|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
82-597 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 709.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 82 LTEDMITEAIAAEVGLPYKKIDPLKINADVATSfIPRPFAQKHLIVPIEEKDKVVTVALADPYNLDAIEGLQSTGKVKLK 161
Cdd:COG2804 48 VTEELLAEALAEQLGLPFVDLDELEIDPEVLEL-LPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVE 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 162 LVLASKSDILMIIREFYGFRYSVGAAEKEVRKDteLSNLEQYVKlkgAVELDATDQHVINAVEYLLHYAYEQRASDIHIE 241
Cdd:COG2804 127 PVVATESDIERALDRLYGSESSIEELLEELAED--LTSEEEDLE---DLLEEADDAPVVRLVNAILEDAIKEGASDIHIE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 242 PKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDGRIKTSFKDKEVELRVSTLPTAFGEKVVIR 321
Cdd:COG2804 202 PYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLR 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 322 IFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQV 401
Cdd:COG2804 282 ILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQV 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 402 GVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTII 481
Cdd:COG2804 362 QVNPKIGLTFASALRSILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 482 GIAAQRLVRKICKSCSKERLLTADEVEYLRIRKD--REYKVCYGEGCNECRGTGYRGRVAIYELLEFTDKIRAFVTASTD 559
Cdd:COG2804 442 GVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEelAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGAS 521
|
490 500 510
....*....|....*....|....*....|....*...
gi 1084827067 560 LAAVGKAAREQGMSSLRESALRKMLGGITTYEEVISVT 597
Cdd:COG2804 522 AAELREAARKEGMRTLREDGLEKVLQGITTLEEVLRVT 559
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
116-597 |
3.37e-176 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 508.07 E-value: 3.37e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 116 IPRPFAQKHLIVPIEEKDKVVTVALADPYNLDAIEGLQSTGKVKLKLVLASKSDILMIIREFYGfRYSVGAAE--KEVRK 193
Cdd:TIGR02533 4 LPIGFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYA-RTGSAAAQivEEIEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 194 DTELSNLEQYVKLKGAVELDATDQHVINAVEYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVS 273
Cdd:TIGR02533 83 EDDLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 274 RIKMLSRMDIAEKRKPQDGRIKTSFKDKEVELRVSTLPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTF 353
Cdd:TIGR02533 163 RVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPH 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRD 433
Cdd:TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 434 AETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKICKSCSKERLLTADEVEYLRIR 513
Cdd:TIGR02533 323 LETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGIS 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 514 KDREYKVCYGEGCNECRGTGYRGRVAIYELLEFTDKIRAFVTASTDLAAVGKAAREQGMSSLRESALRKMLGGITTYEEV 593
Cdd:TIGR02533 403 PEGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEV 482
|
....
gi 1084827067 594 ISVT 597
Cdd:TIGR02533 483 LRVT 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
213-597 |
4.70e-130 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 388.90 E-value: 4.70e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 213 DATDQHVINAVEYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDG 292
Cdd:PRK10436 78 QEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 293 RIKTSFKDKEVELRVSTLPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYS 372
Cdd:PRK10436 158 QFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 373 ALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLS 452
Cdd:PRK10436 238 ALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLS 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 453 TLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKICKSCSKERLLTADEVEYLRIRKDREYKVCygeGCNECRgT 532
Cdd:PRK10436 318 TLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEPIHLPPNIWPGPLPHWQAV---GCEHCY-H 393
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1084827067 533 GYRGRVAIYELLEFTDKIRAFVTASTDLAAVGKAAREQGMSSLRESALRKMLGGITTYEEVISVT 597
Cdd:PRK10436 394 GYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
230-491 |
2.65e-113 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 338.88 E-value: 2.65e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 230 AYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDGRIKTSFKDKEVELRVST 309
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGVRVRVST 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 310 LPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIED 389
Cdd:pfam00437 87 LPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVED 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 390 PIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDL 469
Cdd:pfam00437 167 PVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDM 246
|
250 260
....*....|....*....|..
gi 1084827067 470 GIPPFLINSTIIGIAAQRLVRK 491
Cdd:pfam00437 247 GVPPFELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
224-489 |
8.39e-99 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 301.67 E-value: 8.39e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 224 EYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDGRIKTSFKDKEV 303
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 304 ELRVSTLPTAFG-EKVVIRIFDPElllQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTpEV 382
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQL---EQIKPQLFFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLAL-NK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 383 NIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTS 462
Cdd:NF041000 157 QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGV 236
|
250 260
....*....|....*....|....*..
