|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-516 |
6.69e-179 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 513.51 E-value: 6.69e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 1 MKKNKLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAM 80
Cdd:PRK10110 4 KTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 81 AIPLGLLKKEKEFGAFSGLVGFIAMHIGTNFYLTRADLL--VPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYD 158
Cdd:PRK10110 84 AIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILptTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 159 KVSNLKIPESLGFYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFSYAVAERVTIPFGLNHLV 238
Cdd:PRK10110 164 RFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHIL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 239 TSVFRFTPIGGTAVIDGETYFGTLNMFMAYVENNQIIPLDLAGK--MEQGKL-MIQYGLAGAALAIYRTAKPENRKALKG 315
Cdd:PRK10110 244 VALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATrfLSQGKMpAFLGGLPGAALAMYHCARPENRHKIKG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 316 LLISGVLTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMGFT-GDLIAFISFGVLRGTATGWPIAVLV 394
Cdd:PRK10110 324 LLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTdGNIIDFVVFGILHGLSTKWYMVPVV 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 395 AVLYFAIYYFVFKWAIIKFNIKTPGREDKEIKVSEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDVS 474
Cdd:PRK10110 404 AAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMS 483
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1081285176 475 LINEDAIKEAGGIAVVKLDEHTIQVIIGTQVYSLRKQMDKAM 516
Cdd:PRK10110 484 LVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLM 525
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
5-516 |
3.68e-170 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 490.89 E-value: 3.68e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 5 KLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAMAIPL 84
Cdd:TIGR02004 1 KATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 85 GLLKKEKEFGAFSGLVGFIAMHIGTNFYLTRADLLVPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSNLK 164
Cdd:TIGR02004 81 GLAREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLREAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYTVQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 165 IPESLGFYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFSYAVAERVTIPFGLNHLVTSVFRF 244
Cdd:TIGR02004 161 MPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 245 TPIGGTAVIDGETYFGTLNMFMAYVENNQIIPL--DLAGKMEQGKL-MIQYGLAGAALAIYRTAKPENRKALKGLLISGV 321
Cdd:TIGR02004 241 TEAGGSAVVCGKEVSGALNIFYAELQCNLPISAvpSATAFLSQGKMpTFLGGLPGAALAMYHCARPANRHKIKALLLSGV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 322 LTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMGFT-GDLIAFISFGVLRGTATGWPIAVLVAVLYFA 400
Cdd:TIGR02004 321 VACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTdGNLIDFLVFGVLQGTYTKWYLVPIVAAIWFV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 401 IYYFVFKWAIIKFNIKTPGRED-KEIKVSEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLINED 479
Cdd:TIGR02004 401 VYYFVFKTAITTFDLKTPGREKvLDAEEYTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVDDA 480
|
490 500 510
....*....|....*....|....*....|....*..
gi 1081285176 480 AIKEAGGIAVVKLDEHTIQVIIGTQVYSLRKQMDKAM 516
Cdd:TIGR02004 481 KLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
2-505 |
5.06e-66 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 220.97 E-value: 5.06e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 2 KKNKLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLgneyvNLVLNFMLTIGLFAFNNLGALFAMA 81
Cdd:COG1263 2 KKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGSFL-----SGTYQILNAAGDAVFYFLPLLFAIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 82 IPLGLlkkeKEFGAFSGLVGFIAMHIGTNFYLTRADllvpaeqmstnGQAMIMGIQT---YNTSVLGGIVAGLIVYAIyD 158
Cdd:COG1263 77 AAKGF----GGNPALAAVIGYLLVHPTLLNAYAVAG-----------GYISFLGIPTligYQGGVFPGILAGWLAAYL-E 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 159 KVSNLKIPESLGFYsgprLVPIVSLIVMSIVGL-LIPIVWPPFFNAFQSLGRWI-SSAGPLGYFSYAVAERVTIPFGLNH 236
Cdd:COG1263 141 KFLKKKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIyGLAGAIGGFIYGFLYRLLVPTGLHH 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 237 LVTSVFRFtPIGGTaviDGETYFGTLNMFMAyvennqiipldlagkmeqgklmiqyGLAGAALAIYRTAKPenRKALKGL 316
Cdd:COG1263 217 GLNPIFWF-LLGGT---GDDGLFPILAAAMF-------------------------GQPGAALAVYLKAKP--NKKVKGL 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 317 LISGVLTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVL---MGFTGdLIAFISFgvLRGTATGWPIAvL 393
Cdd:COG1263 266 AISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKafsFGVGG-LIDFPSI--LNPGATNLLLY-L 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 394 VAVLYFAIYYFVFKWAIikfniktpGREDKEIKVSEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDV 473
Cdd:COG1263 342 IGLVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIV 413
|
490 500 510
....*....|....*....|....*....|..
