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Conserved domains on  [gi|108742916|gb|ABG02077|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Microcebus rufus]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 765.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 765.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-458 1.86e-78

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 251.92  E-value: 1.86e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSnLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQL-LLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 378 ELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGL 457
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDL 474

                 .
gi 108742916 458 T 458
Cdd:COG1008  475 I 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 2.86e-70

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 230.60  E-value: 2.86e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  139 QTeRLNAGLYFLFYTLIGSLPLLVALIYvQNSLGSLNYLVMNMWSQDMSgLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILG-LYFLGGGTFDLLELLNLPLP-FGVQTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  378 ELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPS-YTRENTLMSMHMLPLIMLTFNPKIIMG 456
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPDlNGREIAVLAPLVVLILFLGLYPNPLLD 468

                  ...
gi 108742916  457 LTY 459
Cdd:TIGR01972 469 LTE 471
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 2.53e-62

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 204.08  E-value: 2.53e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  112 ATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  192 SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  272 TSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMLLARGLQA 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 108742916  351 FLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGF 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 765.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 604.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMG 456
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 568.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGL 457
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGM 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-458 3.10e-174

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 496.40  E-value: 3.10e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLL-NQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLkNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  80 SQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 160 LLVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 240 GYGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 320 GLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFN 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742916 400 MLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLT 458
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWGWT 459
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 4.80e-154

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 444.77  E-value: 4.80e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   3 KIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFS-LMFFSDSLSSPLLMLTVWLLPLMIMASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSnLYLSYDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  82 HHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 162 VALIYVQNSLGSLNYLVMNMwsqDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYILYF---SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 242 GMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGL 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 322 TSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNML 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 108742916 402 ITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKII 454
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 2.26e-150

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 435.56  E-value: 2.26e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLL-NQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  80 SQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 160 LLVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 240 GYGMLRLTMILN-PTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 319 HGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGF 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742916 399 NMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIM 455
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-457 1.65e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 343.67  E-value: 1.65e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNStmiWINMTSYSLMISLMTLPLLNQtENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNS---WWLVQSLLFLLSFLFMLLFSL-SFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QhhLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00163  77 E--SVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSqdmsglWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNFFG------SLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGL 457
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-457 7.52e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 333.34  E-value: 7.52e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  37 MTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMASQHhlTKESLMRKKLYLSMLTFLQMFLIMTFTATELI 116
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 117 LFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSglwSSNLLW 196
Cdd:MTH00150  79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLS---SMGLWG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 197 LACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSIC 276
Cdd:MTH00150 156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 277 LRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMA 356
Cdd:MTH00150 236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 357 TWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTL 436
Cdd:MTH00150 316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395
                        410       420
                 ....*....|....*....|.
gi 108742916 437 MSMHMLPLIMLTFNPKIIMGL 457
Cdd:MTH00150 396 LLLHWVPLLLLILKSDLLFMW 416
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
5-455 7.49e-102

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 311.53  E-value: 7.49e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   5 IMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHL 84
Cdd:MTH00205   2 SIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  85 TKESlmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL 164
Cdd:MTH00205  82 KSNK--NSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 165 IYVQNSLGSLNYLVMNMWSQDMSGLWssnLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGML 244
Cdd:MTH00205 160 FFLNSLNFSLSMFFNFPLNFSDFYLF---LYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLI 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 245 RLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSS 324
Cdd:MTH00205 237 RITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSS 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 325 MLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITA 404
Cdd:MTH00205 317 GMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSG 396
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|.
gi 108742916 405 LYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIM 455
Cdd:MTH00205 397 AYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 3.43e-100

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 307.44  E-value: 3.43e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTmIWINMTSYSLMISLMTLPLLNQTENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00014   1 MLKLIMPLISLLLLPLIKYPW-SWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  81 QHhlTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00014  80 FK--IFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 161 LVALIYVQNSLGSLNYLVMNMWSqdmSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00014 158 LMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00014 235 YGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHG 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNM 400
Cdd:MTH00014 315 LCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITS 394
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 108742916 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKII 454
Cdd:MTH00014 395 FLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-458 1.86e-78

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 251.92  E-value: 1.86e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSnLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQL-LLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 378 ELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGL 457
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDL 474

                 .
gi 108742916 458 T 458
Cdd:COG1008  475 I 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 2.86e-70

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 230.60  E-value: 2.86e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  139 QTeRLNAGLYFLFYTLIGSLPLLVALIYvQNSLGSLNYLVMNMWSQDMSgLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILG-LYFLGGGTFDLLELLNLPLP-FGVQTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  378 ELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPS-YTRENTLMSMHMLPLIMLTFNPKIIMG 456
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPDlNGREIAVLAPLVVLILFLGLYPNPLLD 468

                  ...
gi 108742916  457 LTY 459
Cdd:TIGR01972 469 LTE 471
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-454 2.13e-69

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 228.55  E-value: 2.13e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGn 138
Cdd:PRK05846  81 DGISLLLVVLTALLTPLAVLASWEEIKK----RVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QTERLNAGLYFLFYTLIGSLPLLVALIYV----QNSLGSLNYLVmnmWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHL 214
Cdd:PRK05846 156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDIAD---LLNLPLPPGVQYWLFLAFFIAFAVKMPMFPLHT 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSH 293
Cdd:PRK05846 233 WLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 294 MALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFI 373
Cdd:PRK05846 313 MGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 374 NLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKI 453
Cdd:PRK05846 393 GFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKP 472

                 .
gi 108742916 454 I 454
Cdd:PRK05846 473 L 473
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
53-410 1.44e-64

