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Conserved domains on  [gi|1083459758|gb|OGF63545|]
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hypothetical protein A2834_04500 [Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_01_FULL_45_23]

Protein Classification

serine protease( domain architecture ID 1904017)

serine protease-like (Spl) protein, having the catalytic triad His, Asp and Ser, has three main activity types: trypsin-, chymotrypsin-, and elastase-like, which cleave amide substrates following Arg or Lys, or following one of the hydrophobic amino acids, or following an Ala, respectively

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
eMpr super family cl42390
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ...
 21-95 2.51e-03

V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3591:

Pssm-ID: 442810 [Multi-domain]  Cd Length: 194  Bit Score: 35.04  E-value: 2.51e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083459758  21 NGKIESLSDALIKVETHVYKGLSGSILLFWDGNRHYAIGVTvgvyitpSEGYVDMA-VATRLTDKVIAEIEKKAAS 95
Cdd:COG3591   126 SGRVTGVQGNRLSYDCDTTGGSSGSPVLDDSDGGGRVVGVH-------SAGGADRAnTGVRLTSAIVAALRAWASA 194
 
Name Accession Description Interval E-value
eMpr COG3591
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ...
 21-95 2.51e-03

V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442810 [Multi-domain]  Cd Length: 194  Bit Score: 35.04  E-value: 2.51e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083459758  21 NGKIESLSDALIKVETHVYKGLSGSILLFWDGNRHYAIGVTvgvyitpSEGYVDMA-VATRLTDKVIAEIEKKAAS 95
Cdd:COG3591   126 SGRVTGVQGNRLSYDCDTTGGSSGSPVLDDSDGGGRVVGVH-------SAGGADRAnTGVRLTSAIVAALRAWASA 194
 
Name Accession Description Interval E-value
eMpr COG3591
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ...
 21-95 2.51e-03

V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442810 [Multi-domain]  Cd Length: 194  Bit Score: 35.04  E-value: 2.51e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083459758  21 NGKIESLSDALIKVETHVYKGLSGSILLFWDGNRHYAIGVTvgvyitpSEGYVDMA-VATRLTDKVIAEIEKKAAS 95
Cdd:COG3591   126 SGRVTGVQGNRLSYDCDTTGGSSGSPVLDDSDGGGRVVGVH-------SAGGADRAnTGVRLTSAIVAALRAWASA 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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