVYFLNSFF 310
Cdd:PRK12662  291 VFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLW 370

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1089667453 311 TSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIvnSMVVSKLFFFMIFVYFLISF 365
Cdd:PRK12662  371 KSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL--DAFIKSNAWIGLVVLLVGSG 423
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 160-374 7.70e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 38.30  E-value: 7.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 160 FFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTagylrILGSMNFVYNNFWVIIALLGMILASFSCVF 239
Cdd:MTH00198  302 YLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY-----ILLTSLVITSKLLLSVAIISLVVGAFGALN 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1089667453 240 QSDAKSLAAYSSVTHMSFLLL---TMIYIMMSSKVSGLMMMLAHGYTSTLMFYLIGEFYHTTST--------------RM 302
Cdd:MTH00198  377 QTRIKRLLAYSGIGHIGFILIgvsAGTYESLQASWTYAVTYLVSALASFTVICTLEEFGTRTPTsrqrdgsfgnynlvRR 456

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1089667453 303 VYFLNSFFTSSIFFGIIFSLVFLSNSGVPPSLSFLSEFMIIVNSMVVSklFFFMIFVYFLIsfyySLFLIVC 374
Cdd:MTH00198  457 LVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA--FSSSLSIYYLV----ALFAIIC 522
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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