gi 1081285176 474 SLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV 505
Cdd:COG1263 414 VVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGV 445
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
16-353 |
8.88e-50 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 173.69 E-value: 8.88e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 16 GKTFMFPIALLSVSGMMLGLGagfTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAMAIPLGLlKKEKEFGA 95
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLG---NLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGL-AGGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 96 FSGLVGFIAMHIGTNFYltradllVPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSN---LKIPESLGFY 172
Cdd:pfam02378 77 AAGLIGLLSFNLAAAIS-------VALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 173 SGPRLVPIVS-LIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGP-LGYFSYAVAERVTIPFGLNHLVTSVFRFTPIGGT 250
Cdd:pfam02378 150 VGKRFVPIITgFVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGGiLGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGS 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 251 AVIDGETYFGtlnmfmayvennqiiplDLAGKMEQGKLMIQYGLAGAALAIYRTAKPENRKALKGLLISGVLTVIIGGIS 330
Cdd:pfam02378 230 NPIANQQAYG-----------------AGAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGIT 292
|
330 340
....*....|....*....|...
gi 1081285176 331 EPIEFLFLFISPALFAFHTFMNG 353
Cdd:pfam02378 293 EPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
444-516 |
2.45e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 93.37 E-value: 2.45e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV-YSLRKQMDKAM 516
Cdd:cd00212 5 KDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-516 |
6.69e-179 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 513.51 E-value: 6.69e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 1 MKKNKLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAM 80
Cdd:PRK10110 4 KTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 81 AIPLGLLKKEKEFGAFSGLVGFIAMHIGTNFYLTRADLL--VPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYD 158
Cdd:PRK10110 84 AIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILptTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 159 KVSNLKIPESLGFYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFSYAVAERVTIPFGLNHLV 238
Cdd:PRK10110 164 RFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHIL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 239 TSVFRFTPIGGTAVIDGETYFGTLNMFMAYVENNQIIPLDLAGK--MEQGKL-MIQYGLAGAALAIYRTAKPENRKALKG 315
Cdd:PRK10110 244 VALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATrfLSQGKMpAFLGGLPGAALAMYHCARPENRHKIKG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 316 LLISGVLTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMGFT-GDLIAFISFGVLRGTATGWPIAVLV 394
Cdd:PRK10110 324 LLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTdGNIIDFVVFGILHGLSTKWYMVPVV 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 395 AVLYFAIYYFVFKWAIIKFNIKTPGREDKEIKVSEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDVS 474
Cdd:PRK10110 404 AAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMS 483
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1081285176 475 LINEDAIKEAGGIAVVKLDEHTIQVIIGTQVYSLRKQMDKAM 516
Cdd:PRK10110 484 LVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLM 525
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
5-516 |
3.68e-170 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 490.89 E-value: 3.68e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 5 KLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAMAIPL 84
Cdd:TIGR02004 1 KATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 85 GLLKKEKEFGAFSGLVGFIAMHIGTNFYLTRADLLVPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSNLK 164
Cdd:TIGR02004 81 GLAREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLREAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYTVQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 165 IPESLGFYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFSYAVAERVTIPFGLNHLVTSVFRF 244
Cdd:TIGR02004 161 MPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 245 TPIGGTAVIDGETYFGTLNMFMAYVENNQIIPL--DLAGKMEQGKL-MIQYGLAGAALAIYRTAKPENRKALKGLLISGV 321
Cdd:TIGR02004 241 TEAGGSAVVCGKEVSGALNIFYAELQCNLPISAvpSATAFLSQGKMpTFLGGLPGAALAMYHCARPANRHKIKALLLSGV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 322 LTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMGFT-GDLIAFISFGVLRGTATGWPIAVLVAVLYFA 400
Cdd:TIGR02004 321 VACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTdGNLIDFLVFGVLQGTYTKWYLVPIVAAIWFV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 401 IYYFVFKWAIIKFNIKTPGRED-KEIKVSEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLINED 479
Cdd:TIGR02004 401 VYYFVFKTAITTFDLKTPGREKvLDAEEYTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVDDA 480
|
490 500 510
....*....|....*....|....*....|....*..
