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MAG: single-stranded-DNA-specific exonuclease RecJ [Candidatus Woykebacteria bacterium RIFCSPHIGHO2_12_FULL_45_10]
Protein Classification
single-stranded-DNA-specific exonuclease RecJ ( domain architecture ID 11427396 )
single-stranded-DNA-specific exonuclease RecJ is a specific 5'-3' exonuclease that plays an important role in DNA repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
2-521
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 595.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 2 EK RW EIY P ------- KISED L KI ----- Q LLANR N IT DKGSQ E D FL QTH L NL L S DP E k L FPELP K VIK R IKK A RVDK E L I 69
Cdd:COG0608 4 GR RW ILK P pdpelve ALAKE L GL splla R LLANR G IT TPEEA E A FL DPS L KD L H DP F - L LKDMD K AVE R LAE A IENG E K I 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 70 Y IYGD F DVDG ISAS A I L WET L NG LGA K V LP YIP E R HT EGYGL HN EA LAKL A AA G AK LII S VDCGI TAL E QTR YAK K LG L D 149
Cdd:COG0608 83 L IYGD Y DVDG ATST A L L VRF L RA LGA N V DY YIP N R FE EGYGL NP EA VERA A EQ G VD LII T VDCGI SSH E EVA YAK E LG I D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 150 LVI TDHH Q P Q E S LP K A F AI LH --------- TTG L S G S GVAFKLA N AL LA E FGGND E QFFRN - L E L AT LGTVAD M VPL V GE 219
Cdd:COG0608 163 VIV TDHH L P G E E LP P A D AI VN pkrpdcdyp FKE L A G V GVAFKLA Q AL RR E LRERP E PDLAE l L D L VA LGTVAD V VPL T GE 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 220 NR VI VK N GL RA L GK T E R L GLR S L YDE A E L S - K N I GTAE IGF IIS PR L NA M GR MES A LDSLR LLLT NNPDR AR K LA LK L G E 298
Cdd:COG0608 243 NR IL VK Q GL KR L RA T K R P GLR A L LEV A G L D p K E I TAED IGF ALG PR I NA A GR LGD A SLGVE LLLT DDEEE AR E LA EE L D E 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 299 T NR G R Q E STRQAF E H A KQEV E KNYN -- EA K LF V VSSAEYEQ GV V G L VA G R IA E AF HRPT A V ISEVSP - VS KGSARSI S GF 375
Cdd:COG0608 323 L NR E R K E IEAEIT E E A LAQI E ELPD le DP K VL V LYDEDWHP GV I G I VA S R LK E KY HRPT I V LAIDED g IA KGSARSI P GF 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 376 NINE A IHTHAE LL TAH GGH P MAAG FSIAQV N IP AFRER LTKTAEQL L KPAH L V P T L K ID A E ITADQINQ EL LDVVREF EP 455
Cdd:COG0608 403 DLYD A LDACSD LL LKF GGH A MAAG LTLKEE N LE AFRER FNEVVAEQ L AEED L E P V L E ID G E LPLSELTL EL AEELEQL EP 482
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 456 FG I GN L EP T FL LK NV E VV ES R M VGKDG K HLKL V LR VQ GR A L S AI G F GL G SR -- ELP K -- GT VD VVF T ISE 521
Cdd:COG0608 483 FG Q GN P EP V FL GR NV R VV SQ R I VGKDG N HLKL T LR DG GR R L D AI A F NA G DK le ELP N ag KR VD IAY T LDI 552
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
2-521
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 595.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 2 EK RW EIY P ------- KISED L KI ----- Q LLANR N IT DKGSQ E D FL QTH L NL L S DP E k L FPELP K VIK R IKK A RVDK E L I 69
Cdd:COG0608 4 GR RW ILK P pdpelve ALAKE L GL splla R LLANR G IT TPEEA E A FL DPS L KD L H DP F - L LKDMD K AVE R LAE A IENG E K I 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 70 Y IYGD F DVDG ISAS A I L WET L NG LGA K V LP YIP E R HT EGYGL HN EA LAKL A AA G AK LII S VDCGI TAL E QTR YAK K LG L D 149