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 215.69  E-value: 1.44e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  53 SLMFFSDSLSSPLLMLTVWLLPLMIMASQH---HLTKESLMRkklylsmLTFLQMFLIMTFTATELILFYILFESTLIPT 129
Cdd:MTH00217  73 PVVFAVDGISIFFLILTALLTPICILISWNsikFLIKEFLLC-------LLVIEILLMGVFTILDLVGFYILFEGILIPM 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 130 LVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYlvMNMWSQDMSGLWSsNLLWLACIMAFMVKMPL 209
Cdd:MTH00217 146 FLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDY--QALCCLKIEKELQ-YFIFLGFFLSLAIKIPK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAY 288
Cdd:MTH00217 223 IPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAY 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 289 SSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLA 368
Cdd:MTH00217 303 SSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANAS 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 108742916 369 LPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYM 410
Cdd:MTH00217 383 IPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
53-410 5.35e-63

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 211.46  E-value: 5.35e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  53 SLMFFSDSLSSPLLMLTVWLLPLMIMASQH---HLTKESLMrkklylsMLTFLQMFLIMTFTATELILFYILFESTLIPT 129
Cdd:MTH00204  76 PLVFAVDGVSLFFILLTTLLIPICILISWKsikFLFKEFLL-------CLLFLEVLLIGVFSVLDLLLFYILFEGILIPM 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 130 LVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNY-LVMNMWSQDMSGLWssnlLWLACIMAFMVKMP 208
Cdd:MTH00204 149 FLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYqILLNIKLPLSIQKW----LLVGFFLSLAVKIP 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 209 LYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFI-MLCLWGMIMTSSICLRQTDLKSLIA 287
Cdd:MTH00204 225 QIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIA 304
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 288 YSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNL 367
Cdd:MTH00204 305 YSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANM 384
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 108742916 368 ALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYM 410
Cdd:MTH00204 385 GFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 2.53e-62

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 204.08  E-value: 2.53e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  112 ATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  192 SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  272 TSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMLLARGLQA 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 108742916  351 FLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGF 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
54-409 3.21e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 199.38  E-value: 3.21e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  54 LMFFSDSLSSPLLMLTVWLLPLMIMASQHHLtkeSLMRKKLYLSMLTfLQMFLIMTFTATELILFYILFESTLIPTLVII 133
Cdd:MTH00226  96 LVFAVDGISIYFIILTGFIVPCSILISWHSV---KYLTKSFLICMLI-LEFLLYAVFSVLDIFMFYILFEGVLIPMYLIL 171
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 134 TRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLwSSNLLWLACIMAFMVKMPLYGLH 213
Cdd:MTH00226 172 GIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVSEQ-TQKWIFLGIFLAMAVKIPIFPFH 250
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 214 LWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTM-ILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVS 292
Cdd:MTH00226 251 IWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWpILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVA 330
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 293 HMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPF 372
Cdd:MTH00226 331 HMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPS 410
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 108742916 373 INLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLY 409
Cdd:MTH00226 411 GNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-430 5.41e-42

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 155.63  E-value: 5.41e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQhhltkESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:PRK06473  78 DGLSLPLLVLNSLLTLIAIYSSD-----ESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSgLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLP-LSTQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFimLCLWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK06473 231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGL---QAFLPLMATWWLLANLTNLALPPF 372
Cdd:PRK06473 309 YILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGM 388
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 108742916 373 INLIGELFVIMASFswsNLTIIMTGFNMLITALYSLYMLTMTQR---GKFTYHIHNIKPSY 430
Cdd:PRK06473 389 VGFIAEFLVFRGSF---PIFPVQTLLCMIGTGLTAVYFLLLVNRvffGRLTAELSNLPRVL 446
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
101-447 7.25e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 153.14  E-value: 7.25e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 101 FLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVaLIYVQNSLGSLNYLVMN 180
Cdd:MTH00094  70 LLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLF-VYLKNFFFFSLCYFDFF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 181 MwsqdmsglwsSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRltmILNPTTKIMAYP 260
Cdd:MTH00094 149 L----------SWEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLR---ILGSLNFVYNNF 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 261 FIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSR 340
Cdd:MTH00094 216 WIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSR 295
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 341 TMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFT 420
Cdd:MTH00094 296 LIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKF 375
                        330       340
                 ....*....|....*....|....*..
gi 108742916 421 YHIHNIKPSYTRENTLMSMHMLPLIML 447
Cdd:MTH00094 376 SNFNNFNVGLSLPLVFMMFNMFWLSLF 402
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-457 2.08e-40

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 151.34  E-value: 2.08e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmrKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:PRK12561  58 DGLSMPLVLLSGLITTLSIFASWKVTRK-----PRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMsGLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK12561 133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSY-PLALELLLYAGFLIAFGVKLPIFPLHTWLPD 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYP-FIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK12561 211 AHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIG 377
Cdd:PRK12561 291 LLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 378 ELFVIMA-------SFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGKFTYHIH------NIKPsytRENTLMSMHMLPL 444
Cdd:PRK12561 371 ELTVFLGitssdvySSTFRTITILLAAVGLILTPIYLLSMLRRVFYGPRSELLPalavveDAKP---RELFIALSLLVPI 447
                        410
                 ....*....|...
gi 108742916 445 IMLTFNPKIIMGL 457
Cdd:PRK12561 448 IGIGFYPKLATQL 460
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-409 6.00e-39

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 145.67  E-value: 6.00e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  52 FSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESlmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLV 131
Cdd:COG0651   68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHER--RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYG 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 132 IITRWGNQtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSnLLWLACIMAFMVKMPLYG 211
Cdd:COG0651  146 LVALGGTK-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLL-AAFALLLVGFGIKAALFP 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWG--MIMTSSICLRQTDLKSLIAYS 289
Cdd:COG0651  224 LHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLGTLLLVLGLltMLVGALGALAQRDLKRLLAYS 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 290 SVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLAL 369
Cdd:COG0651  304 SVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGL 383
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 108742916 370 PPFINLIGELFVIMASFSWSNLTIIMTgfnMLITALYSLY 409
Cdd:COG0651  384 PPLSGFVSKWLLLQAALEAGAWLLAAV---LLLSSLLTLA 420
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-454 1.23e-32

