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Conserved domains on  [gi|1085344498|gb|OGV17203|]
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MAG: hypothetical protein A2237_19150 [Stygiobacter sp. RIFOXYA2_FULL_38_8]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-141 3.52e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.13  E-value: 3.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  24 RSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNA 103
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD---DAEALNNLGLA 85

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1085344498 104 LLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-141 3.52e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.13  E-value: 3.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  24 RSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNA 103
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD---DAEALNNLGLA 85

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1085344498 104 LLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 61-127 9.01e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 42.32  E-value: 9.01e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1085344498  61 FNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPND 127
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 61-126 2.35e-04

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 39.57  E-value: 2.35e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1085344498  61 FNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPN 126
Cdd:TIGR02795   4 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPK 69
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 57-86 1.26e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 1.26e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1085344498   57 FQGHFNLGDSYYKQGRYDEAIQSYKNSIGL 86
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
ycf3 CHL00033
photosystem I assembly protein Ycf3
 66-139 2.81e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 37.29  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  66 SYYK-------QGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPndletkyNLSYAL 138
Cdd:CHL00033   37 TYYRdgmsaqsEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-------FLPQAL 109


                  .
gi 1085344498 139 N 139
Cdd:CHL00033  110 N 110
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 26-135 3.87e-03

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 37.88  E-value: 3.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  26 LNNDGVDLYNEKKFADA------EVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIgltddKEKKS--KAF 97
Cdd:NF033758   49 LFEDALKAFDAQKKAKAfdypslERKFKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAAL-----KKKPTlrQAS 123

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1085344498  98 HNIGnalLKQQKYEDGIGA---YKNALKTNPNDLETKYNLS 135
Cdd:NF033758  124 ENLA---VMAQNAGDVAGAvalYQDVLKRYPDDASSRARLA 161
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-141 3.52e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.13  E-value: 3.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  24 RSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNA 103
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD---DAEALNNLGLA 85

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1085344498 104 LLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 25-138 7.19e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 84.66  E-value: 7.19e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  25 SLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNAL 104
Cdd:COG3914   114 ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPD---NAEALNNLGNAL 190

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1085344498 105 LKQQKYEDGIGAYKNALKTNPNDLETKYNLSYAL 138
Cdd:COG3914   191 QDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-141 2.06e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.82  E-value: 2.06e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  24 RSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKekkSKAFHNIGNA 103
Cdd:COG0457    43 EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD---AEALYNLGLA 119

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1085344498 104 LLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG0457   120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 33-141 4.40e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 4.40e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  33 LYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQKYED 112
Cdd:COG3914    88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD---FAEAYLNLGEALRRLGRLEE 164

                          90       100
                  ....*....|....*....|....*....
gi 1085344498 113 GIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG3914   165 AIAALRRALELDPDNAEALNNLGNALQDL 193
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 20-141 2.10e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.22  E-value: 2.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  20 AQSKRSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLtDDKEkkSKAFHN 99
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDE--PEARLN 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1085344498 100 IGNALLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 41-138 6.77e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 68.88  E-value: 6.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  41 DAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQKYEDGIGAYKNA 120
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD---NADALLDLAEALLAAGDTEEAEELLERA 77

                          90
                  ....*....|....*...
gi 1085344498 121 LKTNPNDLETKYNLSYAL 138
Cdd:COG4235    78 LALDPDNPEALYLLGLAA 95
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
50-141 1.92e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 1.92e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  50 LEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPNDLE 129
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD---DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90
                  ....*....|..
gi 1085344498 130 TKYNLSYALNML 141
Cdd:COG0457    78 ALNNLGLALQAL 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-134 2.62e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 2.62e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  30 GVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEkksKAFHNIGNALLKQQK 109
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA---EALLELAQDYLKAGL 91

                          90       100
                  ....*....|....*....|....*
gi 1085344498 110 YEDGIGAYKNALKTNPNDLETKYNL 134
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLL 116
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 30-127 1.48e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.21  E-value: 1.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  30 GVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQK 109
Cdd:COG4783    45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE---HPEAYLRLARAYRALGR 121

                          90
                  ....*....|....*...
gi 1085344498 110 YEDGIGAYKNALKTNPND 127
Cdd:COG4783   122 PDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-141 2.78e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.18  E-value: 2.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  24 RSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLtddKEKKSKAFHNIGNA 103
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADALYNLGIA 153

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1085344498 104 LLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
26-134 2.92e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.08  E-value: 2.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  26 LNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEkksKAFHNIGNALL 105
Cdd:COG4785    76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA---YAYLNRGIALY 152

                          90       100
                  ....*....|....*....|....*....
gi 1085344498 106 KQQKYEDGIGAYKNALKTNPNDLETKYNL 134
Cdd:COG4785   153 YLGRYELAIADLEKALELDPNDPERALWL 181
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 31-131 4.80e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.08  E-value: 4.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  31 VDLYNEKKFADAEVKFKKSLEKDPQ---LFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQ 107
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80

