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Conserved domains on  [gi|108708904|gb|ABF96699|]
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AC transposase, putative, expressed [Oryza sativa Japonica Group]

Protein Classification

DUF4413 domain-containing protein( domain architecture ID 10627365)

DUF4413 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4413 pfam14372
Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer ...
 286-388 7.47e-28

Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.


:

Pssm-ID: 433913  Cd Length: 100  Bit Score: 105.79  E-value: 7.47e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108708904  286 SGTSYPTVTRYFHEFWKVKVMILNESNNEDDLVASLVSKMDTKFQKYWDLQFLQIWVPVIFDPRFKLKFLEFRLKAGFGD 365
Cdd:pfam14372   1 SGSKYPTANLYFHEVWKIQLLLNEWSLSDDPFISSMAKKMQEKFDKYWRECNLVLAIAVVLDPRFKMKLVEFTFNKIYGE 80

                          90       100
                  ....*....|....*....|...
gi 108708904  366 KAtgpNGYLPRIKRTVRTWFAEY 388
Cdd:pfam14372  81 DA---KKYIKKVRDGLRELFNEY 100
 
Name Accession Description Interval E-value
DUF4413 pfam14372
Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer ...
 286-388 7.47e-28

Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.


Pssm-ID: 433913  Cd Length: 100  Bit Score: 105.79  E-value: 7.47e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108708904  286 SGTSYPTVTRYFHEFWKVKVMILNESNNEDDLVASLVSKMDTKFQKYWDLQFLQIWVPVIFDPRFKLKFLEFRLKAGFGD 365
Cdd:pfam14372   1 SGSKYPTANLYFHEVWKIQLLLNEWSLSDDPFISSMAKKMQEKFDKYWRECNLVLAIAVVLDPRFKMKLVEFTFNKIYGE 80

                          90       100
                  ....*....|....*....|...
gi 108708904  366 KAtgpNGYLPRIKRTVRTWFAEY 388
Cdd:pfam14372  81 DA---KKYIKKVRDGLRELFNEY 100
 
Name Accession Description Interval E-value
DUF4413 pfam14372
Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer ...
 286-388 7.47e-28

Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.


Pssm-ID: 433913  Cd Length: 100  Bit Score: 105.79  E-value: 7.47e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108708904  286 SGTSYPTVTRYFHEFWKVKVMILNESNNEDDLVASLVSKMDTKFQKYWDLQFLQIWVPVIFDPRFKLKFLEFRLKAGFGD 365
Cdd:pfam14372   1 SGSKYPTANLYFHEVWKIQLLLNEWSLSDDPFISSMAKKMQEKFDKYWRECNLVLAIAVVLDPRFKMKLVEFTFNKIYGE 80

                          90       100
                  ....*....|....*....|...
gi 108708904  366 KAtgpNGYLPRIKRTVRTWFAEY 388
Cdd:pfam14372  81 DA---KKYIKKVRDGLRELFNEY 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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