gi 1084827067 463 ITRLMDLGIPPFLINSTIIGIAAQRLV 489
Cdd:NF041000 237 IYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
343-492 |
8.46e-85 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 261.27 E-value: 8.46e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 343 EVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQD 422
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 423 PDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKI 492
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGRT 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
354-431 |
1.16e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTI-------EDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDII 426
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
|
....*
gi 1084827067 427 MVGEI 431
Cdd:smart00382 83 ILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
82-597 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 709.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 82 LTEDMITEAIAAEVGLPYKKIDPLKINADVATSfIPRPFAQKHLIVPIEEKDKVVTVALADPYNLDAIEGLQSTGKVKLK 161
Cdd:COG2804 48 VTEELLAEALAEQLGLPFVDLDELEIDPEVLEL-LPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVE 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 162 LVLASKSDILMIIREFYGFRYSVGAAEKEVRKDteLSNLEQYVKlkgAVELDATDQHVINAVEYLLHYAYEQRASDIHIE 241
Cdd:COG2804 127 PVVATESDIERALDRLYGSESSIEELLEELAED--LTSEEEDLE---DLLEEADDAPVVRLVNAILEDAIKEGASDIHIE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 242 PKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDGRIKTSFKDKEVELRVSTLPTAFGEKVVIR 321
Cdd:COG2804 202 PYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLR 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 322 IFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQV 401
Cdd:COG2804 282 ILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQV 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 402 GVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTII 481
Cdd:COG2804 362 QVNPKIGLTFASALRSILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 482 GIAAQRLVRKICKSCSKERLLTADEVEYLRIRKD--REYKVCYGEGCNECRGTGYRGRVAIYELLEFTDKIRAFVTASTD 559
Cdd:COG2804 442 GVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEelAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGAS 521
|
490 500 510
....*....|....*....|....*....|....*...
gi 1084827067 560 LAAVGKAAREQGMSSLRESALRKMLGGITTYEEVISVT 597
Cdd:COG2804 522 AAELREAARKEGMRTLREDGLEKVLQGITTLEEVLRVT 559
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
116-597 |
3.37e-176 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 508.07 E-value: 3.37e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 116 IPRPFAQKHLIVPIEEKDKVVTVALADPYNLDAIEGLQSTGKVKLKLVLASKSDILMIIREFYGfRYSVGAAE--KEVRK 193
Cdd:TIGR02533 4 LPIGFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYA-RTGSAAAQivEEIEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 194 DTELSNLEQYVKLKGAVELDATDQHVINAVEYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVS 273
Cdd:TIGR02533 83 EDDLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 274 RIKMLSRMDIAEKRKPQDGRIKTSFKDKEVELRVSTLPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTF 353
Cdd:TIGR02533 163 RVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPH 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRD 433
Cdd:TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 434 AETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKICKSCSKERLLTADEVEYLRIR 513
Cdd:TIGR02533 323 LETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGIS 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 514 KDREYKVCYGEGCNECRGTGYRGRVAIYELLEFTDKIRAFVTASTDLAAVGKAAREQGMSSLRESALRKMLGGITTYEEV 593
Cdd:TIGR02533 403 PEGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEV 482
|
....
gi 1084827067 594 ISVT 597
Cdd:TIGR02533 483 LRVT 486
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
41-597 |
2.07e-165 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 483.36 E-value: 2.07e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 41 LKKAQEQSYTSKRRGAVGEFIspaEVIAALNFsvpgttgrpLTEDMITEAIAAEVGLPYKKIDPLKINAdVATSFIPRPF 120
Cdd:TIGR02538 12 LTETQAQAALEEAQASGQPLV---QYLIQNGL---------LDPKQLAEFLSREFGVPLLDLNAFDPDA-LPVQLVSEEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 121 AQKHLIVPIEEKDKVVTVALADPYNLDAIEGLQSTGKVKLKLVLASKSDILMIIREFYGFRYSVG-AAEKEVRKDTELSN 199
Cdd:TIGR02538 79 IQKHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAkELGDEDIGDLEELD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 200 LEQYV-KLKGAVELDAT--DQHVINAVEYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIK 276
Cdd:TIGR02538 159 VDAIDdEGPDDIEQDAVddDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIK 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 277 MLSRMDIAEKRKPQDGRIKTSF-KDKEVELRVSTLPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGI 355
Cdd:TIGR02538 239 VMSRLDIAEKRIPQDGRIKLKLsKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGM 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAE 435
Cdd:TIGR02538 319 VLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 436 TANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKICKSCSKERLLTADEVEYLRIRK- 514
Cdd:TIGR02538 399 TAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQe 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 515 DREYKVCYG-EGCNECRGTGYRGRVAIYELLEFTDKIRAFVTASTDLAAVGKAAREQGMSSLRESALRKMLGGITTYEEV 593
Cdd:TIGR02538 479 DLADLKLYGpVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEV 558
|
....
