NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1081189302|gb|OFT34443|]
View 

molecular chaperone Hsp70 [Corynebacterium sp. HMSC08A12]

Protein Classification

Hsp70 family protein( domain architecture ID 11418513)

Hsp70 (heat shock protein 70) family protein is a molecular chaperone involved in DNA replication, protein folding and the stress response; similar to Grapevine leafroll-associated virus movement protein Hsp70h, which transports viral genomes to neighboring plant cells directly through the plasmodesmata

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DnaK COG0443
Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones] ...
7-367 1.92e-65

Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440212 [Multi-domain]  Cd Length: 473  Bit Score: 223.55  E-value: 1.92e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAhqSPMGREISALALTHRSNIMPSAVFLDaphgahaaadEEPTLLNGDSALARGRRDPSRLLLSPKRY 86
Cdd:COG0443     2 IGIDLGTTNSVVA--VVEGGEPQVIPNAEGRRTLPSVVAFP----------KDGEVLVGEAAKRQAVTNPGRTIRSIKRL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  87 IDHD----EVQLAGRSLPLTKVVGSVIATvLRSGKAQHANQDPETVTLTHPEAWSAHSVEQLKRSAVAAGVPEqnLRVLS 162
Cdd:COG0443    70 LGRSlfdeATEVGGKRYSPEEISALILRK-LKADAEAYLGEPVTRAVITVPAYFDDAQRQATKDAARIAGLEV--LRLLN 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 163 EPRAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD-DPDL 241
Cdd:COG0443   147 EPTAAALAYGLDKG-KEEETILVYDLGGGTFDVSILRL-GDGVFEVLATGGDTHLGGDDFDQALADYVAPEFGKEeGIDL 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 242 adfvRSAPItTVHALESSIREAKEILSDTSSATISVSTPHGET-DLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDST 320
Cdd:COG0443   225 ----RLDPA-ALQRLREAAEKAKIELSSADEAEINLPFSGGKHlDVELTRAEFEELIAPLVERTLDPVRQALADAGLSPS 299
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1081189302 321 K-TPIYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA--LAATLRG 367
Cdd:COG0443   300 DiDAVLLVGGSTRMPAVRERVKELfgKEPLKGVDPDEAVALGAaiQAGVLAG 351
 
Name Accession Description Interval E-value
DnaK COG0443
Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones] ...
7-367 1.92e-65

Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440212 [Multi-domain]  Cd Length: 473  Bit Score: 223.55  E-value: 1.92e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAhqSPMGREISALALTHRSNIMPSAVFLDaphgahaaadEEPTLLNGDSALARGRRDPSRLLLSPKRY 86
Cdd:COG0443     2 IGIDLGTTNSVVA--VVEGGEPQVIPNAEGRRTLPSVVAFP----------KDGEVLVGEAAKRQAVTNPGRTIRSIKRL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  87 IDHD----EVQLAGRSLPLTKVVGSVIATvLRSGKAQHANQDPETVTLTHPEAWSAHSVEQLKRSAVAAGVPEqnLRVLS 162
Cdd:COG0443    70 LGRSlfdeATEVGGKRYSPEEISALILRK-LKADAEAYLGEPVTRAVITVPAYFDDAQRQATKDAARIAGLEV--LRLLN 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 163 EPRAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD-DPDL 241
Cdd:COG0443   147 EPTAAALAYGLDKG-KEEETILVYDLGGGTFDVSILRL-GDGVFEVLATGGDTHLGGDDFDQALADYVAPEFGKEeGIDL 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 242 adfvRSAPItTVHALESSIREAKEILSDTSSATISVSTPHGET-DLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDST 320
Cdd:COG0443   225 ----RLDPA-ALQRLREAAEKAKIELSSADEAEINLPFSGGKHlDVELTRAEFEELIAPLVERTLDPVRQALADAGLSPS 299
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1081189302 321 K-TPIYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA--LAATLRG 367
Cdd:COG0443   300 DiDAVLLVGGSTRMPAVRERVKELfgKEPLKGVDPDEAVALGAaiQAGVLAG 351
ASKHA_NBD_HSP70_DnaK_HscA_HscC cd24029
nucleotide-binding domain (NBD) of Escherichia coli chaperone proteins DnaK, HscA, HscC and ...
10-365 1.66e-52

nucleotide-binding domain (NBD) of Escherichia coli chaperone proteins DnaK, HscA, HscC and similar proteins; Escherichia coli DnaK, also called heat shock 70 kDa protein/HSP70, plays an essential role in the initiation of phage lambda DNA replication, where it acts in an ATP-dependent fashion with the DnaJ protein to release lambda O and P proteins from the preprimosomal complex. DnaK is also involved in chromosomal DNA replication, possibly through an analogous interaction with the DnaA protein. Moreover, DnaK participates actively in the response to hyperosmotic shock. Escherichia coli HscA, also called Hsc66, acts as a chaperone involved in the maturation of iron-sulfur cluster-containing proteins. It has a low intrinsic ATPase activity which is markedly stimulated by HscB. It is involved in the maturation of IscU. Escherichia coli HscC, also called Hsc62, or YbeW, may act as the chaperone. It has ATPase activity. It cannot be stimulated by DnaJ. The family also includes Saccharomyces cerevisiae stress-seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and Ssc3p (also called extracellular mutant protein 10/Ecm10), and Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p; Ssh1p; mtHSP70 homolog). They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively.


Pssm-ID: 466879 [Multi-domain]  Cd Length: 351  Bit Score: 185.09  E-value: 1.66e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  10 DFGTSNTAAAHQSPMGREISALALTHRsNIMPSAVFLDAphgahaaaDEEPTLlnGDSALARGRRDPSRLLLSPKRYIdh 89
Cdd:cd24029     4 DLGTTNSAVAYWDGNGAEVIIENSEGK-RTTPSVVYFDK--------DGEVLV--GEEAKNQALLDPENTIYSVKRLM-- 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  90 devqlaGRSLPLTKVVGS-------VIATVLRSGKAQHANQDPETVT---LTHPEAWSAHSVEQLKRSAVAAGVPEqnLR 159
Cdd:cd24029    71 ------GRDTKDKEEIGGkeytpeeISAEILKKLKEDAEEQLGGEVKgavITVPAYFNDKQRKATKKAAELAGLNV--LR 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 160 VLSEPRAAAIHYASQqSVQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEhddP 239
Cdd:cd24029   143 LINEPTAAALAYGLD-KEGKDGTILVYDLGGGTFDVSILEIE-NGKFEVLATGGDNFLGGDDFDEAIAELILEKIG---I 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 240 DLADFVRSAPITTVHALESSIREAKEILSDTSSATISVSTPH--GETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGV 317
Cdd:cd24029   218 ETGILDDKEDERARARLREAAEEAKIELSSSDSTDILILDDGkgGELEIEITREEFEELIAPLIERTIDLLEKALKDAKL 297
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1081189302 318 DSTKTP-IYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA--LAATL 365
Cdd:cd24029   298 SPEDIDrVLLVGGSSRIPLVREMLEEYfgREPISSVDPDEAVAKGAaiYAASL 350
hscA PRK05183
chaperone protein HscA; Provisional
145-360 1.03e-32

chaperone protein HscA; Provisional


Pssm-ID: 235360 [Multi-domain]  Cd Length: 616  Bit Score: 134.15  E-value: 1.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 145 KRSAVAAGVpeqN-LRVLSEPRAAAIHYAsqqsVQSGS--HVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRT 221
Cdd:PRK05183  169 KDAARLAGL---NvLRLLNEPTAAAIAYG----LDSGQegVIAVYDLGGGTFDISILRLS-KGVFEVLATGGDSALGGDD 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 222 IDNLLYRWVLDQLeHDDPDLADFVRSAPITTVhalessiREAKEILSDTSSATISVSTPHGEtdllITRDEFNNVIEQSI 301
Cdd:PRK05183  241 FDHLLADWILEQA-GLSPRLDPEDQRLLLDAA-------RAAKEALSDADSVEVSVALWQGE----ITREQFNALIAPLV 308
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081189302 302 MRGVELTRAALTQAGVDSTKT-PIYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA 360
Cdd:PRK05183  309 KRTLLACRRALRDAGVEADEVkEVVMVGGSTRVPLVREAVGEFfgRTPLTSIDPDKVVAIGA 370
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
158-367 2.68e-22

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 101.57  E-value: 2.68e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLrAKGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:pfam00012 164 LRIVNEPTAAALAYGLDKT-DKERNIAVYDLGGGTFDVSIL-EIGRGVFEVKATNGDTHLGGEDFDLRLVDHLAEEFKKK 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 -DPDLADFVRSapittVHALESSIREAKEILSDTSSAT----ISVSTPHGETDLLITRDEFNNVIEQSIMRGVELTRAAL 312
Cdd:pfam00012 242 yGIDLSKDKRA-----LQRLREAAEKAKIELSSNQTNInlpfITAMADGKDVSGTLTRAKFEELVADLFERTLEPVEKAL 316
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081189302 313 TQAGVDstKTPIY---MTGGSSRIPFVQDRLGEvgtvMTLDDPKT------VVSRGA--LAATLRG 367
Cdd:pfam00012 317 KDAGLS--KSEIDevvLVGGSTRIPAVQELVKE----FFGKEPSKgvnpdeAVAIGAavQAGVLSG 376
 