gi 1081285176 480 AIKEAGGIAVVKLDEHTIQVIIGTQVYSLRKQMDKAM 516
Cdd:TIGR02004 481 KLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
13-518 |
5.81e-103 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 318.26 E-value: 5.81e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 13 QMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAMAIPLGLLKKEKe 92
Cdd:TIGR02002 9 QKIGKALMLPVAVLPVAGILLGFGNANQNNQVFSFLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALGLAGNDG- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 93 FGAFSGLVGFIAMHiGTNFYLTRADLLVPAEqmSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSNLKIPESLGFY 172
Cdd:TIGR02002 88 VAGLAALVGYLIMN-KTMGVVAGLTLLLIAS--EIASFASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEYLGFF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 173 SGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGP-LGYFSYAVAERVTIPFGLNHLVTSVFRFTpIGGTA 251
Cdd:TIGR02002 165 AGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNPvVAFFIFGFIERSLIPFGLHHIFNAPFWFE-FGSYT 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 252 VIDGETYFGTLNMFMAYVENNqiIPLDLAGKMEQGKLMIQYGLAGAALAIYRTAKPENRKALKGLLISGVLTVIIGGISE 331
Cdd:TIGR02002 244 NEAGNLFRGDQPIFMAQLKDG--VAFTAGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITE 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 332 PIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMG--FTGDLIAFISFGVLRGTATGWpIAVLVAVLYFAIYYFVFKWA 409
Cdd:TIGR02002 322 PLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGttFSGGAIDFILYGLLSNRSKAW-LFIIVGIGYAIIYYFLFRFL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 410 IIKFNIKTPGREDKEIKV-SEGNGSDFknlstykGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIA 488
Cdd:TIGR02002 401 IKKLNLKTPGREDATAEAkATGEPSEL-------AFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGAAG 473
|
490 500 510
....*....|....*....|....*....|
gi 1081285176 489 VVKLDEhTIQVIIGTQVYSLRKQMDKAMEG 518
Cdd:TIGR02002 474 VLVVGN-NVQAIFGPKSDTIKSEMHDIIRG 502
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
11-512 |
2.30e-100 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 310.93 E-value: 2.30e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 11 FFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMiemvpflgneyvnLVLNFMLTIGLFAFNNLGALFAMAIPLGLLKKE 90
Cdd:TIGR01998 4 YFQKLGRALMLPIATLPVAALLLRIGNATHGADL-------------LVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 91 KEFGAFSGLVGFiamhigtnFYLTRADLLVPAEQMSTNGQAMIMGIQTYNtSVLGGIVAGLIVYAIYDKVSNLKIPESLG 170
Cdd:TIGR01998 71 DGAAALAGLVAY--------FVVTKVLSPPPLAAALGIKSEINMAFSAWK-NVFVGILAGLIAGALYNRFSEIKLPEALS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 171 FYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFSYAVAERVTIPFGLNHLVTSVFRFTPIG-- 248
Cdd:TIGR01998 142 FFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDVAGin 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 249 ----GTAVIDGETYFGTLNMFMAyvennQIIPLdlagkmeqgklmIQYGLAGAALAIYRTAKPENRKALKGLLISGVLTV 324
Cdd:TIGR01998 222 dfgnFTGGGDLNRFKGIAGMFMA-----GFFPI------------MMFGLPAAALAMYHTARPERRKQVGGMLLSVAFAS 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 325 IIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMG--FTGDLIAFI-SFGvlRGTATGWPIAVLVAVLYFAI 401
Cdd:TIGR01998 285 FLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGfsFSAGLIDYVlSFN--NPTANQPLMLLVQGLVFFAL 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 402 YYFVFKWAIIKFNIKTPGREDKEIKV-SEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDA 480
Cdd:TIGR01998 363 YYVVFRFAIRRFNLKTPGREDEDPEGaTAAAVTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPA 442
|
490 500 510
....*....|....*....|....*....|..
