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Conserved domains on  [gi|1084999842|gb|OGS10171|]
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hypothetical protein A3J70_12750 [Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-193 6.70e-69

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 211.11  E-value: 6.70e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842   1 MAMTKTKLSRALEQTILHLILGLGLVIAVAPFFWMLSTSFKSGGGIFKYPPQILPHNPTLQWYFQLFRDVDFFLHFKNSL 80
Cdd:COG0395     1 MSATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  81 IVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPTAVG--VFGI 158
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFglPFGI 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1084999842 159 FLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:COG0395   161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLP 195
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-193 6.70e-69

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 211.11  E-value: 6.70e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842   1 MAMTKTKLSRALEQTILHLILGLGLVIAVAPFFWMLSTSFKSGGGIFKYPPQILPHNPTLQWYFQLFRDVDFFLHFKNSL 80
Cdd:COG0395     1 MSATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  81 IVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPTAVG--VFGI 158
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFglPFGI 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1084999842 159 FLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:COG0395   161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLP 195
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
72-193 7.38e-23

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 92.49  E-value: 7.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  72 FFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPT 151
Cdd:PRK10973   73 FGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPL 152

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1084999842 152 AVGVFGIFLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:PRK10973  153 MASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLP 194
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-194 3.14e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 3.14e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  76 FKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPTAVGV 155
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1084999842 156 ------FGIFLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:cd06261    81 llliapFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPL 125
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 94-194 1.54e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  94 SSLAGYAFAKLRFAGRDRIFTLLMATLM-IPGQITMIPVFLFLKQLGLLNTYWGLILPTAVGVFG--IFLIRQFMLTVPD 170
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQaLPSFVLAILLVVIAILSILGHGILPAIILALLGWAGyaRLIRRAALRSLPS 80

                          90       100
                  ....*....|....*....|....
gi 1084999842 171 DLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPN 104
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 28-193 3.81e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 37.35  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  28 AVAPFFWMLSTSFKSGGGIFkyppqILPHNptlqwYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFA 107
Cdd:TIGR03262  18 LLLPLLALLTKSVYDSDGDF-----IGLAN-----FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 108 GRDRIFTLLMATLMIPgqiTMIP----VFLFLKQ------LGLLNTY--WGLILPTAVGVF-GIFLIRQFMLTVPD-DLI 173
Cdd:TIGR03262  88 GKGAFRLVALLPLLAP---SLLPaislIYLFGNQgllkglLGGFSIYgfWGIVIGEVFYTFpHALMILVTALSLADgRLY 164

                         170       180
                  ....*....|....*....|
gi 1084999842 174 EASRIDGCSEFRIYWSVVLP 193
Cdd:TIGR03262 165 EAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-193 6.70e-69

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 211.11  E-value: 6.70e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842   1 MAMTKTKLSRALEQTILHLILGLGLVIAVAPFFWMLSTSFKSGGGIFKYPPQILPHNPTLQWYFQLFRDVDFFLHFKNSL 80
Cdd:COG0395     1 MSATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  81 IVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPTAVG--VFGI 158
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFglPFGI 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1084999842 159 FLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:COG0395   161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLP 195
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 3-193 8.60e-49

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 159.93  E-value: 8.60e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842   3 MTKTKLSRALEQTILHLILGLGLVIAVAPFFWMLSTSFKSGGGIfkYPPQILPHNPTLQWYFQLFRDVDFFLHFKNSLIV 82
Cdd:COG3833     4 RKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSL--YSSSLIPENFTLENYKKLFTETPFLRWFLNSLIV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  83 AVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLIL---PTAVGvFGIF 159
Cdd:COG3833    82 AVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILvylGGAIP-FNTW 160

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1084999842 160 LIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:COG3833   161 LMKGYFDTIPKELDEAAKIDGASHFQIFFRIILP 194
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
72-193 7.38e-23

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 92.49  E-value: 7.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  72 FFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPT 151
Cdd:PRK10973   73 FGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPL 152

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1084999842 152 AVGVFGIFLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:PRK10973  153 MASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLP 194
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 29-194 7.47e-23

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 92.10  E-value: 7.47e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  29 VAPFFWMLSTSFKSGGGifkypPQILPHNPTLQWYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFAG 108
Cdd:COG1177    21 YLPILVLVLYSFNDSWF-----LTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRG 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 109 RDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPTAVGV--FGIFLIRQFMLTVPDDLIEASRIDGCSEFRI 186
Cdd:COG1177    96 RRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTlpFVVLVVLARLQGFDPSLEEAARDLGASPWQT 175


                  ....*...
gi 1084999842 187 YWSVVLPQ 194
Cdd:COG1177   176 FRRVTLPL 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 76-194 3.14e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 3.14e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  76 FKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYWGLILPTAVGV 155
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1084999842 156 ------FGIFLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:cd06261    81 llliapFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPL 125
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 26-194 3.04e-12

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 63.63  E-value: 3.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  26 VIAVAPFFWMLSTSFKSGGGIFKYPPQilphnPTLQWYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLR 105
Cdd:COG1176    24 LFFVLPLLLLLVYSFTTRDPYGGVVPG-----FTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 106 FAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNT---YWGLI------LPTAVGV----------FGIFLIRQFML 166
Cdd:COG1176    99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSlllALGLIdeplrlLYTEFAVviglvyvylpFMVLPLYAALE 178