Name Accession Description Interval E-value
DnaK COG0443
Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones] ...
7-367 1.92e-65

Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440212 [Multi-domain]  Cd Length: 473  Bit Score: 223.55  E-value: 1.92e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAhqSPMGREISALALTHRSNIMPSAVFLDaphgahaaadEEPTLLNGDSALARGRRDPSRLLLSPKRY 86
Cdd:COG0443     2 IGIDLGTTNSVVA--VVEGGEPQVIPNAEGRRTLPSVVAFP----------KDGEVLVGEAAKRQAVTNPGRTIRSIKRL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  87 IDHD----EVQLAGRSLPLTKVVGSVIATvLRSGKAQHANQDPETVTLTHPEAWSAHSVEQLKRSAVAAGVPEqnLRVLS 162
Cdd:COG0443    70 LGRSlfdeATEVGGKRYSPEEISALILRK-LKADAEAYLGEPVTRAVITVPAYFDDAQRQATKDAARIAGLEV--LRLLN 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 163 EPRAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD-DPDL 241
Cdd:COG0443   147 EPTAAALAYGLDKG-KEEETILVYDLGGGTFDVSILRL-GDGVFEVLATGGDTHLGGDDFDQALADYVAPEFGKEeGIDL 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 242 adfvRSAPItTVHALESSIREAKEILSDTSSATISVSTPHGET-DLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDST 320
Cdd:COG0443   225 ----RLDPA-ALQRLREAAEKAKIELSSADEAEINLPFSGGKHlDVELTRAEFEELIAPLVERTLDPVRQALADAGLSPS 299
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1081189302 321 K-TPIYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA--LAATLRG 367
Cdd:COG0443   300 DiDAVLLVGGSTRMPAVRERVKELfgKEPLKGVDPDEAVALGAaiQAGVLAG 351
ASKHA_NBD_HSP70_DnaK_HscA_HscC cd24029
nucleotide-binding domain (NBD) of Escherichia coli chaperone proteins DnaK, HscA, HscC and ...
10-365 1.66e-52

nucleotide-binding domain (NBD) of Escherichia coli chaperone proteins DnaK, HscA, HscC and similar proteins; Escherichia coli DnaK, also called heat shock 70 kDa protein/HSP70, plays an essential role in the initiation of phage lambda DNA replication, where it acts in an ATP-dependent fashion with the DnaJ protein to release lambda O and P proteins from the preprimosomal complex. DnaK is also involved in chromosomal DNA replication, possibly through an analogous interaction with the DnaA protein. Moreover, DnaK participates actively in the response to hyperosmotic shock. Escherichia coli HscA, also called Hsc66, acts as a chaperone involved in the maturation of iron-sulfur cluster-containing proteins. It has a low intrinsic ATPase activity which is markedly stimulated by HscB. It is involved in the maturation of IscU. Escherichia coli HscC, also called Hsc62, or YbeW, may act as the chaperone. It has ATPase activity. It cannot be stimulated by DnaJ. The family also includes Saccharomyces cerevisiae stress-seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and Ssc3p (also called extracellular mutant protein 10/Ecm10), and Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p; Ssh1p; mtHSP70 homolog). They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively.


Pssm-ID: 466879 [Multi-domain]  Cd Length: 351  Bit Score: 185.09  E-value: 1.66e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  10 DFGTSNTAAAHQSPMGREISALALTHRsNIMPSAVFLDAphgahaaaDEEPTLlnGDSALARGRRDPSRLLLSPKRYIdh 89
Cdd:cd24029     4 DLGTTNSAVAYWDGNGAEVIIENSEGK-RTTPSVVYFDK--------DGEVLV--GEEAKNQALLDPENTIYSVKRLM-- 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  90 devqlaGRSLPLTKVVGS-------VIATVLRSGKAQHANQDPETVT---LTHPEAWSAHSVEQLKRSAVAAGVPEqnLR 159
Cdd:cd24029    71 ------GRDTKDKEEIGGkeytpeeISAEILKKLKEDAEEQLGGEVKgavITVPAYFNDKQRKATKKAAELAGLNV--LR 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 160 VLSEPRAAAIHYASQqSVQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEhddP 239
Cdd:cd24029   143 LINEPTAAALAYGLD-KEGKDGTILVYDLGGGTFDVSILEIE-NGKFEVLATGGDNFLGGDDFDEAIAELILEKIG---I 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 240 DLADFVRSAPITTVHALESSIREAKEILSDTSSATISVSTPH--GETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGV 317
Cdd:cd24029   218 ETGILDDKEDERARARLREAAEEAKIELSSSDSTDILILDDGkgGELEIEITREEFEELIAPLIERTIDLLEKALKDAKL 297
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1081189302 318 DSTKTP-IYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA--LAATL 365
Cdd:cd24029   298 SPEDIDrVLLVGGSSRIPLVREMLEEYfgREPISSVDPDEAVAKGAaiYAASL 350
ASKHA_NBD_HSP70 cd10170
nucleotide-binding domain (NBD) of the HSP70 family; HSP70 (70-kDa heat shock protein) family ...
7-361 3.57e-43

nucleotide-binding domain (NBD) of the HSP70 family; HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. The HSP70 family belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466811 [Multi-domain]  Cd Length: 329  Bit Score: 158.81  E-value: 3.57e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAHqspmgreisalalthrsnimpsaVFLDAPHGAHAAADEEPTLLNGDSALArgrrdPSRLLLspkrY 86
Cdd:cd10170     1 VGIDFGTTYSGVAY-----------------------ALLGPGEPPLVVLQLPWPGGDGGSSKV-----PSVLEV----V 48
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  87 IDHdevqlagrslpLTKVVgsviATVLRSGKAQHANQD--PETVTLTHPEAWSAHSVEQLKRSAVAAG--VPEQNLRVLS 162
Cdd:cd10170    49 ADF-----------LRALL----EHAKAELGDRIWELEkaPIEVVITVPAGWSDAAREALREAARAAGfgSDSDNVRLVS 113
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 163 EPRAAAIHYASQQS----VQSGSHVAVFDFGGGTLDIAVLRAKGDGNFEV--VAAKGDNSLGGRTIDNLLYRWVLDQLEH 236
Cdd:cd10170   114 EPEAAALYALEDKGdllpLKPGDVVLVCDAGGGTVDLSLYEVTSGSPLLLeeVAPGGGALLGGTDIDEAFEKLLREKLGD 193
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 237 DDPDLAdfvrSAPITTVHALESSIREAKEILSDTSSATISVSTPHGETD---------LLITRDEFNNVIEQSIMRGVEL 307
Cdd:cd10170   194 KGKDLG----RSDADALAKLLREFEEAKKRFSGGEEDERLVPSLLGGGLpelglekgtLLLTEEEIRDLFDPVIDKILEL 269
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 308 TRAALTQAGVDSTKTpIYMTGGSSRIPFVQDRLGEV------GTVMTLDDPKTVVSRGAL 361
Cdd:cd10170   270 IEEQLEAKSGTPPDA-VVLVGGFSRSPYLRERLRERfgsagiIIVLRSDDPDTAVARGAA 328
ASKHA_NBD_HSP70_HscA cd10236
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscA and similar ...
9-360 7.61e-40

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscA and similar proteins; Escherichia coli HscA, also called Hsc66, acts as a chaperone involved in the maturation of iron-sulfur cluster-containing proteins. It has a low intrinsic ATPase activity which is markedly stimulated by HscB. It is involved in the maturation of IscU. Members in this subfamily belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly.


