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Conserved domains on  [gi|1082303963|emb|SAR32126|]
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response regulator (activator) in two-component regulatory system wtih UhpB [Klebsiella variicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10360 super family cl32505
transcriptional regulator UhpA;
146-200 1.52e-04

transcriptional regulator UhpA;


The actual alignment was detected with superfamily member PRK10360:

Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 41.12  E-value: 1.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1082303963 146 LTRKETFLISLLMGGMPLCHVASTMQLTIKRVYYYRSRVLSKLAVKNNVELMNKV 200
Cdd:PRK10360  138 LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRM 192
 
Name Accession Description Interval E-value
PRK10360 PRK10360
transcriptional regulator UhpA;
146-200 1.52e-04

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 41.12  E-value: 1.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1082303963 146 LTRKETFLISLLMGGMPLCHVASTMQLTIKRVYYYRSRVLSKLAVKNNVELMNKV 200
Cdd:PRK10360  138 LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRM 192
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 146-196 2.09e-03

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 37.18  E-value: 2.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1082303963 146 LTRKETFLISLLMGGMPLCHVASTMQLTIKRVYYYRSRVLSKLAVKNNVEL 196
Cdd:COG2197    70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRTEL 120
 
Name Accession Description Interval E-value
PRK10360 PRK10360
transcriptional regulator UhpA;
146-200 1.52e-04

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 41.12  E-value: 1.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1082303963 146 LTRKETFLISLLMGGMPLCHVASTMQLTIKRVYYYRSRVLSKLAVKNNVELMNKV 200
Cdd:PRK10360  138 LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRM 192
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 146-196 2.09e-03

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 37.18  E-value: 2.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1082303963 146 LTRKETFLISLLMGGMPLCHVASTMQLTIKRVYYYRSRVLSKLAVKNNVEL 196
Cdd:COG2197    70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRTEL 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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