                         170       180
                  ....*....|....*....|....*...
gi 1084999842 167 TVPDDLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:COG1176   179 KIDPSLLEAARDLGASPWQTFRRVILPL 206
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
26-194 1.92e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 61.72  E-value: 1.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  26 VIAVAPFFWMLSTSFKSGggifkyppqilphnptLQWYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLR 105
Cdd:COG1178    22 LLVLLPLLALLLRAFTDG----------------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 106 FAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGLLNTYW----GLILPTAVGVFGI-------------FLIRQFMLTV 168
Cdd:COG1178    86 FPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLralfGLEPPDIYGLGGIilvlvlfnypyvyLLLRAALRSI 165

                         170       180
                  ....*....|....*....|....*.
gi 1084999842 169 PDDLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:COG1178   166 DASLEEAARSLGASPWRAFRRVTLPL 191
malG PRK10998
maltose ABC transporter permease MalG;
31-193 4.13e-11

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 60.49  E-value: 4.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  31 PFFWMLSTSFKSGGgifKYPPQILPHNPTLQ-WYFQLFRDVD------------FFLHFKNSLIVAVTTTVFQLFLSSLA 97
Cdd:PRK10998   30 PLLMVIAISLREGN---FATGSLIPEQISWEhWKLALGFSVEhadgrvtpppfpVLLWLWNSVKVAGITAIGIVALSTTC 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  98 GYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQLGL------LNTYWGLILPTAVGV-FGIFLIRQFMLTVPD 170
Cdd:PRK10998  107 AYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFAYLGGIaLHVWTIKGYFETIDS 186

                         170       180
                  ....*....|....*....|...
gi 1084999842 171 DLIEASRIDGCSEFRIYWSVVLP 193
Cdd:PRK10998  187 SLEEAAALDGATPWQAFRLVLLP 209
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
26-193 3.73e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 58.25  E-value: 3.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  26 VIAVAPFFWMLSTSFKSGggifkyppqiLPHNPTLQWYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLR 105
Cdd:COG1178   300 LGLLLPLLALLLWSLTKA----------LDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRR 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 106 FAGRDRIFTLLMATLMIPG---QITMIPVFLFLKQLGLLNTYWGLILPTAVGV--FGIFLIRQFMLTVPDDLIEASRIDG 180
Cdd:COG1178   370 GRLARLLDRLAMLPYAVPGivlGLGLLLLFNRPLPLLLYGTLAILVLAYVVRFlpFALRSLEAALAQIDPSLEEAARSLG 449

                         170
                  ....*....|...
gi 1084999842 181 CSEFRIYWSVVLP 193
Cdd:COG1178   450 ASPLRTLRRVTLP 462
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
26-194 1.28e-08

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 53.21  E-value: 1.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  26 VIAVAPFFWMLSTSFKSGGGIFKYPPQIlphnpTLQWYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKlR 105
Cdd:COG1175    33 VFVLYPLLYTLYLSFTDWNLLGPPPEFV-----GLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-K 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 106 FAGRDRIFTLLMATLMIPGQIT-MIPVFLFLKQLGLLNTYWGLI--------------LPTAVGV-------FGIFLIRQ 163
Cdd:COG1175   107 LRGRGFFRTLFFLPWVISPVVVaLIWKWLFNPDYGLLNALLGALglepinwlgdpslaLPAVIIVtvwkgtgFNMLIFLA 186

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1084999842 164 FMLTVPDDLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:COG1175   187 GLQSIPRELYEAARIDGASPWQRFRRITLPL 217
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 94-194 1.54e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  94 SSLAGYAFAKLRFAGRDRIFTLLMATLM-IPGQITMIPVFLFLKQLGLLNTYWGLILPTAVGVFG--IFLIRQFMLTVPD 170
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQaLPSFVLAILLVVIAILSILGHGILPAIILALLGWAGyaRLIRRAALRSLPS 80

                          90       100
                  ....*....|....*....|....
gi 1084999842 171 DLIEASRIDGCSEFRIYWSVVLPQ 194
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPN 104
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 59-193 1.26e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 44.20  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  59 TLQWYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFAGRDRIFTLLMATLMIPGQITMIPVFLFLKQL 138
Cdd:PRK09500   42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1084999842 139 GLLNTYWGLILP--TAVGVFGIFLIRQFMLTVPDDLIEASRIDGCSEFRIYWSVVLP 193
Cdd:PRK09500  122 GIQLGFWSLLFAhiTFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILP 178
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 28-193 3.81e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 37.35  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842  28 AVAPFFWMLSTSFKSGGGIFkyppqILPHNptlqwYFQLFRDVDFFLHFKNSLIVAVTTTVFQLFLSSLAGYAFAKLRFA 107
Cdd:TIGR03262  18 LLLPLLALLTKSVYDSDGDF-----IGLAN-----FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084999842 108 GRDRIFTLLMATLMIPgqiTMIP----VFLFLKQ------LGLLNTY--WGLILPTAVGVF-GIFLIRQFMLTVPD-DLI 173
Cdd:TIGR03262  88 GKGAFRLVALLPLLAP---SLLPaislIYLFGNQgllkglLGGFSIYgfWGIVIGEVFYTFpHALMILVTALSLADgRLY 164

                         170       180
                  ....*....|....*....|
gi 1084999842 174 EASRIDGCSEFRIYWSVVLP 193
Cdd:TIGR03262 165 EAARAMGASPWRTFFTVTLP 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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