Pssm-ID: 466834 [Multi-domain]  Cd Length: 367  Bit Score: 150.44  E-value: 7.61e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   9 VDFGTSNTAAAHQSPMGREIsaLALTHRSNIMPSAVfldaphgaHAAADEEPTLlnGDSALARGRRDPSRLLLSPKRYI- 87
Cdd:cd10236     7 IDLGTTNSLVATVRSGQPEV--LPDEKGEALLPSVV--------HYGEDGKITV--GEKAKENAITDPENTISSVKRLMg 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  88 -DHDEVQLAGRSLPLtKVVGS------------------VIATVLRSGKAQ---HANQDPETVTLTHPeAWSAHSVEQ-L 144
Cdd:cd10236    75 rSLADVKEELPLLPY-RLVGDenelprfrtgagnltpveISAEILKELKQRaeeTLGGELTGAVITVP-AYFDDAQRQaT 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 145 KRSAVAAGVpeQNLRVLSEPRAAAIHYASQQsvQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDN 224
Cdd:cd10236   153 KDAARLAGL--NVLRLLNEPTAAALAYGLDQ--KKEGTIAVYDLGGGTFDISILRLS-DGVFEVLATGGDTALGGDDFDH 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 225 LLYRWVLDQLEHDDpDLADFVRSApittvhaLESSIREAKEILSDTSSATISVSTPHGETDLLITRDEFNNVIEQSIMRG 304
Cdd:cd10236   228 LLADWILKQIGIDA-RLDPAVQQA-------LLQAARRAKEALSDADSASIEVEVEGKDWEREITREEFEELIQPLVKRT 299
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1081189302 305 VELTRAALTQAGVDSTKT-PIYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA 360
Cdd:cd10236   300 LEPCRRALKDAGLEPADIdEVVLVGGSTRIPLVRQRVAEFfgREPLTSINPDEVVALGA 358
ASKHA_NBD_HSP70_HSPA1-like cd24028
nucleotide-binding domain (NBD) of the 70-kDa heat shock protein 1 (HSPA1)-like family; The ...
7-337 1.31e-36

nucleotide-binding domain (NBD) of the 70-kDa heat shock protein 1 (HSPA1)-like family; The HSPA1-like family includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM), HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3), BiP (also known as HSP70 family protein 5 /HSPA5; 70-kDa heat shock protein 5; glucose-regulated protein 78/GRP78; immunoglobulin heavy chain-binding protein), HSPA6 (also known as heat shock 70kDa protein 6; HSP70B'), HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B), HSPA8 (heat shock 70kDa protein 8, also known as Lipopolysaccharide-associated protein 1/LAP1; HSC70; HSP73; HSPA10), HSPA13 (also known as 70-kDa heat shock protein 13; STCH; microsomal stress-70 protein ATPase core; stress-70 protein chaperone microsome-associated 60 kDa protein), as well as Saccharmoyces cerevisiae Hsp70 chaperone Ssb1-2 and heat shock protein Ssa1-4. HSPA1A/1B, HSPA1L, HSPA2 and HSPA6-8 are molecular chaperones implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. They play pivotal roles in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. BiP plays a key role in protein folding and quality control in the endoplasmic reticulum lumen. It plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). HSPA13 has peptide-independent ATPase activity. All family members belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466878 [Multi-domain]  Cd Length: 376  Bit Score: 141.50  E-value: 1.31e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAA-HQSpmGR-EIsaLALTHRSNIMPSAVFLDaphgahaaaDEEptLLNGDSALARGRRDPSRLLLSPK 84
Cdd:cd24028     2 IGIDLGTTYSCVAvWRN--GKvEI--IPNDQGNRTTPSYVAFT---------DGE--RLVGEAAKNQAASNPENTIFDVK 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  85 RYI----DHDEVQLAGRSLPLtKVVGSViatvlrSGKAQ-HANQDPETVTLThPEAWSA---------------HSVEQ- 143
Cdd:cd24028    67 RLIgrkfDDPSVQSDIKHWPF-KVVEDE------DGKPKiEVTYKGEEKTFS-PEEISAmilkklkeiaeaylgRPVTKa 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 144 ---------------LKRSAVAAGVpeQNLRVLSEPRAAAIHYASQQSVQSGSHVAVFDFGGGTLDIAVLRAKGdGNFEV 208
Cdd:cd24028   139 vitvpayfndaqrqaTKDAATIAGL--NVLRIINEPTAAALAYGLDKKSSGERNVLVFDLGGGTFDVSLLSIDN-GVFEV 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 209 VAAKGDNSLGGRTIDNLLYRWVLDQLE-HDDPDLADFVRSapittVHALESSIREAKEILSDTSSATISVSTPHGETDL- 286
Cdd:cd24028   216 KATAGDTHLGGEDFDNRLVEYLVEEFKkKHGKDLRENPRA-----MRRLRSACERAKRTLSTSTSATIEIDSLYDGIDFe 290
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1081189302 287 -LITRDEFNNVIE---QSIMRGVE--LTRAALTQAGVDStktpIYMTGGSSRIPFVQ 337
Cdd:cd24028   291 tTITRAKFEELCEdlfKKCLEPVEkvLKDAKLSKDDIDE----VVLVGGSTRIPKIQ 343
hscA PRK05183
chaperone protein HscA; Provisional
145-360 1.03e-32

chaperone protein HscA; Provisional


Pssm-ID: 235360 [Multi-domain]  Cd Length: 616  Bit Score: 134.15  E-value: 1.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 145 KRSAVAAGVpeqN-LRVLSEPRAAAIHYAsqqsVQSGS--HVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRT 221
Cdd:PRK05183  169 KDAARLAGL---NvLRLLNEPTAAAIAYG----LDSGQegVIAVYDLGGGTFDISILRLS-KGVFEVLATGGDSALGGDD 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 222 IDNLLYRWVLDQLeHDDPDLADFVRSAPITTVhalessiREAKEILSDTSSATISVSTPHGEtdllITRDEFNNVIEQSI 301
Cdd:PRK05183  241 FDHLLADWILEQA-GLSPRLDPEDQRLLLDAA-------RAAKEALSDADSVEVSVALWQGE----ITREQFNALIAPLV 308
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081189302 302 MRGVELTRAALTQAGVDSTKT-PIYMTGGSSRIPFVQDRLGEV--GTVMTLDDPKTVVSRGA 360
Cdd:PRK05183  309 KRTLLACRRALRDAGVEADEVkEVVMVGGSTRVPLVREAVGEFfgRTPLTSIDPDKVVAIGA 370
ASKHA_NBD_HSP70_YegD-like cd10231
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein YegD and similar ...
7-340 3.81e-31

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein YegD and similar proteins; The family includes a group of uncharacterized proteins similar to Escherichia coli chaperone protein YegD that belongs to the heat shock protein 70 family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.


Pssm-ID: 466829 [Multi-domain]  Cd Length: 409  Bit Score: 126.23  E-value: 3.81e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAHQSpmGREISALALTHRSNIMPSAVFLDAPHgahaaADEEPTLLNGDSALARGRRDPS--RLLLSPK 84
Cdd:cd10231     1 IGLDFGTSNSSLAVAD--DGKTDLVPFEGDSPTLPSLLYFPRRE-----EEGAESIYFGNDAIDAYLNDPEegRLIKSVK 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  85 RYID---HDEVQLAGRSLPLTKVVGSVIAtVLRSGKAQHANQDPETVTLTHPEAWS-------AHSVEQLKRSAVAAGVp 154
Cdd:cd10231    74 SFLGsslFDETTIFGRRYPFEDLVAAILR-HLKRRAERQLGEEIDSVVVGRPVHFSgvgaeddAQAESRLRDAARRAGF- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 155 eQNLRVLSEPRAAAIHYAsqQSVQSGSHVAVFDFGGGTLDIAVLR---AKGDGNFEVVAAKGDnSLGGRTID-------- 223
Cdd:cd10231   152 -RNVEFQYEPIAAALDYE--QRLDREELVLVVDFGGGTSDFSVLRlgpNRTDRRADILATSGV-GIGGDDFDrelalkkv 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 224 --------------NLLY----------RWVL------DQLEHDDPDLADFVRSAP-ITTV---------HALESSIREA 263
Cdd:cd10231   228 mphlgrgstyvsgdKGLPvpawlyadlsNWHAisllytKKTLRLLLDLRRDAADPEkIERLlslvedqlgHRLFRAVEQA 307
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1081189302 264 KEILSDTSSATISVSTPHGETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDSTKTP-IYMTGGSSRIPFVQDRL 340
Cdd:cd10231   308 KIALSSADEATLSFDFIEISIKVTITRDEFETAIAFPLARILEALERTLNDAGVKPSDVDrVFLTGGSSQSPAVRQAL 385
ASKHA_NBD_HSP70_HSPA13 cd10237
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 13 (HSPA13) and similar proteins; ...
58-360 6.25e-25

nucleotide-binding domain (NBD) of heat shock 70 kDa protein 13 (HSPA13) and similar proteins; HSPA13, also called 70-kDa heat shock protein 13, STCH, microsomal stress-70 protein ATPase core, or stress-70 protein chaperone microsome-associated 60 kDa protein, has peptide-independent ATPase activity. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA13 contains an NBD but lacks an SBD. It may function to regulate cell proliferation and survival and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187.