gi 1081285176 481 IKEAGGIAVVKLDEHTIQVIIGTQVYSLRKQM 512
Cdd:TIGR01998 443 LKALGARGVVKLGKHNLQVILGPLAEIVAGEM 474
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
13-519 |
1.08e-89 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 283.14 E-value: 1.08e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 13 QMLGKTFMFPIALLSVSGMMLGLG-AGFTdpkmieMVPflgneyvNLVLNFMLTIGLFAFNNLGALFAMAIPLGLLKKEk 91
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVGsANFS------WLP-------AVVSHVMAEAGGSVFANMPLIFAIGVALGFTNND- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 92 efgAFSGLVGFIAMHIGTnfyltrADLLVPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSNLKIPESLGF 171
Cdd:PRK11089 76 ---GVSALAAVVAYGIMV------KTMAVVAPLVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEYLGF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 172 YSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFS-YAVAERVTIPFGLNHLVTSVFRFTpIGGT 250
Cdd:PRK11089 147 FAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGiYGFVERSLVPFGLHHIWNVPFQMQ-IGEY 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 251 AVIDGETYFGTLNMFMAyvennqiiPLDLAGKMEQGKLMIQYGLAGAALAIYRTAKPENRKALKGLLISGVLTVIIGGIS 330
Cdd:PRK11089 226 TNAAGQVFHGDIPRYMA--------GDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGIT 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 331 EPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMG--FTGDLIAFIsfgVLRGTATGWPIAVLVAVLYFAIYYFVFKW 408
Cdd:PRK11089 298 EPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGtsFSHGLIDFI---VLSGNSSKLWLFPIVGIGYAIVYYTIFRV 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 409 AIIKFNIKTPGREDKEIKVSEGNGSDFknlstykGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIA 488
Cdd:PRK11089 375 LIKALDLKTPGREDETEDAKATGTSEM-------APALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAG 447
|
490 500 510
....*....|....*....|....*....|.