Cdd:COG0608 83 L IYGD Y DVDG ATST A L L VRF L RA LGA N V DY YIP N R FE EGYGL NP EA VERA A EQ G VD LII T VDCGI SSH E EVA YAK E LG I D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 150 LVI TDHH Q P Q E S LP K A F AI LH --------- TTG L S G S GVAFKLA N AL LA E FGGND E QFFRN - L E L AT LGTVAD M VPL V GE 219
Cdd:COG0608 163 VIV TDHH L P G E E LP P A D AI VN pkrpdcdyp FKE L A G V GVAFKLA Q AL RR E LRERP E PDLAE l L D L VA LGTVAD V VPL T GE 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 220 NR VI VK N GL RA L GK T E R L GLR S L YDE A E L S - K N I GTAE IGF IIS PR L NA M GR MES A LDSLR LLLT NNPDR AR K LA LK L G E 298
Cdd:COG0608 243 NR IL VK Q GL KR L RA T K R P GLR A L LEV A G L D p K E I TAED IGF ALG PR I NA A GR LGD A SLGVE LLLT DDEEE AR E LA EE L D E 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 299 T NR G R Q E STRQAF E H A KQEV E KNYN -- EA K LF V VSSAEYEQ GV V G L VA G R IA E AF HRPT A V ISEVSP - VS KGSARSI S GF 375
Cdd:COG0608 323 L NR E R K E IEAEIT E E A LAQI E ELPD le DP K VL V LYDEDWHP GV I G I VA S R LK E KY HRPT I V LAIDED g IA KGSARSI P GF 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 376 NINE A IHTHAE LL TAH GGH P MAAG FSIAQV N IP AFRER LTKTAEQL L KPAH L V P T L K ID A E ITADQINQ EL LDVVREF EP 455
Cdd:COG0608 403 DLYD A LDACSD LL LKF GGH A MAAG LTLKEE N LE AFRER FNEVVAEQ L AEED L E P V L E ID G E LPLSELTL EL AEELEQL EP 482
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 456 FG I GN L EP T FL LK NV E VV ES R M VGKDG K HLKL V LR VQ GR A L S AI G F GL G SR -- ELP K -- GT VD VVF T ISE 521
Cdd:COG0608 483 FG Q GN P EP V FL GR NV R VV SQ R I VGKDG N HLKL T LR DG GR R L D AI A F NA G DK le ELP N ag KR VD IAY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
18-537
5.78e-161
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 468.71
E-value: 5.78e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 18 Q L LA N R N ITD KGSQ E D FL QTH L NL L SD P e K L FPELP K VIK R IKK A RVDK E L I Y IYGD F DVDGI SAS AIL W E T L NG LG A KV 97
Cdd:TIGR00644 7 Q I LA S R G ITD AEEL E N FL NPK L KD L PP P - F L LLDME K AVE R LIE A VENN E K I L IYGD Y DVDGI TST AIL V E F L EL LG V KV 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 98 LP YIP E R H TEGYG LHN EA LA KL AAA G AK LII S VD C GITA L E QTR YAK K LGLD LVI TDHH QPQ E S LP K A F AI LHTT ----- 172
Cdd:TIGR00644 86 DY YIP N R F TEGYG PNP EA FR KL HED G VS LII T VD N GITA H E EIK YAK E LGLD VIV TDHH LVP E D LP E A A AI VNPN rpdcn 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 173 ---- G L S G S GVAFKL AN AL LA E FGGNDEQFFRN L E L AT LGT V AD M VPL V GENR VI VK N GL RA L G K TE R L GL RS L YDE A EL 248
Cdd:TIGR00644 166 ypqk E L A G V GVAFKL VQ AL YE E LRKPKPDLEEF L D L VA LGT I AD V VPL T GENR AL VK K GL KV L R K QK R P GL KA L LEV A GV 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 249 S K NIGTAE - IGFII S PR L NA M GR MES A LDSLR LLLT NN P DR AR K LA LK L GET N RG R QESTRQAF E H A KQEV E KNYNEAKL 327
Cdd:TIGR00644 246 D K DKLSST d IGFII G PR I NA A GR LGD A SLGVE LLLT DD P KE AR E LA EE L DSL N QE R KDIEQTVL E E A LAIA E AEETNDSV 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 328 F VV SSAEYEQ GV V G L VA G R I AE AFHR P TA V IS -- E VSPVS KGS A RSISG FNINE A IHTHA E L L TAH - GGH P MAAG F S IAQ 404
Cdd:TIGR00644 326 I VV AKENWHE GV L G I VA S R L AE EYNK P VL V FA id E GKGIA KGS G RSISG IDLYD A LSEAR E S L FLK f GGH A MAAG L S LKR 405