Pssm-ID: 466835 [Multi-domain]  Cd Length: 409  Bit Score: 107.81  E-value: 6.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  58 EEPTLLNGDSALARGRRDPSRLLLSPKRYI----DHDEVQLAGRSLPLTKV------------------------VGSVI 109
Cdd:cd10237    66 PDGGVLVGYDALAQAEHNPSNTIYDAKRFIgktfTKEELEEEAKRYPFKVVndnigsaffevplngstlvvspedIGSLI 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 110 ATVLRSGKAQHANQDPETVTLTHPEAWSAHSVEQLKRSAVAAGVpeQNLRVLSEPRAAAIHYASQQsvQSG-SHVAVFDF 188
Cdd:cd10237   146 LLKLKKAAEAYLGVPVAKAVISVPAEFDEKQRNATRKAANLAGL--EVLRVINEPTAAAMAYGLHK--KSDvNNVLVVDL 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 189 GGGTLDIAVLRAKGdGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHDDPdladfvrsAPITT---VHALESSIREAKE 265
Cdd:cd10237   222 GGGTLDVSLLNVQG-GMFLTRAMAGNNHLGGQDFNQRLFQYLIDRIAKKFG--------KTLTDkedIQRLRQAVEEVKL 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 266 ILSDTSSATISVSTP-------HGETDLLITRDEFNNVIE---QSIMRGVE--LTRAALTQAGVDStktpIYMTGGSSRI 333
Cdd:cd10237   293 NLTNHNSASLSLPLQislpsafKVKFKEEITRDLFETLNEdlfQRVLEPIRqvLAEVELGKEDVDE----IVLVGGSTRI 368
                         330       340
                  ....*....|....*....|....*....
gi 1081189302 334 PFVQDRLGEV-GTVMTLD-DPKTVVSRGA 360
Cdd:cd10237   369 PRVRQLVREFfGKDPNTSvDPELAVVTGV 397
ASKHA_NBD_HSP70_HscC cd10235
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscC and similar ...
9-360 6.40e-25

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscC and similar proteins; Escherichia coli HscC, also called Hsc62, or YbeW, may act as the chaperone. It has ATPase activity. It cannot be stimulated by DnaJ. Members in this subfamily belong to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF.


Pssm-ID: 466833 [Multi-domain]  Cd Length: 343  Bit Score: 106.56  E-value: 6.40e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   9 VDFGTSNTAAAHQSPMGREISALALTHRsnIMPSAVfldaphgahaAADEEPTLLNGDSALARGRRDPSRLLLSPKRYID 88
Cdd:cd10235     3 IDLGTTNSLVAVWRDGGAELIPNALGEY--LTPSVV----------SVDEDGSILVGRAAKERLVTHPDRTAASFKRFMG 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  89 HD-EVQLAGRSLPLTKVVgsviATVLRSGKAQ---HANQDPETVTLTHPEAWSAHSVEQLKRSAVAAGVPEQnlRVLSEP 164
Cdd:cd10235    71 TDkQYRLGNHTFRAEELS----ALVLKSLKEDaeaYLGEPVTEAVISVPAYFNDEQRKATKDAGELAGLKVE--RLINEP 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 165 RAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLehddpDLADF 244
Cdd:cd10235   145 TAAALAYGLHKR-EDETRFLVFDLGGGTFDVSVLELF-EGVIEVHASAGDNFLGGEDFTHALADYFLKKH-----RLDFT 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 245 VRSApiTTVHALESSIREAKEILSDTSSATISVSTPHGETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGVD-STKTP 323
Cdd:cd10235   218 SLSP--SELAALRKRAEQAKRQLSSQDSAEIRLTYRGEELEIELTREEFEELCAPLLERLRQPIERALRDAGLKpSDIDA 295
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1081189302 324 IYMTGGSSRIPFVQDRLGEV-GTVMTLD-DPKTVVSRGA 360
Cdd:cd10235   296 VILVGGATRMPLVRQLIARLfGRLPLSSlDPDEAVALGA 334
ASKHA_NBD_HSP70_DnaK-like cd10234
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein DnaK and similar ...
158-342 5.20e-23

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein DnaK and similar proteins; This subfamily includes Escherichia coli chaperone protein DnaK (also known as heat shock 70 kDa protein/HSP70), human mitochondrial heat shock 70 kDa protein HSPA9 (also known as mitochondrial stress-70 protein; mortalin; 75 kDa glucose-regulated protein/GRP-75; HSPA9B; MOT; peptide-binding protein 74/PBP74), Saccharomyces cerevisiae stress-seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and Ssc3p (also called extracellular mutant protein 10/Ecm10), and Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p; Ssh1p; mtHSP70 homolog). They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively.


Pssm-ID: 466832 [Multi-domain]  Cd Length: 373  Bit Score: 101.40  E-value: 5.20e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQsvQSGSHVAVFDFGGGTLDIAVLRaKGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:cd10234   161 LRIINEPTAAALAYGLDK--KKDEKILVYDLGGGTFDVSILE-IGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKE 237
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DP-DLadfvRSAPIttvhALEsSIREAKE---I-LSDTSSATISV-------STP-HGETDLliTRDEFNNVIEQSIMRG 304
Cdd:cd10234   238 EGiDL----SKDKM----ALQ-RLKEAAEkakIeLSSVLETEINLpfitadaSGPkHLEMKL--TRAKFEELTEDLVERT 306
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1081189302 305 VELTRAALTQAGVDSTK-TPIYMTGGSSRIPFVQDRLGE 342
Cdd:cd10234   307 IEPVEQALKDAKLSPSDiDEVILVGGSTRMPAVQELVKE 345
PRK13411 PRK13411
molecular chaperone DnaK; Provisional
158-371 7.00e-23

molecular chaperone DnaK; Provisional


Pssm-ID: 184039 [Multi-domain]  Cd Length: 653  Bit Score: 103.68  E-value: 7.00e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSVQSgSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQ-LEH 236
Cdd:PRK13411  164 LRIINEPTAAALAYGLDKQDQE-QLILVFDLGGGTFDVSILQL-GDGVFEVKATAGNNHLGGDDFDNCIVDWLVENfQQQ 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 237 DDPDLadfvrSAPITTVHALESSIREAKEILSDTSSATISV-------STP-HGETDLliTRDEFNNVIEQSImrgvELT 308
Cdd:PRK13411  242 EGIDL-----SQDKMALQRLREAAEKAKIELSSMLTTSINLpfitadeTGPkHLEMEL--TRAKFEELTKDLV----EAT 310
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081189302 309 RAALTQAGVDSTKTP-----IYMTGGSSRIPFVQDRLGEVGTVMTLD---DPKTVVSRGalAATLRGFTGG 371
Cdd:PRK13411  311 IEPMQQALKDAGLKPedidrVILVGGSTRIPAVQEAIQKFFGGKQPDrsvNPDEAVALG--AAIQAGVLGG 379
hscA PRK01433
chaperone protein HscA; Provisional
7-360 1.94e-22

chaperone protein HscA; Provisional


Pssm-ID: 234955 [Multi-domain]  Cd Length: 595  Bit Score: 102.24  E-value: 1.94e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAHQSpmGREISALALTHRSNIMPSAVFLDaphgahaaaDEEPTLLNGdsalaRGRRDPSRL------- 79
Cdd:PRK01433   22 VGIDFGTTNSLIAIAT--NRKVKVIKSIDDKELIPTTIDFT---------SNNFTIGNN-----KGLRSIKRLfgktlke 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  80 -LLSP------KRYID--HDEVQL--AGRSLPLTKVVGSVIaTVLRSGKAQHANQDPETVTLTHPEAWSAHSVEQLKRSA 148
Cdd:PRK01433   86 iLNTPalfslvKDYLDvnSSELKLnfANKQLRIPEIAAEIF-IYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 149 VAAGVpeQNLRVLSEPRAAAIHYASQQSvQSGSHVaVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLYR 228
Cdd:PRK01433  165 KIAGF--EVLRLIAEPTAAAYAYGLNKN-QKGCYL-VYDLGGGTFDVSILNIQ-EGIFQVIATNGDNMLGGNDIDVVITQ 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 229 WVLDQLehDDPDLADFVRSApittvhalessiREAKEILSDTSSatisvstpHGETDLLITRDEFNNVIEQSIMRGVELT 308
Cdd:PRK01433  240 YLCNKF--DLPNSIDTLQLA------------KKAKETLTYKDS--------FNNDNISINKQTLEQLILPLVERTINIA 297
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1081189302 309 RAALTQAGVDSTKTpIYMTGGSSRIPFVQDRLGEVGTVMTLDD--PKTVVSRGA 360
Cdd:PRK01433  298 QECLEQAGNPNIDG-VILVGGATRIPLIKDELYKAFKVDILSDidPDKAVVWGA 350
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
158-367 2.68e-22

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 101.57  E-value: 2.68e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLrAKGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:pfam00012 164 LRIVNEPTAAALAYGLDKT-DKERNIAVYDLGGGTFDVSIL-EIGRGVFEVKATNGDTHLGGEDFDLRLVDHLAEEFKKK 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 -DPDLADFVRSapittVHALESSIREAKEILSDTSSAT----ISVSTPHGETDLLITRDEFNNVIEQSIMRGVELTRAAL 312
Cdd:pfam00012 242 yGIDLSKDKRA-----LQRLREAAEKAKIELSSNQTNInlpfITAMADGKDVSGTLTRAKFEELVADLFERTLEPVEKAL 316
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081189302 313 TQAGVDstKTPIY---MTGGSSRIPFVQDRLGEvgtvMTLDDPKT------VVSRGA--LAATLRG 367
Cdd:pfam00012 317 KDAGLS--KSEIDevvLVGGSTRIPAVQELVKE----FFGKEPSKgvnpdeAVAIGAavQAGVLSG 376
ASKHA_NBD_HSP70_HSPA14 cd10238
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 14 (HSPA14) and similar proteins; ...
118-360 3.41e-22

nucleotide-binding domain (NBD) of heat shock 70 kDa protein 14 (HSPA14) and similar proteins; HSPA14, also called HSP70-like protein 1 (Hsp70L1), or heat shock protein HSP60, is a component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, HSPA14 binds to the nascent polypeptide chain, while DNAJC2 stimulates its ATPase activity. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis.


