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Conserved domains on  [gi|1084353113|gb|AOX21985|]
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cytochrome b, partial (mitochondrion) [Circus hudsonius]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-243 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 503.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00119   45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00119  125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00119  205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00119  285 IPN 287
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-243 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 503.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00119   45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00119  125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00119  205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00119  285 IPN 287
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-243 1.38e-96

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 287.46  E-value: 1.38e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYlyKE----TWNTGIIL 76
Cdd:COG1290    53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  77 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALH-FLLPFLIASLTLIHLT 155
Cdd:COG1290   131 LLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLW 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 156 FLHESGSNNPLGI----ISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNllGDPENFTPANPLTTPPHIKPEWYF 231
Cdd:COG1290   211 LLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYF 288

                         250
                  ....*....|..
gi 1084353113 232 LFAYAILRSIPN 243
Cdd:COG1290   289 LPFYGILRAIPG 300
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-163 2.77e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 241.89  E-value: 2.77e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSY--LYKETWNTGIILLL 78
Cdd:cd00284    36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  79 TLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLH 158
Cdd:cd00284   116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                  ....*
gi 1084353113 159 ESGSN 163
Cdd:cd00284   196 EQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-161 6.74e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 215.32  E-value: 6.74e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYG--SYLYKETWNTGIILLL 78
Cdd:pfam00033  27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  79 TLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLH 158
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186


                  ...
gi 1084353113 159 ESG 161
Cdd:pfam00033 187 ETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-243 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 503.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00119   45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00119  125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00119  205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00119  285 IPN 287
CYTB MTH00131
cytochrome b; Provisional
 1-243 3.20e-165

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 461.43  E-value: 3.20e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00131   44 QILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLV 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00131  124 MMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHET 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00131  204 GSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00131  284 IPN 286
CYTB MTH00156
cytochrome b; Provisional
 1-243 9.01e-164

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 456.55  E-value: 9.01e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00156   34 QIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00156  114 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00156  194 GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00156  274 IPN 276
CYTB MTH00100
cytochrome b; Provisional
 1-243 3.84e-162

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 453.71  E-value: 3.84e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00100   44 QILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00100  124 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00100  204 GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00100  284 IPN 286
CYTB MTH00074
cytochrome b; Provisional
 1-243 1.11e-160

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 449.90  E-value: 1.11e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00074   45 QIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLV 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00074  125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHET 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00074  205 GSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00074  285 IPN 287
CYTB MTH00191
cytochrome b; Provisional
 1-243 4.70e-160

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 447.82  E-value: 4.70e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00191   41 QILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILS 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00191  121 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHET 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00191  201 GSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00191  281 IPN 283
CYTB MTH00145
cytochrome b; Provisional
 1-243 3.87e-154

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 433.18  E-value: 3.87e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00145   45 QILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLS 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00145  125 MGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHET 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00145  205 GSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00145  285 IPN 287
CYTB MTH00016
cytochrome b; Validated
 1-243 5.05e-146

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 412.53  E-value: 5.05e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00016   45 QILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLT 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00016  125 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQT 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00016  205 GSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00016  285 IPN 287
CYTB MTH00034
cytochrome b; Validated
 1-243 4.79e-144

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 407.55  E-value: 4.79e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00034   44 QIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLT 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00034  124 MLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQT 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00034  204 GSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00034  284 IPN 286
CYTB MTH00224
cytochrome b; Provisional
 1-243 6.66e-122

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 351.53  E-value: 6.66e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00224   45 QVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILT 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00224  125 MATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQT 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00224  205 GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00224  285 IPN 287
CYTB MTH00022
cytochrome b; Validated
 1-243 2.47e-121

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 350.15  E-value: 2.47e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00022   43 QIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLT 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00022  123 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVD 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00022  203 GSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00022  283 IPN 285
CYTB MTH00053
cytochrome b; Provisional
 1-243 6.02e-121

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 349.39  E-value: 6.02e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00053   45 QIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLM 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00053  125 ILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHED 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00053  205 GSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00053  285 IPN 287
CYTB MTH00033
cytochrome b; Provisional
 1-243 4.60e-97