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 129.83  E-value: 1.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  58 SDSLSSPLLMLTVWLLPLMIMASQhhltkESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWG 137
Cdd:PRK02546  85 ADGLSMPLILLTGFITTLAVLAAW-----PVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWG 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 138 NQtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMsGLWSSNLLWLACIMAFMVKMPLYGLHLWLP 217
Cdd:PRK02546 160 GK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDF-GLGFQLLCYAGLLIAYGVKLPIVPLHTWLP 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 218 KAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYP-FIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK02546 238 DAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 297 VIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLI 376
Cdd:PRK02546 318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFV 397
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 377 GEL--FVIMASFSWSNLT-----IIMTGFNMLITALYSLYMLTMTQRGK----FTYHiHNIKPSYTRENTLMSMHMLPLI 445
Cdd:PRK02546 398 AELmvFVGFATSDAYTLPfrvvvVFLAAVGVILTPIYLLSMLREIFFGPenkeLVSH-EKLVDAEPREVFIIACLLVPII 476

                 ....*....
gi 108742916 446 MLTFNPKII 454
Cdd:PRK02546 477 GIGLYPKLV 485
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-418 4.97e-32

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 127.91  E-value: 4.97e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQhhltkESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:PRK07363  78 DGLSLPLLVLNSLLTWIAIYSIG-----ENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSgLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK07363 153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLS-LNTQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPfiMLCLWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363 231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQA---FLPLMATWWLLANLTNLALPPF 372
Cdd:PRK07363 309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNpirGLPLTSALLVLAGMASAGIPGL 388
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 108742916 373 INLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQRGK 418
Cdd:PRK07363 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGR 434
ndhD CHL00011
NADH dehydrogenase subunit 4
59-457 9.12e-32

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 126.98  E-value: 9.12e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHhLTKESlmrKKLYLSMLTflqMF--LIMTFTATELILFYILFESTLIPTLVIITRW 136
Cdd:CHL00011  83 DGLSIGPILLTGFITTLATLAAWP-VTRNS---RLFYFLMLA---MYsgQIGLFSSRDLLLFFIMWELELIPVYLLLSMW 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 137 GNQtERLNAGLYFLFYTLIGSLPLLVALIYVqnSLGSLNYLVMNMWSqdmsglwSSN---------LLWLACIMAFMVKM 207
Cdd:CHL00011 156 GGK-KRLYSATKFILYTAGGSIFLLIGVLGM--GLYGSNEPTLNFET-------LANqsypvaleiLFYIGFLIAYAVKL 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 208 PLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLC-LWGMIMTSSICLRQTDLKSLI 286
Cdd:CHL00011 226 PIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVgAIQIIYAASTSLGQRNLKKRI 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIhsRTMLLAR--GLQAFLPLMATWWLLANL 364
Cdd:CHL00011 306 AYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSM 383
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 365 TNLALPPFINLIGELFV---IMASFSWSNLTIIMTGFNMLI-TALYSLYMLTMTQRGKFTYHIHNIKPSY-----TRENT 435
Cdd:CHL00011 384 ASLALPGMSGFVAELIVffgIITSQKYLLMPKILITFVMAIgMILTPIYLLSMLRQMFYGYKLFNVPNSYffdsgPRELF 463
                        410       420
                 ....*....|....*....|..
gi 108742916 436 LMSMHMLPLIMLTFNPKIIMGL 457
Cdd:CHL00011 464 ISICILLPVIGIGIYPDFVLSL 485
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
56-406 9.89e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 97.64  E-value: 9.89e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  56 FFSDSLSSPLLMLT--VWLLPLMIMASQHHltkeslMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVII 133
Cdd:PRK08375  73 LRADSLSALFLLVTsiLAIAALLYAIGYGE------HRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALV 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 134 TRWGNQtERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYlvmnmwsQDMSGLWSSNLLWLA----CIMAFMVKMPL 209
Cdd:PRK08375 147 AMGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNM-------ADLAGALAENPTVVTafgfVLLALALKAAV 218
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTM----ILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSL 285
Cdd:PRK08375 219 FPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRV 298
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 286 IAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLT 365
Cdd:PRK08375 299 LAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLS 378
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 108742916 366 NLALPPFINLIGELFVIMASFS---WSNLTIIMTGfnMLITALY 406
Cdd:PRK08375 379 LIGVPPTSGFVSKWYLVVGAVEagqWLVLAVLLAS--SLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-379 2.78e-21

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 96.19  E-value: 2.78e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLmrKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGN 138
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHESG--PEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 139 QTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLN-----YLVMNMWSQDMSGL-----WSSNLLWLACIMAFMVKMP 208
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNmadlsAKIRGLSFPLTGGLagnppLALGVALALALWAFTIKAA 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 209 LYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRL-------TMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTD 281
Cdd:PRK12667 239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 282 LKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLL 361
Cdd:PRK12667 319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                        330
                 ....*....|....*...
gi 108742916 362 ANLTNLALPPFINLIGEL 379
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKL 416
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 2.27e-20

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 86.04  E-value: 2.27e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916    1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQ-TENYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNpSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 108742916   80 SQHHLTKESLMRKKLYLSMLTFLQMFLIMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
47-394 4.01e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 86.13  E-value: 4.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  47 NYSNNFSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRkkLYLSMLtflqmFLIMTFTATELILFYILFESTL 126
Cdd:MTH00062  32 VVNNVFNGLFIFDSLSFYLILLVLFLGLYSQVMFYNLLSGVSRFF--LFLSLI-----FSILCFCVNNSLLFWFFYELSI 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 127 IPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYlvmNMWSQDMSGLWSSNLLwlaCIMAFMVK 206
Cdd:MTH00062 105 IPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNF---SDWGSDDSVSLIVYYV---LSFMFITK 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 207 MPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTkIMAYPFIMLCLWGMIMTSSicLRQTDLKSLI 286
Cdd:MTH00062 179 VPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGS-FLGYLFLCCLFSVFFLITA--CSELDGKRWL 255
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 287 AYSSVSHMaLVIVAILMQTPWSFMGATALM-IAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLT 365
Cdd:MTH00062 256 AFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLS 334
                        330       340
                 ....*....|....*....|....*....
gi 108742916 366 NLALPPFINLIGELFVIMASFSWSNLTII 394
Cdd:MTH00062 335 LCSFPPTIQFFCEVFLVSSSFGVLVYLLF 363
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-447 4.03e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 83.44  E-value: 4.03e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLC--LWGMIMTSSICLRQTDLK 283
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIfgLLSVLVAAFFLLRQRDIK 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 284 SLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLAN 363
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 364 LTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYMltMTQRGKFTYHIHNIKPSYTRENTLMSMHMLP 443
Cdd:PRK06458 387 LAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVR--RVAGMVFGEPPEAVNRGDLGWLTTSPMFVHL 464