Pssm-ID: 466836 [Multi-domain]  Cd Length: 377  Bit Score: 99.24  E-value: 3.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 118 AQHANQ-DPETVTLTHPEAWSAHSVEQLKRSAVAAGVpeQNLRVLSEPRAAAIHYASQQSVQSG-SHVAVFDFGGGTLDI 195
Cdd:cd10238   127 AQSHGGsDVIDVVLTVPLDFDEDQRNALKEAAEKAGF--NVLRVISEPSAAALAYGIGQDDPTEnSNVLVYRLGGTSLDV 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 196 AVLRAKGdGNFEVVAAKGDNSLGGRTIDNLLyrwvldqLEHddpdLAD-FVRSAPIT------TVHALESSIREAKEILS 268
Cdd:cd10238   205 TVLSVNN-GMYRVLATRTDDNLGGDDFTEAL-------AEH----LASeFKRQWKQDvrenkrAMAKLMNAAEVCKHVLS 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 269 DTSSATISVSTPHGETDL--LITRDEFNNVIEQSIMRGVELTRAALTQAGVDSTK-TPIYMTGGSSRIP----FVQDRLG 341
Cdd:cd10238   273 TLNTATCSVESLYDGMDFqcNVSRARFESLCSSLFQQCLEPIQEVLNSAGLTKEDiDKVILCGGSSRIPklqqLIKDLFP 352
                         250
                  ....*....|....*....
gi 1081189302 342 EVgTVMTLDDPKTVVSRGA 360
Cdd:cd10238   353 SA-EVLSSIPPDEVIAIGA 370
ASKHA_NBD_HSP70_Ssb cd24093
nucleotide-binding domain (NBD) of Saccharmoyces cerevisiae Hsp70 chaperone Ssb and similar ...
53-360 7.62e-21

nucleotide-binding domain (NBD) of Saccharmoyces cerevisiae Hsp70 chaperone Ssb and similar proteins; Ssb is ribosome-bound, Hsp70-type chaperone that assists in the co-translational folding of newly synthesized proteins in the cytosol. It stimulates folding by interacting with nascent chains, binding to short, largely hydrophobic sequences exposed by unfolded proteins, thereby stabilizing longer, more slowly translated, and aggregation-prone nascent polypeptides and domains that cannot fold stably until fully synthesized. Ssb cooperates with a specific Hsp40/Hsp70 co-chaperone termed the ribosome-associated complex (RAC), which stimulates the ATPase activity of the ribosome-associated pool of Ssbs and switches it to the high affinity substrate binding state. Saccharmoyces cerevisiae Ssb are encoded by two genes, SSB1 and SSB2. Ssb1p is also known as cold-inducible protein YG101. Members in this subfamily belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466943 [Multi-domain]  Cd Length: 375  Bit Score: 95.05  E-value: 7.62e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  53 HAAADEEPTLLNGDSALARGRRDPS---RLLLSPKRYIDHD-----EVQLAGRSLPLT-KVVGSVIATVLRSGKAQHANQ 123
Cdd:cd24093    52 QAALNPRNTVFDAKRLIGRRFDDESvqkDMKTWPFKVIDVNgnpviEVQYLGETKTFSpQEISAMVLTKMKEIAEAKIGK 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 124 DPETVTLTHPEAWSAHSVEQLKRSAVAAGVpeQNLRVLSEPRAAAIHYA-SQQSVQSGSHVAVFDFGGGTLDIAVLRAKG 202
Cdd:cd24093   132 KVEKAVITVPAYFNDAQRQATKDAGAIAGL--NVLRIINEPTAAAIAYGlGAGKSEKERHVLIFDLGGGTFDVSLLHIAG 209
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 203 dGNFEVVAAKGDNSLGGRTID-NLLYRWVLDQLEHDDPDLADFVRSapittVHALESSIREAKEILSDTSSATISV-STP 280
Cdd:cd24093   210 -GVYTVKSTSGNTHLGGQDFDtNLLEHFKAEFKKKTGLDISDDARA-----LRRLRTAAERAKRTLSSVTQTTVEVdSLF 283
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 281 HGET-DLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDSTKT-PIYMTGGSSRIPFVQDRLGEVGTVMTLD---DPKTV 355
Cdd:cd24093   284 DGEDfESSITRARFEDLNAALFKSTLEPVEQVLKDAKISKSQIdEVVLVGGSTRIPKVQKLLSDFFDGKQLEksiNPDEA 363

                  ....*
gi 1081189302 356 VSRGA 360
Cdd:cd24093   364 VAYGA 368
dnaK CHL00094
heat shock protein 70
158-338 3.06e-20

heat shock protein 70


Pssm-ID: 214360 [Multi-domain]  Cd Length: 621  Bit Score: 95.18  E-value: 3.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQsvQSGSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:CHL00094  166 LRIINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEV-GDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKK 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DP-DLadfvrSAPITTVHALESSIREAKEILSDTSSATISV----STPHG--ETDLLITRDEFNNVIEQSIMRGVELTRA 310
Cdd:CHL00094  243 EGiDL-----SKDRQALQRLTEAAEKAKIELSNLTQTEINLpfitATQTGpkHIEKTLTRAKFEELCSDLINRCRIPVEN 317
                         170       180
                  ....*....|....*....|....*....
gi 1081189302 311 ALTQAGVDSTK-TPIYMTGGSSRIPFVQD 338
Cdd:CHL00094  318 ALKDAKLDKSDiDEVVLVGGSTRIPAIQE 346
PRK13410 PRK13410
molecular chaperone DnaK; Provisional
126-360 3.64e-20

molecular chaperone DnaK; Provisional


Pssm-ID: 184038 [Multi-domain]  Cd Length: 668  Bit Score: 95.08  E-value: 3.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 126 ETVT---LTHPeAWSAHSVEQLKRSA-VAAGVpeQNLRVLSEPRAAAIHYA-SQQSVQSgshVAVFDFGGGTLDIAVLRA 200
Cdd:PRK13410  133 EPVTgavITVP-AYFNDSQRQATRDAgRIAGL--EVERILNEPTAAALAYGlDRSSSQT---VLVFDLGGGTFDVSLLEV 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 201 kGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQ-LEHDDPDL-ADfvRSAPITTVHALEssirEAKEILSDTSSATISV- 277
Cdd:PRK13410  207 -GNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQfLEKEGIDLrRD--RQALQRLTEAAE----KAKIELSGVSVTDISLp 279
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 278 ---STPHG----ETDLliTRDEFNNVIEQSIMRGVELTRAALTQAGVdstkTP-----IYMTGGSSRIPFVQDRlgeVGT 345
Cdd:PRK13410  280 fitATEDGpkhiETRL--DRKQFESLCGDLLDRLLRPVKRALKDAGL----SPedideVVLVGGSTRMPMVQQL---VRT 350
                         250       260
                  ....*....|....*....|
gi 1081189302 346 VMTLD-----DPKTVVSRGA 360
Cdd:PRK13410  351 LIPREpnqnvNPDEVVAVGA 370
ASKHA_NBD_HSP70_Ssc1_3 cd11734
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae mitochondrial heat shock protein ...
158-338 6.19e-19

nucleotide-binding domain (NBD) of Saccharomyces cerevisiae mitochondrial heat shock protein Ssc1p and Ssc3p and similar proteins; This subgroup includes Saccharomyces cerevisiae Stress-Seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and sc3p (also called extracellular mutant protein 10/Ecm10). Ssc1p is an essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. It constitutes the ATP-driven core of the motor and binds the precursor preprotein. It is required for the import of the processed frataxin homolog YFH1 into the mitochondrion. Ssc1p also acts as a non-catalytic component of endonuclease SceI (endo.SceI), which cleaves specifically at multiple sites on mitochondrial DNA and produces double-stranded breaks. Ssc1p confers broader sequence specificity, greater stability, and higher activity on the catalytic subunit. Ssc3p plays a role in facilitating the assembly of some protein complexes inside the mitochondria. It may initiate the events that lead to refolding of imported precursors in the matrix space.