gi 1081285176 489 VVkLDEHTIQVIIGTQVYSLRKQMDKAMEGH 519
Cdd:PRK11089 448 VV-VAGSGVQAIFGTKSDNLKTEMDEYIRNH 477
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
11-514 |
3.93e-68 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 231.30 E-value: 3.93e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 11 FFQMLGKTFMFPIALLSVSGMMLGLGagftDPKMIEMvpflgneyvnlvlNFMLTIGLFAFNNLGALFAMAIPLGLLKKE 90
Cdd:PRK10255 6 FFQRLGRALQLPIAVLPVAALLLRFG----QPDLLNV-------------AFIAQAGGAIFDNLALIFAIGVASSWSKDS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 91 KEFGAFSGLVGFiamhigtnFYLTRAdllvpaeqmstngqaMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSNLKIPESLG 170
Cdd:PRK10255 69 AGAAALAGAVGY--------FVLTKA---------------MVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLS 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 171 FYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGPLGYFSYAVAERVTIPFGLNHLVTSVFRFTpIGGT 250
Cdd:PRK10255 126 FFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ-IGEF 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 251 AVIDGETYFGTLNMFMayvennqiipldlAGKMEQGKLM------IQYGLAGAALAIYRTAKPENRKALKGLLISGVLTV 324
Cdd:PRK10255 205 TNAAGTVFHGDINRFY-------------AGDGTAGMFMsgffpiMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTA 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 325 IIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMGFT---GDLIAFISFGVLRGTATGWPIAVLvAVLYFAI 401
Cdd:PRK10255 272 FLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSfsaGAIDYALMYNLPAASQNVWMLLVM-GVVFFAI 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 402 YYFVFKWAIIKFNIKTPGREDK--EIKVSEGNGSDFKNLSTYkGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLINED 479
Cdd:PRK10255 351 YFVLFSAVIRMFNLKTPGREDKedEIVTEEANSNTEEGLTQL-ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDA 429
|
490 500 510
....*....|....*....|....*....|....*
gi 1081285176 480 AIKEAGGIAVVKLDEHTIQVIIGTQVYSLRKQMDK 514
Cdd:PRK10255 430 MCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKK 464
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
2-505 |
5.06e-66 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 220.97 E-value: 5.06e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 2 KKNKLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGAGFTDPKMIEMVPFLgneyvNLVLNFMLTIGLFAFNNLGALFAMA 81
Cdd:COG1263 2 KKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGSFL-----SGTYQILNAAGDAVFYFLPLLFAIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 82 IPLGLlkkeKEFGAFSGLVGFIAMHIGTNFYLTRADllvpaeqmstnGQAMIMGIQT---YNTSVLGGIVAGLIVYAIyD 158
Cdd:COG1263 77 AAKGF----GGNPALAAVIGYLLVHPTLLNAYAVAG-----------GYISFLGIPTligYQGGVFPGILAGWLAAYL-E 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 159 KVSNLKIPESLGFYsgprLVPIVSLIVMSIVGL-LIPIVWPPFFNAFQSLGRWI-SSAGPLGYFSYAVAERVTIPFGLNH 236
Cdd:COG1263 141 KFLKKKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIyGLAGAIGGFIYGFLYRLLVPTGLHH 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 237 LVTSVFRFtPIGGTaviDGETYFGTLNMFMAyvennqiipldlagkmeqgklmiqyGLAGAALAIYRTAKPenRKALKGL 316
Cdd:COG1263 217 GLNPIFWF-LLGGT---GDDGLFPILAAAMF-------------------------GQPGAALAVYLKAKP--NKKVKGL 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 317 LISGVLTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVL---MGFTGdLIAFISFgvLRGTATGWPIAvL 393
Cdd:COG1263 266 AISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKafsFGVGG-LIDFPSI--LNPGATNLLLY-L 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 394 VAVLYFAIYYFVFKWAIikfniktpGREDKEIKVSEGNGSDFKNLSTYKGQQMISALGGQSNILSLDNCVTRLRLKLQDV 473
Cdd:COG1263 342 IGLVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIV 413
|
490 500 510
....*....|....*....|....*....|..
