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Conserved domains on  [gi|1087948954|gb|OGY30476|]
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MAG: hypothetical protein A3F35_03505 [Candidatus Woykebacteria bacterium RIFCSPHIGHO2_12_FULL_45_10]

Protein Classification

AbrB/MazE/SpoVT family DNA-binding domain-containing protein( domain architecture ID 10005093)

AbrB/MazE/SpoVT family DNA-binding domain-containing protein similar to Bacillus subtilis transition state regulatory protein AbrB and Mycobacterium tuberculosis antitoxin VapB27, the antitoxin component of a type II toxin-antitoxin system whose cognate toxin is VapC27

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AbrB COG2002
Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene ...
 3-73 4.59e-06

Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module [Transcription, Defense mechanisms];


:

Pssm-ID: 441605 [Multi-domain]  Cd Length: 70  Bit Score: 40.34  E-value: 4.59e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1087948954  3 KTATITGKRQITIPIKLFKAANLDKSRKVLVSERQGEIVITSLLSKVEKLAGSLKmpeRWKGKDLEAIIEE 73
Cdd:COG2002    2 KTVKVTSKGQITIPKEIREALGIKEGDKLEVIVDGDGIVLKPVKPPVEELRGLLK---GLSLEELEEAIRE 69
 
Name Accession Description Interval E-value
AbrB COG2002
Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene ...
 3-73 4.59e-06

Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module [Transcription, Defense mechanisms];


Pssm-ID: 441605 [Multi-domain]  Cd Length: 70  Bit Score: 40.34  E-value: 4.59e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1087948954  3 KTATITGKRQITIPIKLFKAANLDKSRKVLVSERQGEIVITSLLSKVEKLAGSLKmpeRWKGKDLEAIIEE 73
Cdd:COG2002    2 KTVKVTSKGQITIPKEIREALGIKEGDKLEVIVDGDGIVLKPVKPPVEELRGLLK---GLSLEELEEAIRE 69
 
Name Accession Description Interval E-value
AbrB COG2002
Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene ...
 3-73 4.59e-06

Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module [Transcription, Defense mechanisms];


Pssm-ID: 441605 [Multi-domain]  Cd Length: 70  Bit Score: 40.34  E-value: 4.59e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1087948954  3 KTATITGKRQITIPIKLFKAANLDKSRKVLVSERQGEIVITSLLSKVEKLAGSLKmpeRWKGKDLEAIIEE 73
Cdd:COG2002    2 KTVKVTSKGQITIPKEIREALGIKEGDKLEVIVDGDGIVLKPVKPPVEELRGLLK---GLSLEELEEAIRE 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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