Pssm-ID: 466840 [Multi-domain]  Cd Length: 378  Bit Score: 89.43  E-value: 6.19e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvqSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:cd11734   165 LRVINEPTAAALAYGLDKS--GDKVIAVYDLGGGTFDISILEIQ-KGVFEVKSTNGDTHLGGEDFDIALVRHIVSEFKKE 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DP-DLADfVRSApittVHALESSIREAKEILSDTSSATISV-------STPHgETDLLITRDEFNNVIEQSIMRGVELTR 309
Cdd:cd11734   242 SGiDLSK-DRMA----IQRIREAAEKAKIELSSTLQTDINLpfitadaSGPK-HINMKLTRAQFESLVKPLVDRTVEPCK 315
                         170       180       190
                  ....*....|....*....|....*....|
gi 1081189302 310 AALTQAGVDSTK-TPIYMTGGSSRIPFVQD 338
Cdd:cd11734   316 KALKDAGVKTSEiNEVILVGGMSRMPKVQE 345
ASKHA_NBD_HSP70_HSPA1 cd10233
nucleotide-binding domain (NBD) of 70-kDa heat shock protein 1 (HSPA1) and similar proteins; ...
158-337 2.31e-18

nucleotide-binding domain (NBD) of 70-kDa heat shock protein 1 (HSPA1) and similar proteins; This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM), HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3), HSPA6 (also known as heat shock 70kDa protein 6; HSP70B'), HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B), and HSPA8 (heat shock 70kDa protein 8, also known as Lipopolysaccharide-associated protein 1/LAP1; HSC70; HSP73; HSPA10). They are molecular chaperones implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. They play pivotal roles in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis and ADP release, mediated by co-chaperones. The subfamily also includes Saccharomyces cerevisiae heat shock protein Ssa1-4, which may play a role in the transport of polypeptides both across the mitochondrial membranes and into the endoplasmic reticulum. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466831 [Multi-domain]  Cd Length: 375  Bit Score: 87.68  E-value: 2.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSVQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:cd10233   165 LRIINEPTAAAIAYGLDKKGKGERNVLIFDLGGGTFDVSLLTIE-DGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRK 243
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 D-PDLADFVRSapittVHALESSIREAKEILSDTSSATISVSTPHGETDLL--ITR---DEFNNVIEQSIMRGVEltrAA 311
Cdd:cd10233   244 HkKDISGNPRA-----LRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYtsITRarfEELCADLFRSTLEPVE---KV 315
                         170       180
                  ....*....|....*....|....*..
gi 1081189302 312 LTQAGVDSTKT-PIYMTGGSSRIPFVQ 337
Cdd:cd10233   316 LRDAKLDKSQIhEIVLVGGSTRIPKVQ 342
ASKHA_NBD_HSP70_HSPA9 cd11733
nucleotide-binding domain (NBD) of human mitochondrial heat shock 70 kDa protein 9 (HSPA9) and ...
158-338 3.26e-18

nucleotide-binding domain (NBD) of human mitochondrial heat shock 70 kDa protein 9 (HSPA9) and similar proteins; This subgroup includes human mitochondrial HSPA9 (also known as mitochondrial stress-70 protein; mortalin; 75 kDa glucose-regulated protein/GRP-75; HSPA9B; MOT; peptide-binding protein 74/PBP74). It acts as a chaperone protein which plays an important role in mitochondrial iron-sulfur cluster (ISC) biogenesis. It interacts with and stabilizes ISC cluster assembly proteins FXN, NFU1, NFS1 and ISCU. HSPA9 regulates erythropoiesis via stabilization of ISC assembly. It may play a role in the control of cell proliferation and cellular aging. Members in this subgroup belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466839 [Multi-domain]  Cd Length: 377  Bit Score: 86.93  E-value: 3.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvqSGSHVAVFDFGGGTLDIAVLRAKGdGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:cd11733   165 LRIINEPTAAALAYGLDKK--DDKIIAVYDLGGGTFDISILEIQK-GVFEVKATNGDTFLGGEDFDNALLNYLVAEFKKE 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DP-DLAdfvrsapiTTVHALEsSIREAKEI----LSDTSSATISV-------STP-HgeTDLLITRDEFNNVIEQSIMRG 304
Cdd:cd11733   242 QGiDLS--------KDNLALQ-RLREAAEKakieLSSSLQTDINLpfitadaSGPkH--LNMKLTRAKFESLVGDLIKRT 310
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1081189302 305 VELTRAALTQAGVDSTK-TPIYMTGGSSRIPFVQD 338
Cdd:cd11733   311 VEPCKKCLKDAGVSKSDiGEVLLVGGMTRMPKVQE 345
dnaK PRK00290
molecular chaperone DnaK; Provisional
158-338 1.35e-17

molecular chaperone DnaK; Provisional


Pssm-ID: 234715 [Multi-domain]  Cd Length: 627  Bit Score: 86.69  E-value: 1.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQsvQSGSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:PRK00290  164 LRIINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEI-GDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKE 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DP-DLadfvRSAPIttvhALEsSIREAKE---I-LSDTSSATISV-------STP-HGETDLliTRDEFNNVIEQSIMRG 304
Cdd:PRK00290  241 NGiDL----RKDKM----ALQ-RLKEAAEkakIeLSSAQQTEINLpfitadaSGPkHLEIKL--TRAKFEELTEDLVERT 309
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1081189302 305 VELTRAALTQAGVDSTK-TPIYMTGGSSRIPFVQD 338
Cdd:PRK00290  310 IEPCKQALKDAGLSVSDiDEVILVGGSTRMPAVQE 344
ASKHA_NBD_HSP70_HSPA12 cd10229
nucleotide-binding domain (NBD) of heat shock 70 kDa proteins HSPA12A, HSPA12B and similar ...
8-360 3.24e-17

nucleotide-binding domain (NBD) of heat shock 70 kDa proteins HSPA12A, HSPA12B and similar proteins; The family includes heat shock 70 kDa proteins HSPA12A and HSPA12B. HSPA12A is an adapter protein for SORL1, but not SORT1. It delays SORL1 internalization and affects SORL1 subcellular localization. HSPA12B, predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. Both HSPA12A and HSPA12B belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A and HSPA12B.


Pssm-ID: 466827 [Multi-domain]  Cd Length: 372  Bit Score: 83.87  E-value: 3.24e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   8 AVDFGTSNTAAA---HQSPMGREISALALTHRSNIM----PSAVFLDAPHGAHA---AADEEPTLLNGDSALARGRRDPS 77
Cdd:cd10229     4 AIDFGTTYSGYAysfITDPGDIHTMYNWWGAPTGVSspktPTCLLLNPDGEFHSfgyEAREKYSDLAEDEEHQWLYFFKF 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  78 RLLLSPKRYIDHDEVQLA--GRSLPLTKVVGSVI----ATVLRSGKAQHANQ-DPETVT--LTHPEAWSAHSVEQLKRSA 148
Cdd:cd10229    84 KMMLLSEKELTRDTKVKAvnGKSMPALEVFAEALrylkDHALKELRDRSGSSlDEDDIRwvLTVPAIWSDAAKQFMREAA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 149 VAAGVP----EQNLRVLSEPRAAAIHY----ASQQSVQ--SGSHVAVFDFGGGTLDIAVLRAKGDGNFEVVAAKGDNSLG 218
Cdd:cd10229   164 VKAGLIseenSEQLIIALEPEAAALYCqkllAEGEEKElkPGDKYLVVDCGGGTVDITVHEVLEDGKLEELLKASGGPWG 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 219 GRTIDNLLYRWVLDQLehDDPDLADFVRSAPITTVhalessireakEILSDTSSATISvstphgeTDLLITRDEFNNVIE 298
Cdd:cd10229   244 STSVDEEFEELLEEIF--GDDFMEAFKQKYPSDYL-----------DLLQAFERKKRS-------FKLRLSPELMKSLFD 303
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081189302 299 QSIMRGVELTRAALTQAGVDSTKTpIYMTGGSSRIPFVQDRL----GEVGTVMTLDDPKTVVSRGA 360
Cdd:cd10229   304 PVVKKIIEHIKELLEKPELKGVDY-IFLVGGFAESPYLQKAVkeafSTKVKIIIPPEPGLAVVKGA 368
ASKHA_NBD_HSP70_HSP105-110-like cd11732
nucleotide-binding domain (NBD) of the 105/110 kDa heat shock protein family; The 105/110 kDa ...
148-363 4.79e-17