gi 1084827067 594 ISVT 597
Cdd:TIGR02538 559 LRVT 562
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
213-597 |
4.70e-130 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 388.90 E-value: 4.70e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 213 DATDQHVINAVEYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDG 292
Cdd:PRK10436 78 QEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 293 RIKTSFKDKEVELRVSTLPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYS 372
Cdd:PRK10436 158 QFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 373 ALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLS 452
Cdd:PRK10436 238 ALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLS 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 453 TLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKICKSCSKERLLTADEVEYLRIRKDREYKVCygeGCNECRgT 532
Cdd:PRK10436 318 TLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEPIHLPPNIWPGPLPHWQAV---GCEHCY-H 393
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1084827067 533 GYRGRVAIYELLEFTDKIRAFVTASTDLAAVGKAAREQGMSSLRESALRKMLGGITTYEEVISVT 597
Cdd:PRK10436 394 GYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
230-491 |
2.65e-113 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 338.88 E-value: 2.65e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 230 AYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDGRIKTSFKDKEVELRVST 309
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGVRVRVST 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 310 LPTAFGEKVVIRIFDPELLLQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIED 389
Cdd:pfam00437 87 LPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVED 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 390 PIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDL 469
Cdd:pfam00437 167 PVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDM 246
|
250 260
....*....|....*....|..
gi 1084827067 470 GIPPFLINSTIIGIAAQRLVRK 491
Cdd:pfam00437 247 GVPPFELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
224-489 |
8.39e-99 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 301.67 E-value: 8.39e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 224 EYLLHYAYEQRASDIHIEPKREKTVVRLRIDGVLHYIHTIPKPVHPSVVSRIKMLSRMDIAEKRKPQDGRIKTSFKDKEV 303
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 304 ELRVSTLPTAFG-EKVVIRIFDPElllQEVATLGFTPKEFEVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTpEV 382
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQL---EQIKPQLFFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLAL-NK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 383 NIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTS 462
Cdd:NF041000 157 QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGV 236
|
250 260
....*....|....*....|....*..
gi 1084827067 463 ITRLMDLGIPPFLINSTIIGIAAQRLV 489
Cdd:NF041000 237 IYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
343-492 |
8.46e-85 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 261.27 E-value: 8.46e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 343 EVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQD 422
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 423 PDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLGIPPFLINSTIIGIAAQRLVRKI 492
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGRT 150
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
223-595 |
6.36e-62 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 208.02 E-value: 6.36e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 223 VEYLLHYAYEQRASDIHIEPKRektVVRLRIDGVLHYIHTipKPVHPSVVSRIkMLSRMDIAEKRKPQDGR-IKTSFkdk 301
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTVGS---PPMLRIDGELVPLDD--PPLTPEDLEAL-LKEILTEEQRERLEEEGeLDFSY--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 302 EVE----LRVSTLPTAFGEKVVIRIFDPELLlqEVATLGFTPkefeVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTL 377
Cdd:COG2805 76 SLPglgrFRVNIFRQRGGVAAVLRLIPSEIP--TLEELGLPP----VLKELAELPRGLVLVTGPTGSGKSTTLAAMIDYI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 378 -STPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMD---FASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLST 453
Cdd:COG2805 150 nETRAKHIITIEDPIEFVHKHKKSLINQREVGRDtpsFANALRAALREDPDVILVGEMRDLETIEAALTAAETGHLVFAT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 454 LHTNDAPTSITRLMDLgIPP-------FLINSTIIGIAAQRLVRKIckscskerlltadeveylrirkdreykvcygEGc 526
Cdd:COG2805 230 LHTNSAAQTIDRIIDV-FPPeeqaqirSQLAESLRGVISQRLLPRA-------------------------------DG- 276
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1084827067 527 necrgtgyRGRVAIYELLEFTDKIRAFV--TASTDLAAVGKAAREQGMSSLRESALRKMLGGITTYEEVIS 595