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 288.76  E-value: 4.60e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00033   41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00033  121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFS--PNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAIL 238
Cdd:MTH00033  201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280


                  ....*
gi 1084353113 239 RSIPN 243
Cdd:MTH00033  281 RSIPN 285
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-243 1.38e-96

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 287.46  E-value: 1.38e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYlyKE----TWNTGIIL 76
Cdd:COG1290    53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  77 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALH-FLLPFLIASLTLIHLT 155
Cdd:COG1290   131 LLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLW 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 156 FLHESGSNNPLGI----ISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNllGDPENFTPANPLTTPPHIKPEWYF 231
Cdd:COG1290   211 LLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYF 288

                         250
                  ....*....|..
gi 1084353113 232 LFAYAILRSIPN 243
Cdd:COG1290   289 LPFYGILRAIPG 300
CYTB MTH00086
cytochrome b; Provisional
 1-243 2.31e-92

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 275.67  E-value: 2.31e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00086   33 QILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00086  113 MMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHST 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISNCDKIPFHPYFSLKDTLGFmLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRS 240
Cdd:MTH00086  193 GSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271


                  ...
gi 1084353113 241 IPN 243
Cdd:MTH00086  272 IPN 274
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-163 2.77e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 241.89  E-value: 2.77e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSY--LYKETWNTGIILLL 78
Cdd:cd00284    36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  79 TLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLH 158
Cdd:cd00284   116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                  ....*
gi 1084353113 159 ESGSN 163
Cdd:cd00284   196 EQGSS 200
CYTB MTH00046
cytochrome b; Validated
 1-241 1.40e-73

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 227.56  E-value: 1.40e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKETWNTGIILLLTL 80
Cdd:MTH00046   35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  81 MATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLHES 160
Cdd:MTH00046  115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 161 GSNNPLGIISN-CDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILR 239
Cdd:MTH00046  195 GSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274


                  ..
gi 1084353113 240 SI 241
Cdd:MTH00046  275 SI 276
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-161 6.74e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 215.32  E-value: 6.74e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYG--SYLYKETWNTGIILLL 78
Cdd:pfam00033  27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  79 TLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLTLIHLTFLH 158
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186


                  ...
gi 1084353113 159 ESG 161
Cdd:pfam00033 187 ETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
45-210 1.67e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 147.00  E-value: 1.67e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  45 SFFFICIYLHIGRGIYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAW 122
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 123 GGFSVDNPTLTRFFALHF-LLPFLIASLTLIHLTFLHESGSNNPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLAL 201
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1084353113 202 FSPNLLGDP 210
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-166 4.86e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 119.43  E-value: 4.86e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKE--TWNTGIILLL 78
Cdd:PRK03735   55 QILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFF 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  79 TLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALH-FLLPFLIASLTLIHLTFL 157
Cdd:PRK03735  135 VTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMI 214


                  ....*....
gi 1084353113 158 HESGSNNPL 166
Cdd:PRK03735  215 RKQGISGPL 223
petB CHL00070
cytochrome b6
 1-166 3.95e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.05  E-value: 3.95e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113   1 QILTGLLLATHYSADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGIYYGSYLYKE--TWNTGIILLL 78
Cdd:CHL00070   47 QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAV 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113  79 TLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALH-FLLPFLIASLTLIHLTFL 157
Cdd:CHL00070  127 LTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMI 206


                  ....*....
gi 1084353113 158 HESGSNNPL 166
Cdd:CHL00070  207 RKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 164-243 1.43e-28

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 105.42  E-value: 1.43e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084353113 164 NPLGIISNCDKIPFHPYFSLKDTLGFMLMLLPLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPN 243
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
215-243 4.98e-14

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 65.96  E-value: 4.98e-14
                          10        20
                  ....*....|....*....|....*....
gi 1084353113 215 PANPLTTPPHIKPEWYFLFAYAILRSIPN 243
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPS 29
petD CHL00058
cytochrome b6/f complex subunit IV
 215-243 4.18e-05

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 42.68  E-value: 4.18e-05
                          10        20
                  ....*....|....*....|....*....
gi 1084353113 215 PANPLTTPPHIKPEWYFLFAYAILRSIPN 243
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPN 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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