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 405 V N IPA FRE R L TKTAEQL L KPAHLV P T L KI D A E ITADQ I NQ EL LDVVREF EPFG I GN L EP T F L LK NVE V VESRMV G kd G K H 484
Cdd:TIGR00644 406 E N LEE FRE K L NELFSKS L EKDESE P I L EV D G E LPPSD I DF EL IRQLESL EPFG Q GN P EP L F V LK DLR V EDIKLL G -- G N H 483
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1087948963 485 LKL V L RVQGRALS AI G F GL G SRE L PKG --- TV DV VFTISE N T W QSK KT IE L K IKD L 537
Cdd:TIGR00644 484 LKL S L KSGEKNIE AI A F NA G EQL L ELN gge PI DV AGKLKI N E W NGN KT PQ L I IKD I 539
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
61-537
5.26e-73
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 242.67
E-value: 5.26e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 61 K A RVDKEL I YIY GDFD V DG ISAS A ILWET L NG LG AKVLP Y - I P E R HTE GYGL HN E ALAKLA A A GA K LI IS VD C GI TALEQ 139
Cdd:PRK11070 64 N A LREGTR I IVV GDFD A DG ATST A LSVLA L RS LG CSNVD Y l V P N R FED GYGL SP E VVDQAH A R GA Q LI VT VD N GI SSHAG 143
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 140 TRY A KK LG LDLVI TDHH Q P Q E S LP K A F AI LH --------- TTG L S G S GVAF K L AN AL L A EF gg N D EQF F RN --------- 201
Cdd:PRK11070 144 VAH A HA LG IPVLV TDHH L P G E T LP A A D AI IN pnlrdcnfp SKS L A G V GVAF Y L ML AL R A FL -- R D QGW F DE rgiaipnla 221
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 202 -- L E L AT LGTVAD M VPL VGE NR VI V KN GL --- RA l GK T e R L G LRS L YDE A EL - SKNIGTAEI GF IIS PRLNA M GR MESAL 275
Cdd:PRK11070 222 el L D L VA LGTVAD V VPL DAN NR IL V WQ GL sri RA - GK C - R P G IKA L LEV A NR d AQKLAASDL GF ALG PRLNA A GR LDDMS 299
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 276 DSLR LLL TN N PDR AR K LA LK L GET N R grqes TR QAF E HAK Q E -------- V E KNYNEAKL - FVVSSA E YE QGVVG LV A G R 346
Cdd:PRK11070 300 VGVA LLL CD N IGE AR V LA NE L DAL N Q ----- TR KEI E QGM Q V ealtlcek L E RSSDTLPY g LAMYHP E WH QGVVG IL A S R 374
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 347 I A E A FHRP ta VI S e VS P VS ---- KGS A RSI S G FNINE A --- IH T - HAE L LTAH GGH P MAAG F S IAQVNIPA F RE R LTKTA 418
Cdd:PRK11070 375 I K E R FHRP -- VI A - FA P AG dgtl KGS G RSI Q G LHMRD A ler LD T l YPG L ILKF GGH A MAAG L S LEEDKFEL F QQ R FGELV 451
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 419 EQL L K P AH L VPTLKI D A E ITADQINQ E LLDVV R EFE P F G IGNL EP T F LLK n VEVVES R M VG K dg K HLK LVLRVQ G RA -- L 496
Cdd:PRK11070 452 TEW L D P SL L QGVVWS D G E LSPAEMSL E VAELL R DAG P W G QMFP EP L F DGR - FRLLQQ R L VG E -- R HLK VMVEPV G GG pl L 528
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1087948963 497 SA I G F GLGSREL P KG --- T V DVVFTISE N TWQSKKTIE L K I KDL 537
Cdd:PRK11070 529 DG I A F NVDTTLW P DN svr E V ELAYKLDI N EFRGNRSLQ L I I DHI 572
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
433-536
2.68e-36
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 130.69
E-value: 2.68e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 433 IDAE ITADQ I NQ EL LDVVREF EPFG I GN L EP T F L L K NV E V VES R MV GKDG K HLKL V LR VQ GR A L S AI G F GL G SREL --- P 509
Cdd:pfam17768 1 IDAE LPLSD I TL EL IEELERL EPFG Q GN P EP V F A L R NV R V LDV R II GKDG N HLKL T LR DG GR S L D AI A F NM G ELLP ela S 80
90 100
....*....|....*....|....*..