Cdd:COG2805 277 --------GGRVAAREILVNTPAVRNLIreGKTHQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALA 339
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
226-491 |
1.00e-50 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 178.28 E-value: 1.00e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 226 LLHYAYEQRASDIHIepkREKTVVRLRIDGVLHYIhTIPKPVHPSVVSRIK-MLSrmDIAEKRKPQDGRIKTSFKDKEV- 303
Cdd:TIGR01420 5 ILREAVKLGASDIHL---TAGAPPAMRIDGDLVRI-EFEPLTPEDTQKLAReILS--EKQREEFEENGELDFSFSLPGVg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 304 ELRVSTLPTAFGEKVVIRIFDPELLlqEVATLGFTPkefeVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTL-STPEV 382
Cdd:TIGR01420 79 RFRVNAFYQRGGVALVLRLIPSKIP--TFEELGLPP----VLRELAERPRGLILVTGPTGSGKSTTLASMIDYInKNKAY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 383 NIVTIEDPIEMVVEEFNQVGVQSQIGMD---FASSLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDA 459
Cdd:TIGR01420 153 HIITIEDPIEYVHTNKRSLINQREVGEDtlsFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSA 232
|
250 260 270
....*....|....*....|....*....|....*....
gi 1084827067 460 PTSITRLMDLgIPP-------FLINSTIIGIAAQRLVRK 491
Cdd:TIGR01420 233 AQTIERIIDV-FPAeeqeqirTQLAESLVAIISQRLLPK 270
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
343-554 |
4.04e-48 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 167.33 E-value: 4.04e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 343 EVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTL-STPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMD---FASSLRTI 418
Cdd:cd01131 11 PVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYInETRSKHIITIEDPIEFVHKHKKSLINQREVGRDtesFAAALRAA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 419 LRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLgIPP-------FLINSTIIGIAAQRLVRK 491
Cdd:cd01131 91 LREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV-FPPeqqeqvrIQLASSLRGVISQRLLPK 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1084827067 492 IckscskerlltadeveylrirkdreykvcygegcnecrgtGYRGRVAIYELLEFTDKIRAFV 554
Cdd:cd01131 170 K----------------------------------------DGGGRVAAFEILINTPAIRNLI 192
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
354-491 |
7.83e-38 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 137.89 E-value: 7.83e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTL---STPEVNIVTIEDPIEMVVEEFNQVG---VQSQIG---MDFASSLRTILRQDPD 424
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYIlenDPPDRKIITYEDPIEFVYDGIKSKHsiiVQSQIPrhfKSFAKAVREALRRKPS 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084827067 425 IIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLgIPP-------FLINSTIIGIAAQRLVRK 491
Cdd:cd19516 92 LIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISL-FPPeerdaaaYDLLSTLRFIIVQRLVRT 164
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
354-492 |
2.85e-37 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 135.98 E-value: 2.85e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTLSTpEVNIVTIEDPIEMVVEEFNQVGvQSQIG--MDFASSLRTILRQDPDIIMVGEI 431
Cdd:cd19477 11 KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIVFKHHKNYT-QLFFGgnITSADCLKSCLRQRPDRIILGEL 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084827067 432 RDaETANNAVQAALTGH-LVLSTLHTNDAPTSITRLMDLG------------IPPFLINSTIIGIAAQRLVRKI 492
Cdd:cd19477 89 RS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SssnsaarnikfeSLIEGFKDLIDGIVHINHHKQC 161
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
354-492 |
5.53e-32 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 127.14 E-value: 5.53e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALK---TLSTPevNIVTIEDPIEMVVEEFNQVGVQSQIGMD---FASSLRTILRQDPDIIM 427
Cdd:COG5008 124 GLVLFVGATGSGKSTTLAAMIDhrnENSSG--HILTIEDPIEFVHKHKKSIVTQREVGVDtesYEVALKNALRQAPDVIL 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1084827067 428 VGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITR-------------LMDLGippflinSTIIGIAAQRLVRKI 492
Cdd:COG5008 202 IGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRiinffpeerrpqlLMDLS-------LNLRAIVSQRLVPTK 272
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
341-490 |
1.02e-26 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 112.21 E-value: 1.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 341 EFEVFNAFLKKTfGIILVTGPTGSGKTTTLYSALKTL--STPEVNIVTIEDPIEMVVEEFNQV--GVQSQIGMD---FAS 413
Cdd:TIGR02525 138 EPDLFNSLLPAA-GLGLICGETGSGKSTLAASIYQHCgeTYPDRKIVTYEDPIEYILGSPDDLlpPAQSQIGRDvdsFAN 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 414 SLRTILRQDPDIIMVGEIRDAETANNAVQAALTGHLVLSTLHTNDAPTSITRLMDLgIPP-------FLINSTIIGIAAQ 486
Cdd:TIGR02525 217 GIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQM-YPPemreaaaFDLLSILQYIIVQ 295
|
....