                 ....
gi 108742916 444 LIML 447
Cdd:PRK06458 465 VLVL 468
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
51-327 1.99e-16

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 81.58  E-value: 1.99e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  51 NFSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLqmflIMTFTATELILFYILFESTLIPTL 130
Cdd:PRK08668  60 GFKLTFTLTHLSWFFAMISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGV----LGVFLANDLLTLYIFWEIMTFSSF 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 131 VIITRwGNQTERLNAGLYFLFyTLIGSLPLLVALIYVQNSLGSLNYL-VMNMWSQDMSGLWSsnLLWLACIMAFMV-KMP 208
Cdd:PRK08668 136 MMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFAdISQGLINDTSTGFA--LIVFLFLLAFGVaKAG 211
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 209 LYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLrLTMILNPTTKIMA------------YPFIMLCLWGMIMTSSIC 276
Cdd:PRK08668 212 IFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTKLFSefgtyrgvplfnYILAWLGNISIIVGTLMA 290
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 108742916 277 LRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK08668 291 ILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
80-327 1.00e-14

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 75.95  E-value: 1.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  80 SQHHLTKESLmrkKLYLSMLTFLQMFLIMTFTATELILFYILFE-STLIPTLVIITRwgNQTERLNAGLYFLFYTLIGSL 158
Cdd:PRK08676  92 SNGELDPENL---KVFYLGFNLLLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFIASTAMI 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 159 PLLVALIYV------QNSLGSLNYLVMnmwsQDMSGLWSSNLLWLACIM---AFMVKMPLYGLHLWLPKAHVEAPIAGSM 229
Cdd:PRK08676 167 FAFIGLIFLfsltrqALGTGTLNWTEL----AAHASLLSPSVLGASFLFifiGFLAKSGLVPFHTWLPAAYAKAPSVVSA 242
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 230 VLAAVLLKLGGYGMLRLTMILNpTTKIMAYPFIMLCLWGMIMTSSIC---LRQTDLKSLIAYSSVSHMALVIVAILMQTP 306
Cdd:PRK08676 243 LLSGTVLNIGIYGILRLSALLR-QSGAAEQFSNVLIGLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTP 321
                        250       260
                 ....*....|....*....|.
gi 108742916 307 WSFMGATALMIAHGLTSSMLF 327
Cdd:PRK08676 322 LALFWMLFHMLAHSLVKSGLF 342
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
100-339 4.17e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 74.22  E-value: 4.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 100 TFLQMFLIM-------TFTATELILFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLIGSLPLL--VALIYVQNS 170
Cdd:PRK07234  94 RFFYAQLLIlhgsvnaAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLigAVLVYQANG 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 171 lgslnylvmnmwSQDMSGLWSSNLLWLACI-MAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMI 249
Cdd:PRK07234 173 ------------TFAFSGLATADPEAFALIaLGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALD 240
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 250 LNPTTKIMAYPFIMLCLWGmimtSSICLRQTDLKSLIAYSSVSHMALVIVAILMqtpwsfmgATALMIAHGLTSSMLFCL 329
Cdd:PRK07234 241 VPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLC 308
                        250
                 ....*....|
gi 108742916 330 ANSNYERIHS 339
Cdd:PRK07234 309 AGALPSRNFT 318
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
100-384 4.63e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 71.15  E-value: 4.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 100 TFLQMFLI------MTFTATELILFYILFESTLIPTLVIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGS 173
Cdd:PRK12665 112 IFLPTYLIlvagvsNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGT 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 174 LNYLVMNMWSQDM-SGLwsSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP 252
Cdd:PRK12665 191 LNMADLAVRLDELpSGT--RTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFP 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 253 TTKIMAypFIMLC-LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFcLAN 331
Cdd:PRK12665 269 GGGLDT--LLMVVaLLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF-LVV 345
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 108742916 332 SNYERiHSRTMLLAR--GLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMA 384
Cdd:PRK12665 346 GLIER-QAGSSSLRRlgGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEA 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-386 1.46e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 69.76  E-value: 1.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  52 FSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMF-LIMTFTATELILFYILFESTLIPTL 130
Cdd:PRK08667  69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 131 VIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSglwssnLLWLACIMAFMVKMPLY 210
Cdd:PRK08667 149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLR-LTMILNPTtkiMAYPFIMLCLwGMI---MTSSICLRQTDLKSLI 286
Cdd:PRK08667 223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRfLMDVLSPE---LWWGVLILLA-GSIsalLGVIYALKEHDLKGLL 298
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 287 AYSSVSHMALVIVAILMQTPWSFMGATALM-----------IAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355
Cdd:PRK08667 299 AYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYT 378
                        330       340       350
                 ....*....|....*....|....*....|.
gi 108742916 356 ATWWLLANLTNLALPPFINLIGELFVIMASF 386
Cdd:PRK08667 379 SALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK12650 PRK12650
DUF4040 family protein;
95-330 4.92e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 68.15  E-value: 4.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  95 YLSMLTFLQMFLIMTFtATELILFYILFESTLIPTLVIITRWGNQTErlNAGLYFLFYTLIGSLPLLVALIYVQNSLGSL 174
Cdd:PRK12650 113 YLLMTAFMAAMLLLVL-ADDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTT 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 175 NY---LVMNMWSQDmSGLWSSNLLWLAciMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILN 251
Cdd:PRK12650 190 SLsgiLHSDVWAEK-PGLTTVVAVLIA--VAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFH 266
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 108742916 252 PTTkIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12650 267 DVA-VWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
104-394 1.72e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 65.94  E-value: 1.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 104 MFLIMTFTATELIL------FYILFESTLIpTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYL 177
Cdd:PRK08377 113 LFLLLMLGATGMIAtgdifnLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 178 VMNMWSQDMSGLWSSNLLWLaCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMIL---NPTT 254
Cdd:PRK08377 192 HIAQLAGTIDPTVAQVGLAL-LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMqnaNGWS 270
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 255 KIMAYPFIMLCLwGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNY 334
Cdd:PRK08377 271 SVLKLVIIMATL-TVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVG 349
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 335 ERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTII 394
Cdd:PRK08377 350 ITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPV 409
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
95-431 3.95e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 65.17  E-value: 3.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  95 YLSMLTFLQMFLIMtftATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSL 174
Cdd:COG1009  116 YLLLFMAAMLGLVL---SDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTL 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 175 NYLVMNMWSQDmsgLWSSNLLWLACIMAF---MVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMIL 250
Cdd:COG1009  193 NFSELLAAAPT---ILSSPLLTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSPLF 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 251 NPTTkiMAYPFIMLC-LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQtpwSFMGATALMIAHGLTSSMLFCL 329
Cdd:COG1009  269 ALSP--VWLTVVAIIgAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLG 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 330 ANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNML---ITALY 406
Cdd:COG1009  344 AGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFY 423
                        330       340
                 ....*....|....*....|....*....
gi 108742916 407 SLYMLTMT----QRGKFTYHIHNIKPSYT 431
Cdd:COG1009  424 SFRLFFLVffgkPRPKTPKHPHESPWLMT 452
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
91-401 2.01e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 62.68  E-value: 2.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  91 RKKLYLSMLTFLQMFLIMTFTATELILFyILFESTLIPTLVIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALIYVQNS 170
Cdd:PRK06525 112 TGRYYAFLLLFIGAMAGLVYSSTLLGLL-LFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQ 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 171 LGSLNYLVMNMWSQDMSglwssNLLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMI 249
Cdd:PRK06525 190 TGTFALSALSGLHGSLK-----YLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQS 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 250 LNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI---LMQTPWSFMGATALMIAHGLTSSML 326
Cdd:PRK06525 264 MGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLslaILGSRLALEGSIAYIFNHAFAKSLF 343
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 108742916 327 FCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNML 401
Cdd:PRK06525 344 FLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
145-342 3.65e-10