gi 1081285176 474 SLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV 505
Cdd:COG1263 414 VVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGV 445
|
|
| PTS-II-BC-unk1 |
TIGR02003 |
PTS system, IIBC component; This model represents a family of fused B and C components of PTS ... |
5-509 |
1.23e-56 |
|
PTS system, IIBC component; This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131058 [Multi-domain] Cd Length: 548 Bit Score: 198.26 E-value: 1.23e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 5 KLGLWNFFQMLGKTFMFPIALLSVSGMMLGLGagftdpKMIEMVPFLGNeYVNLVLNFMLTIGLFAFNNLGALFAMAIPl 84
Cdd:TIGR02003 1 KIFRFDFWQKFGKALLVVIAVMPAAGLMISIG------KLIGMIAGDSA-ALASIANIIADIGWAIITNLHILFALAIG- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 85 GLLKKEKEFGAFSGLVGFIAMH-IGTNFYLTRADLLVPAEQMSTNGQAMIMGIQTYNTSVLG----------GIVAGLIV 153
Cdd:TIGR02003 73 GSWAKDRAGGAFAAGLAFVLINrITGAFFGVNAAMLADPEAKISSFIAGDLIVKDYFTSVLEapalnmgvfvGIIAGFLG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 154 YAIYDKVSNL-KIPESLGFYSGPRLVPIVSLIVMSIVGLLIPIVWPPFFNAFQSLGRWIS----SAGPLGYFSYAVAERV 228
Cdd:TIGR02003 153 ATAYNKYYNYdKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWPFIQSGINEFGMWIAaskdSAPILAPFLYGTLERL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 229 TIPFGLNHLVTSVFRFTPIGGTAVI-----DGETYFGTLNMFMAYVEN-------------NQIIPLDLAGKMEQGKLMI 290
Cdd:TIGR02003 233 LLPFGLHHMLTIPMNYTALGGTYEMltgaaAGQKVAGQDPLWLAWITDlnhlkangdakayNDLLDNVTPARFKAGQMIG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 291 QYG-LAGAALAIYRTAKPENRKALKGLLISGVLTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGVLMGFT 369
Cdd:TIGR02003 313 ATAaLMGIAFAMFRNVDADKKAKYKMMFISAAAAVFLTGVTEPIEFLFMFAAMPLYIVYAITQGAAFALADLINLRVHAF 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 370 G--DLIAFISFGVLRGTATGWPIAVLVAVLYFAIYYFVFKWAIIKFNIKTPGR------EDKEIKVSEGNGSDfKNLSTY 441
Cdd:TIGR02003 393 GfiELITRTPMALKAGLGMDLINFVIVSILFAGIMFFIADFLIKKFHLATAGRagnydaDIEDDRASEARGNQ-QADSGS 471
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1081285176 442 KGQQMISALGGQSNILSLDNCVTRLRLKLQDVSLIN-EDAIKEAGGIAVVKLDEhTIQVIIGTQVYSLR 509
Cdd:TIGR02003 472 LATKIIDLLGGAENIADVDACMTRLRVTVKDLAKVAaEADWKKADALGLIQKDK-GVQAVYGPKADVLK 539
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
16-353 |
8.88e-50 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 173.69 E-value: 8.88e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 16 GKTFMFPIALLSVSGMMLGLGagfTDPKMIEMVPFLGNEYVNLVLNFMLTIGLFAFNNLGALFAMAIPLGLlKKEKEFGA 95
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLG---NLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGL-AGGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 96 FSGLVGFIAMHIGTNFYltradllVPAEQMSTNGQAMIMGIQTYNTSVLGGIVAGLIVYAIYDKVSN---LKIPESLGFY 172
Cdd:pfam02378 77 AAGLIGLLSFNLAAAIS-------VALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 173 SGPRLVPIVS-LIVMSIVGLLIPIVWPPFFNAFQSLGRWISSAGP-LGYFSYAVAERVTIPFGLNHLVTSVFRFTPIGGT 250
Cdd:pfam02378 150 VGKRFVPIITgFVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGGiLGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGS 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 251 AVIDGETYFGtlnmfmayvennqiiplDLAGKMEQGKLMIQYGLAGAALAIYRTAKPENRKALKGLLISGVLTVIIGGIS 330
Cdd:pfam02378 230 NPIANQQAYG-----------------AGAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGIT 292
|
330 340
....*....|....*....|...
