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Conserved domains on  [gi|1083613296|gb|OGH05712|]
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hypothetical protein A2426_04240 [Candidatus Lambdaproteobacteria bacterium RIFOXYC1_FULL_56_13]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FxsA super family cl01148
FxsA cytoplasmic membrane protein; This is a bacterial family of cytoplasmic membrane proteins. ...
 13-109 1.72e-04

FxsA cytoplasmic membrane protein; This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its over-expression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.


The actual alignment was detected with superfamily member pfam04186:

Pssm-ID: 470098  Cd Length: 109  Bit Score: 38.20  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083613296  13 VFVDLTFLLLVTRGTGLWIVALGQGAFSLAGFWFLRKKDLNLLFYLENEWHKGEPVVAELWEEGLVLLGCLCLIAPGFLS 92
Cdd:pfam04186   7 PLLEIALLILVGSAIGVLPTLLLVILTALLGAALARRQGRRTLRRLQQALAQGRMPGRELLDGLLLLVGGVLLLTPGFVT 86

                          90
                  ....*....|....*..
gi 1083613296  93 DLLGVLILTPSTRTGIK 109
Cdd:pfam04186  87 DVLGLLLLLPPTRRLIR 103
 
Name Accession Description Interval E-value
FxsA pfam04186
FxsA cytoplasmic membrane protein; This is a bacterial family of cytoplasmic membrane proteins. ...
 13-109 1.72e-04

FxsA cytoplasmic membrane protein; This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its over-expression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.


Pssm-ID: 427769  Cd Length: 109  Bit Score: 38.20  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083613296  13 VFVDLTFLLLVTRGTGLWIVALGQGAFSLAGFWFLRKKDLNLLFYLENEWHKGEPVVAELWEEGLVLLGCLCLIAPGFLS 92
Cdd:pfam04186   7 PLLEIALLILVGSAIGVLPTLLLVILTALLGAALARRQGRRTLRRLQQALAQGRMPGRELLDGLLLLVGGVLLLTPGFVT 86

                          90
                  ....*....|....*..
gi 1083613296  93 DLLGVLILTPSTRTGIK 109
Cdd:pfam04186  87 DVLGLLLLLPPTRRLIR 103
FxsA COG3030
FxsA protein affecting phage T7 exclusion by the F plasmid, UPF0716 family [General function ...
 14-105 2.75e-04

FxsA protein affecting phage T7 exclusion by the F plasmid, UPF0716 family [General function prediction only];


Pssm-ID: 442266  Cd Length: 144  Bit Score: 38.21  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083613296  14 FVDLTFLLLVTRGTGLWIVALGQGAFSLAGFWFLRKKDLNLLFYLENEWHKGEPVVAELWEEGLVLLGCLCLIAPGFLSD 93
Cdd:COG3030    14 LLEIALLIQVGSAIGVLPTLLLVVLTAVLGLLLLRRQGLRTLRRLQQALAQGELPARELLDGALLLLAGALLLTPGFLTD 93

                          90
                  ....*....|..
gi 1083613296  94 LLGVLILTPSTR 105
Cdd:COG3030    94 ALGLLLLLPPVR 105
 
Name Accession Description Interval E-value
FxsA pfam04186
FxsA cytoplasmic membrane protein; This is a bacterial family of cytoplasmic membrane proteins. ...
 13-109 1.72e-04

FxsA cytoplasmic membrane protein; This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its over-expression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.


Pssm-ID: 427769  Cd Length: 109  Bit Score: 38.20  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083613296  13 VFVDLTFLLLVTRGTGLWIVALGQGAFSLAGFWFLRKKDLNLLFYLENEWHKGEPVVAELWEEGLVLLGCLCLIAPGFLS 92
Cdd:pfam04186   7 PLLEIALLILVGSAIGVLPTLLLVILTALLGAALARRQGRRTLRRLQQALAQGRMPGRELLDGLLLLVGGVLLLTPGFVT 86

                          90
                  ....*....|....*..
gi 1083613296  93 DLLGVLILTPSTRTGIK 109
Cdd:pfam04186  87 DVLGLLLLLPPTRRLIR 103
FxsA COG3030
FxsA protein affecting phage T7 exclusion by the F plasmid, UPF0716 family [General function ...
 14-105 2.75e-04

FxsA protein affecting phage T7 exclusion by the F plasmid, UPF0716 family [General function prediction only];


Pssm-ID: 442266  Cd Length: 144  Bit Score: 38.21  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083613296  14 FVDLTFLLLVTRGTGLWIVALGQGAFSLAGFWFLRKKDLNLLFYLENEWHKGEPVVAELWEEGLVLLGCLCLIAPGFLSD 93
Cdd:COG3030    14 LLEIALLIQVGSAIGVLPTLLLVVLTAVLGLLLLRRQGLRTLRRLQQALAQGELPARELLDGALLLLAGALLLTPGFLTD 93

                          90
                  ....*....|..
gi 1083613296  94 LLGVLILTPSTR 105
Cdd:COG3030    94 ALGLLLLLPPVR 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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