gi 1084827067 487 RLVR 490
Cdd:TIGR02525 296 RLLR 299
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
356-471 |
1.13e-21 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 92.60 E-value: 1.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLySALKTLSTPEVNIVTIEDPIEMVVEEFNQV------GVQSQIGMDFASSLRTILRQDPDIIMVG 429
Cdd:cd01130 15 ILISGGTGSGKTTLL-NALLSFIPPDERIVTIEDTRELQLPHPNVVhlltrpGGGEKGEVTMADLLKAALRMRPDRIIVG 93
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1084827067 430 EIRDAEtANNAVQAALTGHL-VLSTLHTNDAPTSITRLMDLGI 471
Cdd:cd01130 94 EVRGGE-AYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVL 135
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
356-478 |
1.53e-19 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 91.68 E-value: 1.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLySALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASS-------LRTILRQDPDIIMV 428
Cdd:COG0630 293 VLVAGGTASGKTTLL-NALLSFIPPDAKIVTIEDTRELNLPHENWISLVTRESFGGEEGdvtmfdlLKAALRQRPDYIVV 371
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1084827067 429 GEIRDAEtANNAVQAALTGHLVLSTLHTNDAPTSITRLMD--LGIPPFLINS 478
Cdd:COG0630 372 GEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPRTLLQA 422
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
82-179 |
2.64e-19 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 83.54 E-value: 2.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 82 LTEDMITEAIAAEVGLPYKKIDPLKINADVaTSFIPRPFAQKHLIVPIEEKDKVVTVALADPYNLDAIEGLQSTGKVKLK 161
Cdd:pfam05157 7 LSEEQLAQALAEQLGLPFVDLEALEIDPEL-LRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLTGKRVE 85
|
90
....*....|....*...
gi 1084827067 162 LVLASKSDILMIIREFYG 179
Cdd:pfam05157 86 PVLATPSDIRRALERLYG 103
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
356-480 |
1.06e-13 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 72.89 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLySALKTLSTPEVNIVTIEDPIEMVVEEFNQVGVQS---------QIGMdfASSLRTILRQDPDII 426
Cdd:COG4962 185 ILVSGGTGSGKTTLL-NALSGFIPPDERIVTIEDAAELQLQHPHVVRLETrppnvegagEVTL--RDLVRNALRMRPDRI 261
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1084827067 427 MVGEIRDAEtANNAVQAALTGHL-VLSTLHTNDAPTSITRLMDLG------IPPFLINSTI 480
Cdd:COG4962 262 IVGEVRGAE-ALDMLQAMNTGHDgSMSTLHANSARDALARLETLAlmagenLPREAVRRQI 321
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
356-469 |
1.73e-12 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 68.61 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTtLYSAL---KTLSTPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIR 432
Cdd:PRK13894 151 ILVIGGTGSGKTT-LVNAIineMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEVR 229
|
90 100 110
....*....|....*....|....*....|....*...
gi 1084827067 433 DAEtANNAVQAALTGHL-VLSTLHTNDAPTSITRLMDL 469
Cdd:PRK13894 230 GPE-ALDLLMAWNTGHEgGAATLHANNAKAGLDRLKSL 266
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
356-466 |
1.88e-12 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 68.53 E-value: 1.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLYSALKTLSTPEvNIVTIEDPIEMVVEEFNQV------GVQSQIGMDFASSLRTILRQDPDIIMVG 429
Cdd:TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVhlfyskGGQGLAKVTPKDLLQSCLRMRPDRIILG 225
|
90 100 110
....*....|....*....|....*....|....*...