nucleotide-binding domain (NBD) of the 105/110 kDa heat shock protein family; The 105/110 kDa heat shock proteins family includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4; APG-2; HS24/P52; hsp70 RY; HSPH2), HSPA4L (also known as 70-kDa heat shock protein 4-like; APG-1; HSPH3; OSP94), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1; HSP105; HSP105A; HSP105B; NY-CO-25), Saccharomyces cerevisiae Sse1p, Sse2p and a sea urchin sperm receptor. They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466838 [Multi-domain]  Cd Length: 377  Bit Score: 83.38  E-value: 4.79e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 148 AVAAGVPeqNLRVLSEPRAAAIHY-----ASQQSVQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTI 222
Cdd:cd11732   157 AEIAGLN--CLRLINETTAAALDYgiyksDLLESEEKPRIVAFVDMGHSSTQVSIAAFT-KGKLKVLSTAFDRNLGGRDF 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 223 DNLLYRWVLDQLE---HDDPdladfvrSAPITTVHALESSIREAKEILSDTSSATISVSTPHGETDL--LITRDEFNNVI 297
Cdd:cd11732   234 DRALVEHFAEEFKkkyKIDP-------LENPKARLRLLDACEKLKKVLSANGEAPLNVECLMEDIDFsgQIKREEFEELI 306
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081189302 298 EQSIMRGVELTRAALTQAGVDSTK-TPIYMTGGSSRIPFVQDRLGEvgtVMTLDDPKTV-----VSRG-ALAA 363
Cdd:cd11732   307 QPLLARLEAPIKKALAQAGLTKEDlHSVEIVGGGTRVPAVKEAIAE---VFGKDLSTTLnadeaVARGcALQA 376
ASKHA_NBD_HSP70_HYOU1 cd10230
nucleotide-binding domain (NBD) of hypoxia up-regulated protein 1 (HYOU1) and similar proteins; ...
7-343 6.15e-17

nucleotide-binding domain (NBD) of hypoxia up-regulated protein 1 (HYOU1) and similar proteins; This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, 170 kDa glucose-regulated protein/GRP170; HSP12A; 150 kDa oxygen-regulated protein/ORP150; GRP-170; ORP-150) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. It may play a role as a molecular chaperone and participate in protein folding. HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (also known as BiP, Grp78 or HspA5) and may also act as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. Members in this subgroup belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466828 [Multi-domain]  Cd Length: 353  Bit Score: 82.93  E-value: 6.15e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAHQSPmGREISaLAL---THRSniMPSAVFLDaphgahaaaDEEPTLlnGDSALARGRRDPSRLLLSP 83
Cdd:cd10230     3 LGIDLGSEFIKVALVKP-GVPFE-IVLneeSKRK--TPSAVAFR---------NGERLF--GDDALALATRFPENTFSYL 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  84 KRyidhdevqLAGRSlpltkvVGSVIATVLRSGK---AQHANQDPETVTLTHPEAWSAHSVEQLKRSAVAAGvpeqnLRV 160
Cdd:cd10230    68 KD--------LLGYS------VEELVAMILEYAKslaESFAGEPIKDAVITVPPFFTQAQRQALLDAAEIAG-----LNV 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 161 LS---EPRAAAIHYASQQSVQSGS--HVAVFDFGGGTLDIAVLR-----------AKGDGNFEVVAAKGDNSLGGRTIDN 224
Cdd:cd10230   129 LSlinDNTAAALNYGIDRRFENNEpqNVLFYDMGASSTSATVVEfssvkekdkgkNKTVPQVEVLGVGWDRTLGGLEFDL 208
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 225 LLYrwvldqlEHddpdLAD-FVR----SAPITTVH-ALESSIREA---KEILSDTSSATISVSTPHGETDL--LITRDEF 293
Cdd:cd10230   209 RLA-------DH----LADeFNEkhkkDKDVRTNPrAMAKLLKEAnrvKEVLSANTEAPASIESLYDDIDFrtKITREEF 277
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1081189302 294 NNVIEQSIMRGVELTRAALTQAG-----VDStktpIYMTGGSSRIPFVQDRLGEV 343
Cdd:cd10230   278 EELCADLFERVVAPIEEALEKAGltlddIDS----VELIGGGTRVPKVQEALKEA 328
PTZ00186 PTZ00186
heat shock 70 kDa precursor protein; Provisional
158-372 1.38e-16

heat shock 70 kDa precursor protein; Provisional


Pssm-ID: 140213 [Multi-domain]  Cd Length: 657  Bit Score: 83.58  E-value: 1.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvqSGSHVAVFDFGGGTLDIAVLRAKGdGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQlehd 237
Cdd:PTZ00186  191 IRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEIAG-GVFEVKATNGDTHLGGEDFDLALSDYILEE---- 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 dpdladFVRSAPITTVH---ALEsSIREAKEI----LSDTSSATISVSTPHGETD------LLITRDEFNNVIEQSIMRG 304
Cdd:PTZ00186  264 ------FRKTSGIDLSKermALQ-RVREAAEKakceLSSAMETEVNLPFITANADgaqhiqMHISRSKFEGITQRLIERS 336
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081189302 305 VELTRAALTQAGVDSTK-TPIYMTGGSSRIPFVQDrlgEVGTVMTLD-----DPKTVVSRGA--LAATLRGFTGGV 372
Cdd:PTZ00186  337 IAPCKQCMKDAGVELKEiNDVVLVGGMTRMPKVVE---EVKKFFQKDpfrgvNPDEAVALGAatLGGVLRGDVKGL 409
PTZ00009 PTZ00009
heat shock 70 kDa protein; Provisional
158-337 1.49e-15

heat shock 70 kDa protein; Provisional


Pssm-ID: 240227 [Multi-domain]  Cd Length: 653  Bit Score: 80.61  E-value: 1.49e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSVQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLyrwvldqLEHD 237
Cdd:PTZ00009  171 LRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIE-DGIFEVKATAGDTHLGGEDFDNRL-------VEFC 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DPDLADFVRSAPITTVH----ALESSIREAKEILSDTSSATISVSTPHGETD--LLITRDEFNNVIEQSIMRGVELTRAA 311
Cdd:PTZ00009  243 VQDFKRKNRGKDLSSNQralrRLRTQCERAKRTLSSSTQATIEIDSLFEGIDynVTISRARFEELCGDYFRNTLQPVEKV 322
                         170       180
                  ....*....|....*....|....*..
gi 1081189302 312 LTQAGVDSTKT-PIYMTGGSSRIPFVQ 337
Cdd:PTZ00009  323 LKDAGMDKRSVhEVVLVGGSTRIPKVQ 349
ASKHA_NBD_HSP70_BiP cd10241
nucleotide-binding domain (NBD) of binding-immunoglobulin protein (BiP) and similar proteins; ...
158-342 1.60e-15

nucleotide-binding domain (NBD) of binding-immunoglobulin protein (BiP) and similar proteins; This subfamily includes human BiP (also known as HSP70 family protein 5 /HSPA5; 70-kDa heat shock protein 5; glucose-regulated protein 78/GRP78; immunoglobulin heavy chain-binding protein), Sacchaormyces cerevisiae BiP (also known as Grp78p), Arabidopsis thaliana BiP1-3 (also known as luminal-binding protein 1-3) and related proteins. BiP plays a key role in protein folding and quality control in the endoplasmic reticulum lumen. It plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). BiP may function as an allosteric modulator for SEC61 channel-forming translocon complex, likely cooperating with SEC62 to enable the productive insertion of these precursors into SEC61 channel. It appears to specifically regulate translocation of precursors having inhibitory residues in their mature region that weaken channel gating. BiP may also play a role in apoptosis and cell proliferation. Plant BiP may be required for pollen development and pollen tube growth. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466837 [Multi-domain]  Cd Length: 376  Bit Score: 78.79  E-value: 1.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvQSGSHVAVFDFGGGTLDIAVLrAKGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:cd10241   167 LRIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLL-TIDNGVFEVLATNGDTHLGGEDFDQRVMDHFIKLFKKK 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 -DPDLADFVRSapittVHALESSIREAKEILSDTSSATISVSTPHGETDL--LITR---DEFNNVIEQSIMRGVE--LTR 309
Cdd:cd10241   245 tGKDISKDKRA-----VQKLRREVEKAKRALSSQHQARIEIESLFDGEDFseTLTRakfEELNMDLFRKTLKPVQkvLED 319
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1081189302 310 AALTQAGVDStktpIYMTGGSSRIPFVQDRLGE 342
Cdd:cd10241   320 AGLKKSDIDE----IVLVGGSTRIPKVQQLLKD 348
PLN03184 PLN03184
chloroplast Hsp70; Provisional
158-360 2.01e-15