gi 1087948963 510 KGT VD VVF T ISE N T W QSKKTIE L K IKD 536
Cdd:pfam17768 81 GDK VD IAY T LEI N E W NGRRSLQ L R IKD 107
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
2-521
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 595.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 2 EK RW EIY P ------- KISED L KI ----- Q LLANR N IT DKGSQ E D FL QTH L NL L S DP E k L FPELP K VIK R IKK A RVDK E L I 69
Cdd:COG0608 4 GR RW ILK P pdpelve ALAKE L GL splla R LLANR G IT TPEEA E A FL DPS L KD L H DP F - L LKDMD K AVE R LAE A IENG E K I 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 70 Y IYGD F DVDG ISAS A I L WET L NG LGA K V LP YIP E R HT EGYGL HN EA LAKL A AA G AK LII S VDCGI TAL E QTR YAK K LG L D 149
Cdd:COG0608 83 L IYGD Y DVDG ATST A L L VRF L RA LGA N V DY YIP N R FE EGYGL NP EA VERA A EQ G VD LII T VDCGI SSH E EVA YAK E LG I D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 150 LVI TDHH Q P Q E S LP K A F AI LH --------- TTG L S G S GVAFKLA N AL LA E FGGND E QFFRN - L E L AT LGTVAD M VPL V GE 219
Cdd:COG0608 163 VIV TDHH L P G E E LP P A D AI VN pkrpdcdyp FKE L A G V GVAFKLA Q AL RR E LRERP E PDLAE l L D L VA LGTVAD V VPL T GE 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 220 NR VI VK N GL RA L GK T E R L GLR S L YDE A E L S - K N I GTAE IGF IIS PR L NA M GR MES A LDSLR LLLT NNPDR AR K LA LK L G E 298
Cdd:COG0608 243 NR IL VK Q GL KR L RA T K R P GLR A L LEV A G L D p K E I TAED IGF ALG PR I NA A GR LGD A SLGVE LLLT DDEEE AR E LA EE L D E 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 299 T NR G R Q E STRQAF E H A KQEV E KNYN -- EA K LF V VSSAEYEQ GV V G L VA G R IA E AF HRPT A V ISEVSP - VS KGSARSI S GF 375
Cdd:COG0608 323 L NR E R K E IEAEIT E E A LAQI E ELPD le DP K VL V LYDEDWHP GV I G I VA S R LK E KY HRPT I V LAIDED g IA KGSARSI P GF 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 376 NINE A IHTHAE LL TAH GGH P MAAG FSIAQV N IP AFRER LTKTAEQL L KPAH L V P T L K ID A E ITADQINQ EL LDVVREF EP 455
Cdd:COG0608 403 DLYD A LDACSD LL LKF GGH A MAAG LTLKEE N LE AFRER FNEVVAEQ L AEED L E P V L E ID G E LPLSELTL EL AEELEQL EP 482
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 456 FG I GN L EP T FL LK NV E VV ES R M VGKDG K HLKL V LR VQ GR A L S AI G F GL G SR -- ELP K -- GT VD VVF T ISE 521
Cdd:COG0608 483 FG Q GN P EP V FL GR NV R VV SQ R I VGKDG N HLKL T LR DG GR R L D AI A F NA G DK le ELP N ag KR VD IAY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
18-537
5.78e-161
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 468.71
E-value: 5.78e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 18 Q L LA N R N ITD KGSQ E D FL QTH L NL L SD P e K L FPELP K VIK R IKK A RVDK E L I Y IYGD F DVDGI SAS AIL W E T L NG LG A KV 97
Cdd:TIGR00644 7 Q I LA S R G ITD AEEL E N FL NPK L KD L PP P - F L LLDME K AVE R LIE A VENN E K I L IYGD Y DVDGI TST AIL V E F L EL LG V KV 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 98 LP YIP E R H TEGYG LHN EA LA KL AAA G AK LII S VD C GITA L E QTR YAK K LGLD LVI TDHH QPQ E S LP K A F AI LHTT ----- 172