gi 1084827067 430 EIRDAEtANNAVQAALTGHL-VLSTLHTNDAPTSITRL 466
Cdd:TIGR02788 226 ELRGDE-AFDFIRAVNTGHPgSITTLHAGSPEEAFEQL 262
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
356-469 |
8.66e-11 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 63.66 E-value: 8.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLYSALKTL--STPEVNIVTIEDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDIIMVGEIRD 433
Cdd:PRK13833 147 IVISGGTGSGKTTLANAVIAEIvaSAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEVRD 226
|
90 100 110
....*....|....*....|....*....|....*..
gi 1084827067 434 AeTANNAVQAALTGHL-VLSTLHTNDAPTSITRLMDL 469
Cdd:PRK13833 227 G-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQL 262
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
356-469 |
3.56e-10 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 61.84 E-value: 3.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTT---TLYSALKtlstPEVNIVTIEDPIEMVVEEFNQVGV---QSQIGMDFASS---LRTILRQDPDII 426
Cdd:PRK13851 165 MLLCGPTGSGKTTmskTLISAIP----PQERLITIEDTLELVIPHENHVRLlysKNGAGLGAVTAehlLQASLRMRPDRI 240
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1084827067 427 MVGEIRDaETANNAVQAALTGHL-VLSTLHTNDAPTSITRLMDL 469
Cdd:PRK13851 241 LLGEMRD-DAAWAYLSEVVSGHPgSISTIHGANPVQGFKKLFSL 283
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
356-483 |
2.18e-08 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 56.30 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 356 ILVTGPTGSGKTTTLYSALKTLSTPEvNIVTIEDPIEMVVEEF-NQV------GVQSQIGMDFASSLRTILRQDPDIIMV 428
Cdd:PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHpNRVhllaskGGQGRAKVTTQDLIEACLRLRPDRIIV 241
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1084827067 429 GEIRDAEtANNAVQAALTGHL-VLSTLHTnDAPTSIT---RLM----DLGIPPFLINSTIIGI 483
Cdd:PRK13900 242 GELRGAE-AFSFLRAINTGHPgSISTLHA-DSPAMAIeqlKLMvmqaGLGMPPDQIKKYILNV 302
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
354-431 |
1.16e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTI-------EDPIEMVVEEFNQVGVQSQIGMDFASSLRTILRQDPDII 426
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
|
....*
gi 1084827067 427 MVGEI 431
Cdd:smart00382 83 ILDEI 87
|
|
| nfrB |
PRK11234 |
phage adsorption protein NrfB; |
60-181 |
1.52e-03 |
|
phage adsorption protein NrfB;
Pssm-ID: 236884 [Multi-domain] Cd Length: 727 Bit Score: 41.65 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 60 FISPAEVIAALNFSVPGTT-GRPL------TEDMITEAIAAEVGLPYKKIDPLKINADVAtSFIPRPFAQKHLIVPIEEK 132
Cdd:PRK11234 493 VITEEQLDTALRNRVRGLRlGQSLlmqgliSAEQLAQALAEQNGVAWESLDPWQIPSSLI-AEMPASVALHYAVLPLREE 571
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1084827067 133 DKVVTVA---LADPYNLDAIEGLQstgKVKLKLVLASKSDILMIIREFYGFR 181
Cdd:PRK11234 572 GDELIVAsedGISPVSLAALTRKL---GRKVRYVIVPRGQVTTGLRHWYARR 620
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
354-390 |
4.03e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 37.71 E-value: 4.03e-03
10 20 30
....*....|....*....|....*....|....*..
gi 1084827067 354 GIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDP 390
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLP 42
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
343-419 |
6.83e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 37.51 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084827067 343 EVFNAFLKKTFGIILVTGPTGSGKTTTLYSALKTLSTPEVNIVTIEDP----IEMVVEEFNQVGVQSQIGMDFASSLRTI 418
Cdd:cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASdlleGLVVAELFGHFLVRLLFELAEKAKPGVL 88
|
.
gi 1084827067 419 L 419
Cdd:cd00009 89 F 89
|
|
| |