gi 1081285176 331 EPIEFLFLFISPALFAFHTFMNG 353
Cdd:pfam02378 293 EPLEFGFPFVLNPPFFIPAILAG 315
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
67-364 |
1.09e-38 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 142.84 E-value: 1.09e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 67 GLFAFNNLGALFAMAIPLGLLKKEKEFGAFSGLVGFIAMhigTNFYLTRADLLVPAEQMSTNgqamimgiQTYNTSVLGG 146
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVL---NNAMGVGAQAVGNFFGFEIA--------KVGYTGVVGP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 147 IVAGLIVYAIYDKVSNLKIPESLGFYSGPRLVPIVSLIVMSIVGLLIPIVWPPFfnAFQSLGRWI-SSAGPLGYFSYAVA 225
Cdd:TIGR00852 70 IIVGAIALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLySAGGALGGAIFGFL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 226 ERVTIPFGLNHLVTSVFRFTPIGGTAVIDGETYFGTLNMFMAYVEN--NQIIPLDLAGKMEQGK-LMIQYGLAGAALAIY 302
Cdd:TIGR00852 148 YRLLVPTGLHHIFYAIFIQLIAGGTVIGGGQVIPGDALANMAQGGAalAVFFTAGDAKFKSIGLpAAFSAGLGITEPAMY 227
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081285176 303 RTAKPENRKALKGLLISGVLTVIIGGISEPIEFLFLFISPALFAFHTFMNGLANMVLPYLGV 364
Cdd:TIGR00852 228 GVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
444-516 |
6.46e-24 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 95.19 E-value: 6.46e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDeHTIQVIIGTQVYSLRKQMDKAM 516
Cdd:COG1264 5 KDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNG-GQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
444-516 |
2.45e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 93.37 E-value: 2.45e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV-YSLRKQMDKAM 516
Cdd:cd00212 5 KDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
392-524 |
7.46e-19 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 83.61 E-value: 7.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 392 VLVAVLYFAIYYFVFKWAIIKFNIKTPGREDKEIKV---SEGNGSDFKNLSTYKGQQM------ISALGGQSNILSLDNC 462
Cdd:PRK09702 13 IAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLyskAEYKASRGQTTAAEPKKELdqaagiLQALGGVGNISSINNC 92
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081285176 463 VTRLRLKLQDVS-LINEDAIKEAGGIAVVKLDEhTIQVIIGTQVYSLRKQMDKAMEGHLEACN 524
Cdd:PRK09702 93 ATRLRIALHDMSqTLDDEVFKKLGAHGVFRSGD-AIQVIIGLHVSQLREQLDSLINSHQSAEN 154
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
412-502 |
6.61e-18 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 78.55 E-value: 6.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285176 412 KFNIKTPGREDKEIKVSEgNGSDFKNLSTYKGQqmISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVK 491
Cdd:TIGR00826 2 RLRLKTPGREKADEEAIA-AGEGVKGVFTAAGQ--IQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNP 78
|
90
....*....|.
gi 1081285176 492 LdEHTIQVIIG 502
Cdd:TIGR00826 79 L-QRAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
444-475 |
1.09e-09 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 53.53 E-value: 1.09e-09
10 20 30
....*....|....*....|....*....|..
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSL 475
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
444-505 |
1.03e-07 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 54.66 E-value: 1.03e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV 505
Cdd:TIGR01995 6 KAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDV 67
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
444-502 |
6.36e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 51.99 E-value: 6.36e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIG 502
Cdd:PRK09586 10 NTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLG 68
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
444-505 |
2.45e-06 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 50.18 E-value: 2.45e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV 505
Cdd:PRK09796 10 RSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTV 71
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
444-505 |
5.88e-06 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 48.94 E-value: 5.88e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIGTQV 505
Cdd:PRK09824 8 REIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHV 69
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
444-505 |
3.52e-05 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 46.22 E-value: 3.52e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1081285176 444 QQMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEaggIAVVK---LDEHTIQVIIGTQV 505
Cdd:PRK11007 11 DRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQ---LPMVKgcfTNAGQFQVVIGTEV 72
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
445-517 |
2.73e-04 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 43.10 E-value: 2.73e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081285176 445 QMISALGGQSNILSLDNCVTRLRLKLQDVSLINEDAIKEAGGIAVVKLDEHTIQVIIGTQ-VYSLRKQMDKAME 517
Cdd:PRK14905 280 QLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGiVEKIHEEMKALLA 353
|
|
| |