Cdd:TIGR00644 86 DY YIP N R F TEGYG PNP EA FR KL HED G VS LII T VD N GITA H E EIK YAK E LGLD VIV TDHH LVP E D LP E A A AI VNPN rpdcn 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 173 ---- G L S G S GVAFKL AN AL LA E FGGNDEQFFRN L E L AT LGT V AD M VPL V GENR VI VK N GL RA L G K TE R L GL RS L YDE A EL 248
Cdd:TIGR00644 166 ypqk E L A G V GVAFKL VQ AL YE E LRKPKPDLEEF L D L VA LGT I AD V VPL T GENR AL VK K GL KV L R K QK R P GL KA L LEV A GV 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 249 S K NIGTAE - IGFII S PR L NA M GR MES A LDSLR LLLT NN P DR AR K LA LK L GET N RG R QESTRQAF E H A KQEV E KNYNEAKL 327
Cdd:TIGR00644 246 D K DKLSST d IGFII G PR I NA A GR LGD A SLGVE LLLT DD P KE AR E LA EE L DSL N QE R KDIEQTVL E E A LAIA E AEETNDSV 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 328 F VV SSAEYEQ GV V G L VA G R I AE AFHR P TA V IS -- E VSPVS KGS A RSISG FNINE A IHTHA E L L TAH - GGH P MAAG F S IAQ 404
Cdd:TIGR00644 326 I VV AKENWHE GV L G I VA S R L AE EYNK P VL V FA id E GKGIA KGS G RSISG IDLYD A LSEAR E S L FLK f GGH A MAAG L S LKR 405
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 405 V N IPA FRE R L TKTAEQL L KPAHLV P T L KI D A E ITADQ I NQ EL LDVVREF EPFG I GN L EP T F L LK NVE V VESRMV G kd G K H 484
Cdd:TIGR00644 406 E N LEE FRE K L NELFSKS L EKDESE P I L EV D G E LPPSD I DF EL IRQLESL EPFG Q GN P EP L F V LK DLR V EDIKLL G -- G N H 483
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1087948963 485 LKL V L RVQGRALS AI G F GL G SRE L PKG --- TV DV VFTISE N T W QSK KT IE L K IKD L 537
Cdd:TIGR00644 484 LKL S L KSGEKNIE AI A F NA G EQL L ELN gge PI DV AGKLKI N E W NGN KT PQ L I IKD I 539
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
61-537
5.26e-73
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 242.67
E-value: 5.26e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 61 K A RVDKEL I YIY GDFD V DG ISAS A ILWET L NG LG AKVLP Y - I P E R HTE GYGL HN E ALAKLA A A GA K LI IS VD C GI TALEQ 139
Cdd:PRK11070 64 N A LREGTR I IVV GDFD A DG ATST A LSVLA L RS LG CSNVD Y l V P N R FED GYGL SP E VVDQAH A R GA Q LI VT VD N GI SSHAG 143
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 140 TRY A KK LG LDLVI TDHH Q P Q E S LP K A F AI LH --------- TTG L S G S GVAF K L AN AL L A EF gg N D EQF F RN --------- 201
Cdd:PRK11070 144 VAH A HA LG IPVLV TDHH L P G E T LP A A D AI IN pnlrdcnfp SKS L A G V GVAF Y L ML AL R A FL -- R D QGW F DE rgiaipnla 221
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 202 -- L E L AT LGTVAD M VPL VGE NR VI V KN GL --- RA l GK T e R L G LRS L YDE A EL - SKNIGTAEI GF IIS PRLNA M GR MESAL 275
Cdd:PRK11070 222 el L D L VA LGTVAD V VPL DAN NR IL V WQ GL sri RA - GK C - R P G IKA L LEV A NR d AQKLAASDL GF ALG PRLNA A GR LDDMS 299
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 276 DSLR LLL TN N PDR AR K LA LK L GET N R grqes TR QAF E HAK Q E -------- V E KNYNEAKL - FVVSSA E YE QGVVG LV A G R 346