                          90       100
                  ....*....|....*....|....
gi 1085344498 108 QKYEDGIGAYKNALKTNPNDLETK 131
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAAK 104
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 33-125 6.88e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.82  E-value: 6.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  33 LYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQKYED 112
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD---NPNAYSNLAALLLSLGQDDE 140

                          90
                  ....*....|...
gi 1085344498 113 GIGAYKNALKTNP 125
Cdd:COG5010   141 AKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-129 2.48e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.56  E-value: 2.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  33 LYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQsYKNSIGLtddKEKKSKAFHNIGNALLKQQKYED 112
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEALLNLAELLLELGDYDE 77

                          90
                  ....*....|....*..
gi 1085344498 113 GIGAYKNALKTNPNDLE 129
Cdd:COG3063    78 ALAYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 36-138 1.30e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 1.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  36 EKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKkskAFHNIGNALLKQQKYEDGIG 115
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR---ALLLLAELYLEQGDYEEAIA 199

                          90       100
                  ....*....|....*....|...
gi 1085344498 116 AYKNALKTNPNDLETKYNLSYAL 138
Cdd:COG2956   200 ALERALEQDPDYLPALPRLAELY 222
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 50-141 1.98e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 1.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  50 LEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPNDLE 129
Cdd:COG3914    71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD---NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                          90
                  ....*....|..
gi 1085344498 130 TKYNLSYALNML 141
Cdd:COG3914   148 AYLNLGEALRRL 159
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 33-127 2.07e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.86  E-value: 2.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  33 LYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEkksKAFHNIGNALLKQQKYED 112
Cdd:COG4235    27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP---EALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*
gi 1085344498 113 GIGAYKNALKTNPND 127
Cdd:COG4235   104 AIAAWQKLLALLPAD 118
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
16-138 3.68e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.92  E-value: 3.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  16 GSVSAQSKRSLNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLtddKEKKSK 95
Cdd:COG4785    32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL---DPDLAE 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1085344498  96 AFHNIGNALLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYAL 138
Cdd:COG4785   109 AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 67-141 4.59e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 4.59e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1085344498  67 YYKQGRYDEAIQSYKNSIGLTDDKekkSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYALNML 141
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNN---PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-129 5.76e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 5.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  30 GVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDkekKSKAFHNIGNALLKQQK 109
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD---YLPALPRLAELYEKLGD 227

                          90       100
                  ....*....|....*....|
gi 1085344498 110 YEDGIGAYKNALKTNPNDLE 129
Cdd:COG2956   228 PEEALELLRKALELDPSDDL 247
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
67-138 2.09e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 2.09e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1085344498  67 YYKQGRYDEAIQSYKNSIGLtddKEKKSKAFHNIGNALLKQQKYEDGIgAYKNALKTNPNDLETKYNLSYAL 138
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL---DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELL 69
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 61-127 9.01e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 42.32  E-value: 9.01e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1085344498  61 FNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPND 127
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 26-86 6.23e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 6.23e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1085344498  26 LNNDGVDLYNEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGL 86
Cdd:COG5010    91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
TPR_11 pfam13414
TPR repeat;
64-108 7.39e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.99  E-value: 7.39e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1085344498  64 GDSYYKQGRYDEAIQSYKNSIGLTDDKEkksKAFHNIGNALLKQQ 108
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNP---EAYYNLGLAYYKLG 42
TPR_12 pfam13424
Tetratricopeptide repeat;
62-122 1.39e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.29  E-value: 1.39e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1085344498  62 NLGDSYYKQGRYDEAIQSYKNSIGLT-----DDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALK 122
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIArrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 61-126 2.35e-04

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 39.57  E-value: 2.35e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1085344498  61 FNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPN 126
Cdd:TIGR02795   4 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPK 69
TPR_7 pfam13176
Tetratricopeptide repeat;
60-94 2.86e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 37.13  E-value: 2.86e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1085344498  60 HFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEKKS 94
Cdd:pfam13176   2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 1-81 3.16e-04

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 40.61  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498   1 MKKLMCALFVSLTFLG----------SVSAQSKRSLNNDGVDLYNEKKFADAEVKFKKSLEKDPqlF-----QGHFNLGD 65
Cdd:TIGR03302   1 LLLLILLLALLLLLAGcsskkkkeadPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP--FspyaeQAQLDLAY 78

                          90
                  ....*....|....*.
gi 1085344498  66 SYYKQGRYDEAIQSYK 81
Cdd:TIGR03302  79 AYYKSGDYAEAIAAAD 94
TPR_17 pfam13431
Tetratricopeptide repeat;
46-78 3.43e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.14  E-value: 3.43e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1085344498  46 FKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQ 78
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_1 pfam00515
Tetratricopeptide repeat;
94-127 4.00e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.00e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1085344498  94 SKAFHNIGNALLKQQKYEDGIGAYKNALKTNPND 127
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1-82 4.08e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 40.25  E-value: 4.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498   1 MKKLMCALFVSLTFLG------SVSAQSKRSLNNDGVDLYNEKKFADAEVKFKKSLEK---DPQLFQGHFNLGDSYYKQG 71
Cdd:COG4105     4 LLKLLLLLLLALLLAGcssfkkALKSWDAEELYEEAKEALEKGDYEKAIKLFEELEPRypgSPYAEQAQLMLAYAYYKQG 83