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 62.21  E-value: 3.65e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 145 AGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYlvMNMWSQDMSGLWSSNLLWLAcIMAFMVKMPLYGLHLWLPKAHVEAP 224
Cdd:PRK06521 165 AGFLYLLMAHAGALAILLAFGLLARESGSYDF--AAMRAAHLSPFWASLVFLLA-LFGFGAKAGLVPLHVWLPRAHPAAP 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 225 IAGSMVLAAVLLKLGGYGMLRLTM-ILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVA--- 300
Cdd:PRK06521 242 SHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGlgl 321
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 108742916 301 --ILMQTPWSFMGATALMIA------HGLTSSMLFCLANSNYERIHSRTM 342
Cdd:PRK06521 322 amVFIAYGMPLLAALALTAAlyhllnHALFKSLLFLGAGAVLHATGTRDM 371
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-409 5.24e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 61.50  E-value: 5.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  52 FSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESlmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLV 131
Cdd:PRK07691  69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIER--ERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYV 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 132 IITRWGNQTErLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNylvMNMWSQDMSGLWSS-----NLLWLACIMAFMVK 206
Cdd:PRK07691 147 LIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLN---MADISVKIAELSAGqtgliTVVAILFLFVFATK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 207 MPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLR-LTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSL 285
Cdd:PRK07691 223 AGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARtFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKI 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 286 IAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLT 365
Cdd:PRK07691 303 IIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALS 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 108742916 366 NLALPPFINLIGELFVIMASFSWSNLTIimtGFNMLITALYSLY 409
Cdd:PRK07691 383 LAGIPPLSGFYGKFFIVEGTFEAGFYVS---GIIVLLSSLLVLY 423
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-411 9.86e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 60.60  E-value: 9.86e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  51 NFSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTL 130
Cdd:PRK06589  74 NYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTA 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 131 VIITrWGNQTERLNAGLYFLFYTLIGSLPL-LVALIYVQNSLGSLNYLVMNMWSQDMSglwssnLLWLACIMAFMVKMPL 209
Cdd:PRK06589 154 FLIG-HTRNNISLSGGYKYLKILMISALLLfLPAVILIYTKTGNLDFVSGGLFSKNQS------IILLLMFIYGIAKTAI 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMI---LNPTTKI--MAYPFIMLCLWGMIMTSSICLRQTDLKS 284
Cdd:PRK06589 227 FPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYifgLSYLQRIfaEFNWLIFIPIVSIFYSSLKALKTDNIKK 306
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 285 LIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANL 364
Cdd:PRK06589 307 ILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSL 386
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 108742916 365 TNLALPPFINLIGELFVIMASFSWSN--LTIIMTGFNMLITALYSLYML 411
Cdd:PRK06589 387 SLIGIPIFSGFISKFLILLAASEQNQpwLSIIVMLVVIASSILSALYLL 435
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
20-412 1.25e-09

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 59.96  E-value: 1.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  20 STMIWINMTSYSLMISLMTL-------PLLNQTENYSNNFSLMFFSDSLSSpLLMLTVWLLPLMIMASQHHLTKESLMRK 92
Cdd:PRK12663  30 QRYLAIGTLTILTLISLALLiyvqrhgPITLDFGGWLPPFGIQFTGDSLSA-LMVTTASFVATAIMAYGFGDIEHSGRRY 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  93 KLYlSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLG 172
Cdd:PRK12663 109 GFP-PFILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFG 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 173 SLNYLVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHlWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLR-LTMILN 251
Cdd:PRK12663 187 TLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRvFTLLFP 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 252 PTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLAN 331
Cdd:PRK12663 266 QERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAG 345
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 332 SNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTgfnMLITALYSLYML 411
Cdd:PRK12663 346 SLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLAL---MLITSLITMYSL 422