Cdd:PRK11070 300 VGVA LLL CD N IGE AR V LA NE L DAL N Q ----- TR KEI E QGM Q V ealtlcek L E RSSDTLPY g LAMYHP E WH QGVVG IL A S R 374
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 347 I A E A FHRP ta VI S e VS P VS ---- KGS A RSI S G FNINE A --- IH T - HAE L LTAH GGH P MAAG F S IAQVNIPA F RE R LTKTA 418
Cdd:PRK11070 375 I K E R FHRP -- VI A - FA P AG dgtl KGS G RSI Q G LHMRD A ler LD T l YPG L ILKF GGH A MAAG L S LEEDKFEL F QQ R FGELV 451
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 419 EQL L K P AH L VPTLKI D A E ITADQINQ E LLDVV R EFE P F G IGNL EP T F LLK n VEVVES R M VG K dg K HLK LVLRVQ G RA -- L 496
Cdd:PRK11070 452 TEW L D P SL L QGVVWS D G E LSPAEMSL E VAELL R DAG P W G QMFP EP L F DGR - FRLLQQ R L VG E -- R HLK VMVEPV G GG pl L 528
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1087948963 497 SA I G F GLGSREL P KG --- T V DVVFTISE N TWQSKKTIE L K I KDL 537
Cdd:PRK11070 529 DG I A F NVDTTLW P DN svr E V ELAYKLDI N EFRGNRSLQ L I I DHI 572
RecJ
COG4199 ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
1-538
7.84e-54
ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
Pssm-ID: 443353 [Multi-domain]
Cd Length: 774
Bit Score: 194.53
E-value: 7.84e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 1 MEKRW E IYPKISED L KIQ LL AN R NITDKGSQEDF L QT H LNL L S D P - EK L FPELPKVIK RI KKARVDKEL I YIYG D F D V D G 79
Cdd:COG4199 13 KKEEK E ESELLLSL L VLL LL LL R GLLETEEAAEE L EL H ELF L H D D l LL L MMLMAVARE RI AIIEEAIII I EGDD D D D G D D 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 80 ISASAILWET L N G LGAKVLPYIPE R HTE G Y G lh NEAL A KL AA A GA K LII S V DCG I TALEQTRY A KKL GLD LV I T DHH Q P Q 159
Cdd:COG4199 93 TTSVVSTTLL L L G ALLDYYIPNRF R FGG G P G -- EAGP A EA AA G GA G LII I V TVI I AVNGVIAA A EEK GLD II I D DHH H P E 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 160 ESL P K A F AI LHT --------- TG L S G S GVA FKL A N ALL AEFGGNDEQF frnle LA T L GTV AD M V P L VGEN R VIVKNG L RA 230
Cdd:COG4199 171 HEE P L A D AI APP ppppppppf GE L A G G GVA AAV A A ALL LGLPLLLLLL ----- LA L L TAA AD L V L L LENR R LLRRLL L LK 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 231 L GK TERLGL RS L YDEAE L SKN I GTA E I GF IIS P R LNA MG R MES A LDSLR LLL TNNPDRARKL A LKLGET N RG RQE STRQA 310
Cdd:COG4199 246 L LS TERLGL LL L KAALL L ASI I EEE E E GF GGG P I LNA AA R LGR A AAAVA LLL LLDEEEEEEA A ELAEAQ N EE RQE IVKII 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 311 FEH A - KQ E V E KNYNEAKLF VV SSAEYEQ G V VG L V AGRIAEAFH RP TAVISEVSP --- VSK G SAR SIS G F NINEAIHTHAE 386
Cdd:COG4199 326 EAE A i EE E E E AEEKDDNVV VV VAEGGWN G G VG V V VSVVVVKYR RP PLILLIDDE ekg KAG G GSS SIS F F LFLLELSLERL 405
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 387 LL TAH GG HPM AA GFSIAQVNIPAF R ER L ----- TKTA E QL L K P AHLVPT L K I DA EI TADQ I NQ ELL dvvref E P F G I G NL 461