                          90
                  ....*....|.
gi 1085344498  72 RYDEAIQSYKN 82
Cdd:COG4105    84 DYEEAIAAADR 94
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 30-81 4.10e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.70  E-value: 4.10e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1085344498  30 GVDLYNEKKFADAEVKFKKSLEKD---PQLFQGHFNLGDSYYKQGRYDEAIQSYK 81
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYR 58
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-134 5.10e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 5.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  33 LYNEKKFADAEVKFKKSLEKD-PQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIgltdDKEKKSKAFHNIGNALLKQQKYE 111
Cdd:TIGR02917 678 LLLAAKRTESAKKIAKSLQKQhPKAALGFELEGDLYLRQKDYPAAIQAYRKAL----KRAPSSQNAIKLHRALLASGNTA 753

                          90       100
                  ....*....|....*....|...
gi 1085344498 112 DGIGAYKNALKTNPNDLETKYNL 134
Cdd:TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTAL 776
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 59-134 7.25e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 7.25e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1085344498  59 GHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKEkksKAFHNIGNALLKQQKYEDGIGAYKNALKTNPNDLETKYNL 134
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETV---EAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
TPR_1 pfam00515
Tetratricopeptide repeat;
60-84 1.25e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 1.25e-03
                          10        20
                  ....*....|....*....|....*
gi 1085344498  60 HFNLGDSYYKQGRYDEAIQSYKNSI 84
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKAL 28
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 57-86 1.26e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 1.26e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1085344498   57 FQGHFNLGDSYYKQGRYDEAIQSYKNSIGL 86
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 57-84 1.34e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 1.34e-03
                          10        20
                  ....*....|....*....|....*...
gi 1085344498  57 FQGHFNLGDSYYKQGRYDEAIQSYKNSI 84
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKAL 28
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 35-135 1.58e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  35 NEKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSigLTDDKEKKsKAFHNIGNALLKQQKYEDGI 114
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV--LTIDPKNL-RAILALAGLYLRTGNEEEAV 553

                          90       100
                  ....*....|....*....|.
gi 1085344498 115 GAYKNALKTNPNDLETKYNLS 135
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALA 574
TPR_12 pfam13424
Tetratricopeptide repeat;
24-81 2.28e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 2.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1085344498  24 RSLNNDGVDLYNEKKFADAEVKFKKSLE--------KDPQLFQGHFNLGDSYYKQGRYDEAIQSYK 81
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLE 69
ycf3 CHL00033
photosystem I assembly protein Ycf3
 66-139 2.81e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 37.29  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  66 SYYK-------QGRYDEAIQSYKNSIGLTDDKEKKSKAFHNIGNALLKQQKYEDGIGAYKNALKTNPndletkyNLSYAL 138
Cdd:CHL00033   37 TYYRdgmsaqsEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-------FLPQAL 109


                  .
gi 1085344498 139 N 139
Cdd:CHL00033  110 N 110
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 94-127 3.17e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 3.17e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1085344498   94 SKAFHNIGNALLKQQKYEDGIGAYKNALKTNPND 127
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
101-138 3.75e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 3.75e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1085344498 101 GNALLKQQKYEDGIGAYKNALKTNPNDLETKYNLSYAL 138
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAY 38
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 26-135 3.87e-03

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 37.88  E-value: 3.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  26 LNNDGVDLYNEKKFADA------EVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIgltddKEKKS--KAF 97
Cdd:NF033758   49 LFEDALKAFDAQKKAKAfdypslERKFKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAAL-----KKKPTlrQAS 123

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1085344498  98 HNIGnalLKQQKYEDGIGA---YKNALKTNPNDLETKYNLS 135
Cdd:NF033758  124 ENLA---VMAQNAGDVAGAvalYQDVLKRYPDDASSRARLA 161
TPR_19 pfam14559
Tetratricopeptide repeat;
36-78 7.16e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 34.10  E-value: 7.16e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1085344498  36 EKKFADAEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQ 78
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 30-81 7.98e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 34.97  E-value: 7.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1085344498  30 GVDLYNEKKFADAEVKFKKSLEKDPQ---LFQGHFNLGDSYYKQGRYDEAIQSYK 81
Cdd:COG1729    37 GEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARATLE 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-134 8.05e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 36.99  E-value: 8.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344498  42 AEVKFKKSLEKDPQLFQGHFNLGDSYYKQGRYDEAIQSYKNSIGLTDDKekkSKAFHNIGNALLKQQKYEDGIGAYKNAL 121
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKAL 492

                          90
                  ....*....|...
gi 1085344498 122 KTNPNDLETKYNL 134
Cdd:TIGR02917 493 SIEPDFFPAAANL 505
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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