                 .
gi 108742916 412 T 412
Cdd:PRK12663 423 F 423
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-405 1.37e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 60.32  E-value: 1.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 115 LILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLnylvmnmwsqDMSGLWSSN- 193
Cdd:PRK12647 117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTY----------SLSELLASGd 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 194 --------LLWLACIM--AFmVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMILNPTtkimAYPFI 262
Cdd:PRK12647 187 virehplyLAILLLVLggAF-TKSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLARLNPVLGGT----PLWQT 260
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 263 MLCLWG---MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHS 339
Cdd:PRK12647 261 ILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGT 340
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108742916 340 RTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITAL 405
Cdd:PRK12647 341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAVLGNAL 406
PRK12646 PRK12646
DUF4040 family protein;
86-419 2.09e-08

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 56.69  E-value: 2.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  86 KESLMRKKLYLSMLTFLQMFLImtfTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI 165
Cdd:PRK12646 106 KDNLPRFYFYLTLFMFSMIGIV---LSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFI 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 166 --YVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLaCIMAFmVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYG 242
Cdd:PRK12646 183 mlYIMTGTNNITEILGQADHIKNHGLFIPMIFMF-LLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFL 259
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 243 MLRLTMILNpTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI-----LMQTPWSFMGATALMI 317
Cdd:PRK12646 260 LFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVgigggYAQHQQDAIASIYVFV 338
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 318 A---------HGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALpPFIN--LIGELF------ 380
Cdd:PRK12646 339 LfaalfhlmnHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGV-PFLNgfLSKEMFldaltq 417
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 108742916 381 -VIMASFSWSnLTIIMTGFNM---LITALYSLYMLTMTQRGKF 419
Cdd:PRK12646 418 tGQLSQFSLI-SMIIIVFIGViasIFTFTYALYMVKEVFWGKY 459
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
99-327 4.34e-08

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 55.29  E-value: 4.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  99 LTFLQMFLIMTFTATELILFYilfestliptlviitrwgNQTERLNAGL-YFLFYTLIGSLpLLVALIYVQNSLGSLnyL 177
Cdd:PRK12668 116 LTLFVFWELMAFTSTFLVWAR------------------GTKAAVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSF--A 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 178 VMNMWSQDMSGLWssnllwLACImAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRL---TMILNPTT 254
Cdd:PRK12668 175 FGAIAGLGGTAAW------LILI-GFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAfpgTELLIYIG 247
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 108742916 255 KIMA-YPFIMLCLwgmimtssiclrQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12668 248 AAMAvYGVFFALL------------ENDLRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
75-342 7.90e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.33  E-value: 7.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  75 LMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTftATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTL 154
Cdd:PRK08376 105 LAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAI--TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGS 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 155 IGSLPLL--VALIYVQNSLGSLNYLVMNMwSQDMSGLWSSNLLWLacIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLa 232
Cdd:PRK08376 183 LASSMVLlgIALLYGQYGTLNMAYLAVKM-SENPTVVAKIALALF--IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML- 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 233 aVLLKLGG-YGMLRLTM-ILNPTTKIMAYPFIMLCL--WGMIMTSSICLRQTDLKSLIAYSSVS---HMAL---VIVAIL 302
Cdd:PRK08376 259 -LVIKQAGlYALARVLFsIYGPAINLATVGWVIIILgcLTMFVGVAMAVVQKDVKRLLAYHSVSqigYMLLglgVGLAAL 337
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 108742916 303 MQTPWSFMGATAL------MIAHGLTSSMLFCLANSNYERIHSRTM 342
Cdd:PRK08376 338 GDPAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNL 383
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
155-386 1.41e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 53.68  E-value: 1.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 155 IGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSglwSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234
Cdd:PRK08042 145 LGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLP---LGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 235 LLKLGGYGMLRLTMIlnpTTKIMAYPFIMLCLWGMImTSSI----CLRQTDLKSLIAYSSVSHMALV-------IVAILM 303
Cdd:PRK08042 222 VMKIGLLGILTLSLL---GGNAPLWWGVALLVLGMI-TAFVgglyALMEHNIQRLLAYHTLENIGIIllglgagVTGIAL 297
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 304 QTP----WSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGEl 379
Cdd:PRK08042 298 EQPaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGE- 376

                 ....*..
gi 108742916 380 FVIMASF 386
Cdd:PRK08042 377 WVIYQSF 383
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
111-327 6.97e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 6.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 111 TATELILFYILFESTLIPTLVIItrwGNQTERLN---AGLYFLFYTLIGSLPLLVALIYVQNSLGSlnYLVMNMWSQDMS 187
Cdd:PRK12644 124 TSDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGT--YRLSELLADPPT 198
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 188 GLWSSnlLWLACIMAFMV-KMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMILNpTTKIMAYPFIMLC 265
Cdd:PRK12644 199 GPAVS--VAVVLILVGALsKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFA-DVPVWRPTVLVLG 274
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 108742916 266 LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12644 275 LATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
52-323 1.07e-06