Cdd:COG4199 406 LL LFG GG GGA AA AALLLEDVEDLL R LL L elaal LELL E ED L P P ELIDDL L L I SD EI IIII I EE ELL ------ L P P G G G PP 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 462 E P TFLLKNVEVVES R MV G KDG KHLK LV L RVQ G RA L S A I GF GL G S --- R ELP KGTVD VV FTI S E N T W QSKKTIE L K I K D LK 538
Cdd:COG4199 480 P P PKFVLLEIAINK R RI G GAN KHLK KL L TGE G EL L D A G GF FG G G lle E ELP DTIIV VV GGL S I N E W NNRRKPQ L M I Q D IA 559
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
433-536
2.68e-36
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 130.69
E-value: 2.68e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 433 IDAE ITADQ I NQ EL LDVVREF EPFG I GN L EP T F L L K NV E V VES R MV GKDG K HLKL V LR VQ GR A L S AI G F GL G SREL --- P 509
Cdd:pfam17768 1 IDAE LPLSD I TL EL IEELERL EPFG Q GN P EP V F A L R NV R V LDV R II GKDG N HLKL T LR DG GR S L D AI A F NM G ELLP ela S 80
90 100
....*....|....*....|....*..
gi 1087948963 510 KGT VD VVF T ISE N T W QSKKTIE L K IKD 536
Cdd:pfam17768 81 GDK VD IAY T LEI N E W NGRRSLQ L R IKD 107
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
69-209
4.08e-31
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 117.67
E-value: 4.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 69 I Y IYG DF -- D V DGI SASAI L WET L NG L - G AK V LP YIP E R HT EGYG L h N EALAKLAAAGAK L I I S VDCGI TAL E QTRY AK K 145
Cdd:pfam01368 2 I V IYG HY np D G DGI GSALG L YRY L KE L v G PD V EY YIP D R LE EGYG I - N PEAIEELIDFDT L L I T VDCGI KSV E GIEL AK E 80
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1087948963 146 LG L D LVIT DHH Q P QES LP K A F AI LH --- TTGL S G S G V A FKL ana L LAEF G GNDEQFFRN - LE L AT LG T 209
Cdd:pfam01368 81 LG I D VIVI DHH L P NDF LP D A D AI IN pre PPAS S T S E V V FKL --- L QYAY G EEGKEIDKE l AD L LL LG I 145
DHHA1
pfam02272 DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ...
290-414
2.25e-11
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain]
Cd Length: 139
Bit Score: 61.69
E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087948963 290 R K LAL K lg E TNRGRQESTRQAFEHAKQEV E KNYNEAK L FVVSSAEYEQ G VV G LV A G R IAEAFHR P TA V ISEVSPVS K -- G 367
Cdd:pfam02272 8 L K ELE K -- E LEELKEALALLKAKELLEKA E EINGVKV L VAEVGEGWDA G AL G IA A D R LKKKLGD P VI V LVAKEDGD K vk V 85
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1087948963 368 SARS IS -- G FNIN E AIHTH A EL L TAH - GGH PM AAG FS I AQVNIPAFR E R L 414
Cdd:pfam02272 86 SARS SK dk G VDAG E LLKEV A AI L GGG g GGH DL AAG AG I DAEKLDEAL E L L 135
NrnA
COG0618 nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and ...
366-414
1.26e-03
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440383 [Multi-domain]
Cd Length: 312
Bit Score: 40.94
E-value: 1.26e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1087948963 366 K G S A RS ISGFNIN E aihthae LLTAH -- GGH PM AAG FS I AQVNIPAFR E R L 414
Cdd:COG0618 265 K V S L RS KGRVDVG E ------- IAREF gg GGH AR AAG AT I PGLDLEEVV E K L 308
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