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 50.89  E-value: 1.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  52 FSLMFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSML--TFLQMFLIMtftATELILFYILFESTLIPT 129
Cdd:COG1007   62 FGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRGLLRGEFYALLLfaTLGMMLMAS---ANDLLTLFLGLELLSLSL 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 130 LVIITRWGNQTERLNAGL-YFLFYTLIGSLPLL-VALIYVqnSLGSLNYLVMNMWSQDMSGlwSSNLLWLACIM---AFM 204
Cdd:COG1007  139 YVLVAFRRDDRRSSEAALkYFLLGALSSGFLLYgISLLYG--ATGSLNLAGIAAALAAGGA--NSPLLLLGLVLvlaGLA 214
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLlKLGGYGML-RLTMILNPT-TKIMAYPFIMLCLWGMIMTSSICLRQTDL 282
Cdd:COG1007  215 FKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAALlRLLVEAFPGlAADWQLLLAVLAVLSMTVGNLAALAQTNV 293
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 108742916 283 KSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTS 323
Cdd:COG1007  294 KRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
119-332 1.36e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.50  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 119 YILFESTLIPTLVIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLA 198
Cdd:PRK12662 136 YVFLEISSISSYVLVAM-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLF 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 199 CIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMI-----LNPTTKIMAYPFIMLCLWGMIMTS 273
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGS 294
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742916 274 SICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANS 332
Cdd:PRK12662 295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGS 353
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
85-295 2.04e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 50.21  E-value: 2.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  85 TKESLMRKKLYLsmLTFLQMFLIMTFTATELILFyILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL 164
Cdd:PRK12649 106 HKEDLPRYYQYL--LLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGF 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 165 IYVQNSLGSLNYLVMNMWSQDMSGLWSSNLLWLACIMAFM---VKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGG 240
Cdd:PRK12649 183 LLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGV 261
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 108742916 241 YGMLRLTMILNPTTKImaypFIMLCLWGMI---MTSSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK12649 262 YLVARIHPIFSGTEAW----FILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQLA 315
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-301 4.27e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 49.19  E-value: 4.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKL-YLSMLTFLQMFLImtfTATELILFYILFESTLIPTLVIITRWG 137
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLcYLSLFTFLMMVLV---TSDNYLQLFIGWEGVGVCSYLLVAFWT 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 138 NQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNMWSQdMSGLWSSN-------------------LLWLA 198
Cdd:MTH00032 156 TRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNGGSV-GSGIMDRGyygggayesplapfaiigiLLLIG 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 199 CIMafmvKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTmilnPTTKIMAYPFIMLCLWGMI---MTSSI 275
Cdd:MTH00032 235 CIG----KSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATV 306
                        250       260
                 ....*....|....*....|....*.
gi 108742916 276 CLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:MTH00032 307 GLVQNDLKKVIAYSTCSQLGYMVLII 332
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
95-300 4.96e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 48.92  E-value: 4.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  95 YLSMLTFLQMFLImtfTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSL 174
Cdd:MTH00020 116 YLSLFTFLMVVLV---TSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSL 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 175 NYL-VMNMWSqdmsgLWSSNLLWLACIMAF---MVKMPLYGLHLWLPKAH-----VEAPI-AGSMVLAAVLLklggygML 244
Cdd:MTH00020 193 DFSsVFNMVV-----SAPSSDITLICLFLFigaVGKSAQLGLHTWLPDAMegptpVSALIhAATMVTAGVFL------LI 261
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 108742916 245 RLTMILNPTTKIMAYPFIMLCLwGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVA 300
Cdd:MTH00020 262 RSSPLFEQAPLALIIVTIVGSL-TVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVA 316
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-330 2.09e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 46.77  E-value: 2.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 137 GNQTERLNAGLYFLFYTLIGSLPLL--VALIYvqNSLGSLNylvMNMWSQDMSGLWSSN--LLWLACIM---AFMVKMPL 209
Cdd:PRK12666 152 GSGRARVRAGLHYVAINLVASSLFLigVGLIY--GVTGTLN---MADLAQRIAQLPAADraLLEAGAALllvVFLIKAAM 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 210 YGLHLWLPKAHVEA--PIAGsmvLAAVLLKLGGYGMLRL-TMILNPTTKIMAYPFIMLCLWGMIMTSSI----CLRQTDL 282
Cdd:PRK12666 227 WPLNFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRL 303
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 108742916 283 KSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12666 304 RRLAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
23-307 1.05e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 44.58  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  23 IWINMTSYSLMISLmtlplLNQTENYSNNFSLMFFSDSLSspLLMLTVWLL-PLMIMASQHHLTKESLMRKKLYLSMLTF 101
Cdd:MTH00208  75 IWILLGCPNINISL-----SNWLSNTLFNFSLSFIFDFYF--ILFFSVALFvTWSIIEFSHYYMSNDPNKNAFFRLLIIF 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 102 LQMFLIMTFTaTELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLVMNM 181
Cdd:MTH00208 148 LLNMLILTSS-NNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNSWNLNEILS 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 182 WSQDMSglWSSNLLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygMLRLTMILNPTT 254
Cdd:MTH00208 227 LNNSNS--FLINILLFGILLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGVFL------LIRTSPLISNSP 297
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 108742916 255 KIMAYPFIMLCLWGmIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPW 307
Cdd:MTH00208 298 WFLSLCLILGSLTA-LFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPN 349
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
95-323 1.76e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 43.66  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  95 YLSMLTFLQMFLIMTftATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLL--VALIYVqnSLG 172
Cdd:PRK05777 107 LLVLFALLGMMVMVS--ANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygMSLLYG--ATG 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 173 SLNYLVMNMWSQDMSGlwSSNLLWLACIM---AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLlKLGGYGM-LR-LT 247
Cdd:PRK05777 183 SLSFAGIAKALADGSG--NSLLLLFGLVFllvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVlLRlLV 259
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108742916 248 MILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTS 323
Cdd:PRK05777 260 VAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
187-419 4.02e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 4.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 187 SGLWSSNLLWLACIMAF---MVKMPLYGLHLWLPKAhVEAPI-------AGSMVLAAVLLklggygMLRLTMILNPttki 256
Cdd:PRK07376 218 SGAVSGWLALLLCILVFlgpMAKSAQFPLHVWLPDA-MEGPTpisalihAATMVAAGVFL------VARMYPVFEQ---- 286
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 257 maYPFIMLCL-WGMIMTS----SICLRQTDLKSLIAYSSVSHMALVIVAilmqtpwsfMGATAL------MIAHGLTSSM 325
Cdd:PRK07376 287 --FPAVMTVIaWTGAITAflgaSIALTQNDIKKGLAYSTISQLGYMVMA---------MGCGAYsaglfhLMTHAYFKAM 355
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 326 LFCLANS---------NYERIHSRTMLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFSwSNLTIIMT 396
Cdd:PRK07376 356 LFLGSGSvihgmeevvGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFE-ANPALWFV 434
                        250       260
                 ....*....|....*....|....
gi 108742916 397 GF-NMLITALYSLYMLTMTQRGKF 419
Cdd:PRK07376 435 GFlTAGMTAFYMFRMYFLTFEGEF 458
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
7-301 8.16e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 41.70  E-value: 8.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   7 PTIMLFPVVWYSNSTMIWINMTSYSLMISLMTLPLLNQTENYSNNFSlmFFSdslsspLLMLTVWLLPLMIMASQHHltk 86
Cdd:PRK06459   1 TLLYILPVFLISILLSIFNKKASYILTMISSIILLITSIYEYNGVLS--FFS------IISTIVWILASLYSIEYDH--- 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  87 eslmRKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTErlnAGLYFLFYTLIGSLPLLVALIY 166
Cdd:PRK06459  70 ----YGKWLSSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAW 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 167 VQNSLGSLNYLVMnmwsqdmsglwSSNLLWLACIMAFMVKMPLYGLHL--WLPKAHVEAPIAGSMVLAAVLLKLGGYGML 244
Cdd:PRK06459 143 AFIISGTTNFSYL-----------PSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGIL 211
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 108742916 245 RLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTD-LKSLIAYSSVSHMALVIVAI 301
Cdd:PRK06459 212 KMTILTQTIPIGYFGLTILAIGAFSILFGALYAYVSEnVKGLLAFSTIENNGAILVAL 269
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
91-327 1.16e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 41.48  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  91 RKKLYLSMLTFLQMFLIMTFTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNS 170
Cdd:MTH00211 108 NINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLN 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 171 LGSLNYlvmnmwSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygM 243
Cdd:MTH00211 188 LNSWEI------SQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSA-MEGPTPVSallhsstMVVAGVFL------L 254
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 244 LRLTMILNPTTKIMAypfIMLCLWG--MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI-LMQTPWSFMgataLMIAHG 320
Cdd:MTH00211 255 IRLSPLFQNNQLILG---AVLLLGAltMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFL----HICTHA 327

                 ....*..
gi 108742916 321 LTSSMLF 327
Cdd:MTH00211 328 FFKAMLF 334
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
1-327 2.43e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 40.15  E-value: 2.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916   1 MLKIIMPTIMLFPVVWYSNSTMIWINMTSYSLMISL--MTLPLLNQTENYSNNFSLMF---FSDSLSSPLLMLTVWLLP- 74
Cdd:MTH00004  13 LLILLTPILLPLLSKNLKNSPTTIKTTVKLAFLISLipLTLFLNSGTESITTNWPWIFtttFNIPISFKLDQYSLMFLPi 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  75 -LMI-----------MASQHHLTKeslmrKKLYLsmLTFLQMFLIMTfTATELILFYILFESTLIPTLVIITRWGNQTER 142
Cdd:MTH00004  93 aLFVtwsilefstwyMASDPHITK-----FFKYL--LIFLIAMLILI-TANNMFQLFIGWEGVGIMSFLLIGWWSGRAEA 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 143 LNAGLYFLFYTLIGSLPLLValiyvqnslgSLNYLVMNMWSQDMSGLWSSN----LLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:MTH00004 165 NTAALQAIIYNRIGDIGLIL----------SMAWLAMTLNTWEIQQLFSPTqtptLPLLGLILAATGKSAQFGLHPWLPA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 219 AhVEAPIAGS-------MVLAAVLLklggygMLRLTMILNPTTKIMaypfiMLCLWGMIMTS---SIC-LRQTDLKSLIA 287
Cdd:MTH00004 235 A-MEGPTPVSallhsstMVVAGIFL------LIRTHPLLQNNQTAL-----TICLCLGALTTlfaATCaLTQNDIKKIIA 302
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 108742916 288 YSSVSHMALVIVAI-LMQTPWSFMGatalMIAHGLTSSMLF 327
Cdd:MTH00004 303 FSTSSQLGLMMVTIgLNQPQLAFLH----ISTHAFFKAMLF 339
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
112-384 2.70e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 40.01  E-value: 2.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 112 ATELILFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLIGSLPLL-VALIYVQNSLGSLNYLVMNMWSQDMSGL 189
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSYINLVLNSGQSFSS 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 190 WSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPiagsMVLAAVLLKLGGYGMLRLTMILNPTTKImaypFIMLCLWGM 269
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAP----TKTTALLAIVPKLGIFSILVSIGLNVNI----LLIGGLFSL 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 270 IMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFC--LANSNYerihsRTMLLA-R 346
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSiiLALNVY-----KNLIIEfS 238
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 108742916 347 GLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMA 384
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLS 276
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
262-410 8.20e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 8.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 262 IMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRT 341
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108742916 342 MLLARGLQAFLPLMATWWLLANLTNLALPPFINLIGELFVIMASFS--WSNLTIIMT-----GFNMLITALYSLYM 410
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQanMPELAIIMIivsigTFVSMMKAFYLIYL 425
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
98-301 9.97e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.35  E-value: 9.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916  98 MLTFLQMFLIMTfTATELILFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYvqnslgslnyL 177
Cdd:MTH00066 119 LLIFLIAMMILV-TANNLFQLFIGWEGVGIMSFLLIGWWHARADANTAALQAVLYNRVGDIGLILSMAW----------L 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742916 178 VMNMWSQDMSGLWSSN----LLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygMLRL 246
Cdd:MTH00066 188 AMNTNSWELQQIFLLNdnstLPLLGLILAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGIFL------LIRF 260
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 108742916 247 -TMILNPTTKIMaypfIMLCLWGM--IMTSSICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:MTH00066 261 hPLLENNQTALT----ICLCLGALttLFTAACALTQNDIKKIVAFSTSSQLGLMMVTI 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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