chloroplast Hsp70; Provisional


Pssm-ID: 215618 [Multi-domain]  Cd Length: 673  Bit Score: 79.89  E-value: 2.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQsvQSGSHVAVFDFGGGTLDIAVLRAkGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:PLN03184  203 LRIINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEV-GDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKD 279
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DPdlADFVRSApiTTVHALESSIREAKEILSDTSSATISV----STPHG--ETDLLITRDEFNNVIEQSIMR---GVE-- 306
Cdd:PLN03184  280 EG--IDLLKDK--QALQRLTEAAEKAKIELSSLTQTSISLpfitATADGpkHIDTTLTRAKFEELCSDLLDRcktPVEna 355
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1081189302 307 LTRAALTQAGVDStktpIYMTGGSSRIPFVQD---RLGEVGTVMTLdDPKTVVSRGA 360
Cdd:PLN03184  356 LRDAKLSFKDIDE----VILVGGSTRIPAVQElvkKLTGKDPNVTV-NPDEVVALGA 407
ASKHA_NBD_HSP70_ScSsz1p-like cd10232
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae ribosome-associated complex ...
130-360 1.70e-14

nucleotide-binding domain (NBD) of Saccharomyces cerevisiae ribosome-associated complex subunit Ssz1 and similar proteins; Ssz1, also called DnaK-related protein Ssz1, heat shock protein 70 homolog Ssz1, or pleiotropic drug resistance protein 13 (PDR13), is a component of the ribosome-associated complex (RAC), a heterodimeric chaperone complex involved in regulation of accurate translation termination and in folding or maintaining nascent polypeptides in a folding-competent state. RAC stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones Ssb1/Ssb2 that bind to the nascent polypeptide chain. Ssz1 is required for Zuo1 to function efficiently as a J-protein for Ssb1/Ssb2. It is also involved in pleiotropic drug resistance by post-translational activation of transcription factor PDR1. Members in this subfamily belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis.


Pssm-ID: 466830 [Multi-domain]  Cd Length: 349  Bit Score: 75.48  E-value: 1.70e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 130 LTHPEAWSAHSVEQLKRSAVAAGVPEqnLRVLSEPRAAAIHYASQQ----SVQSGSHVAVFDFGGGTLDIAVLRAKGdGN 205
Cdd:cd10232   106 LSVPTDFTEKQKAALVAAAAAAGLEV--LQLIPEPAAAALAYDLRAetsgDTIKDKTVVVADLGGTRSDVTVVAVRG-GL 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 206 FEVVAAKGDNSLGGRTIDNLLYRWVLDqlehddpdlaDFVRSAPITTVHALES--SIREAKEI----LSDTSSATISVST 279
Cdd:cd10232   183 YTILATVHDYELGGVALDDVLVGHFAK----------EFKKKTKTDPRKNARSlaKLRNAAEItkraLSQGTSAPCSVES 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 280 PHGETD--LLITRDEFNNVIEQSIMRGVELTRAALTQAGVDSTK-TPIYMTGGSSRIPFVQDRLGEV-----GTVMTLD- 350
Cdd:cd10232   253 LADGIDfhSSINRTRYELLASKVFQQFADLVTDAIEKAGLDPLDiDEVLLAGGASRTPKLASNFEYLfpestIIRAPTQi 332
                         250
                  ....*....|
gi 1081189302 351 DPKTVVSRGA 360
Cdd:cd10232   333 NPDELIARGA 342
PTZ00400 PTZ00400
DnaK-type molecular chaperone; Provisional
158-338 2.43e-11

DnaK-type molecular chaperone; Provisional


Pssm-ID: 240403 [Multi-domain]  Cd Length: 663  Bit Score: 66.77  E-value: 2.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQSvqSGSHVAVFDFGGGTLDIAVLRAKGdGNFEVVAAKGDNSLGGRTIDNLLYRWVLDQLEHD 237
Cdd:PTZ00400  205 LRIINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEILG-GVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQ 281
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 238 DP-DLadfvrSAPITTVHALESSIREAKEILSDTSSATISV----STPHGETDLLI--TRDEFNNVIEQSIMRGVELTRA 310
Cdd:PTZ00400  282 QGiDL-----KKDKLALQRLREAAETAKIELSSKTQTEINLpfitADQSGPKHLQIklSRAKLEELTHDLLKKTIEPCEK 356
                         170       180
                  ....*....|....*....|....*....
gi 1081189302 311 ALTQAGVDSTK-TPIYMTGGSSRIPFVQD 338
Cdd:PTZ00400  357 CIKDAGVKKDElNDVILVGGMTRMPKVSE 385
ASKHA_NBD_HSP70_ScSse cd24094
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae heat shock protein homolog Sse and ...
158-360 3.82e-11

nucleotide-binding domain (NBD) of Saccharomyces cerevisiae heat shock protein homolog Sse and similar proteins; The subgroup includes two Saccharomyces cerevisiae heat shock protein homologs, Sse1 and Sse2. They may have calcium-dependent calmodulin-binding activities. Both Sse1 and Sse2 belong to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466944 [Multi-domain]  Cd Length: 385  Bit Score: 65.47  E-value: 3.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYASQQS-----VQSGSHVAVFDFGGGTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLyrwvLD 232
Cdd:cd24094   164 LRLMNDTTAAALGYGITKTdlpepEEKPRIVAFVDIGHSSYTVSIVAFK-KGQLTVKGTAYDRHFGGRDFDKAL----TD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 233 QL--EHDDPDLADfVRSAPITTVHaLESSIREAKEILSDTSSATISVSTPHGETDL--LITRDEFNNVIEQSIMRGVELT 308
Cdd:cd24094   239 HFadEFKEKYKID-VRSNPKAYFR-LLAAAEKLKKVLSANAQAPLNVESLMNDIDVssMLKREEFEELIAPLLERVTAPL 316
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 309 RAALTQAGVdsTKTPIY---MTGGSSRIPFVQDRL-----GEVGTVMTLDDpktVVSRGA 360
Cdd:cd24094   317 EKALAQAGL--TKDEIDfveLVGGTTRVPALKESIsaffgKPLSTTLNQDE---AVARGA 371
ASKHA_NBD_HSP70_AtHsp70-14-like cd24095
nucleotide-binding domain (NBD) of Arabidopsis thaliana heat shock 70 kDa protein 14-16 and ...
65-360 2.14e-10

nucleotide-binding domain (NBD) of Arabidopsis thaliana heat shock 70 kDa protein 14-16 and similar proteins; The subgroup includes Arabidopsis thaliana Hsp70-14, also known as heat shock 70 kDa protein 14; heat shock protein 91), Hsp70-15 (also known as heat shock 70 kDa protein 15), and Hsp70-16 (also known as heat shock 70 kDa protein 16). In cooperation with other chaperones, they are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions. Members in this subgroup belong to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466945 [Multi-domain]  Cd Length: 389  Bit Score: 63.10  E-value: 2.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  65 GDSALARGRRDPSRLLLSPKRYI----DHDEVQLAGRSLPLTKVVGS---------------------VIATVLRSGK-- 117
Cdd:cd24095    49 GEAAAASILMNPKNTISQLKRLIgrkfDDPEVQRDLKLFPFKVTEGPdgeiginvnylgeqkvftpeqILAMLLSNLKri 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 118 AQHANQDPET-VTLTHPEAWSahsveQLKRSAV--AAGVPEQN-LRVLSEPRAAAIHYA---SQQSVQSGSHVAVFDFGG 190
Cdd:cd24095   129 AEKNLKTPVTdCVISVPVYFT-----DAQRRAMldAAQIAGLNcLRLMNETTATALAYGiykTDLPETDPTNVVFVDVGH 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 191 GTLDIAVLRAKgDGNFEVVAAKGDNSLGGRTIDNLLY---------RWVLDqlehddpdladfVRSAPiTTVHALESSIR 261
Cdd:cd24095   204 SSTQVCVVAFK-KGQLKVLSHAFDRNLGGRDFDEVLFdhfaaefkeKYKID------------VKSNK-KASLRLRAACE 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 262 EAKEILSDTSSATISVSTPHGETDL--LITRDEFNNVIEQSIMRGVELTRAALTQAGVdsTKTPIYM---TGGSSRIPFV 336
Cdd:cd24095   270 KVKKILSANPEAPLNIECLMEDKDVkgMITREEFEELAAPLLERLLEPLEKALADSGL--TVDQIHSvevVGSGSRIPAI 347
                         330       340
                  ....*....|....*....|....*....
gi 1081189302 337 QDRLGEV-----GTVMtldDPKTVVSRGA 360
Cdd:cd24095   348 LKILTKFfgkepSRTM---NASECVARGC 373
ASKHA_NBD_MreB-like cd10225
nucleotide-binding domain (NBD) of the cell shape-determining proteins MreB, Mbl, MreBH and ...
140-360 6.04e-10

nucleotide-binding domain (NBD) of the cell shape-determining proteins MreB, Mbl, MreBH and similar proteins; MreB proteins are bacterial actin homologs that may play a role in cell shape determination by positioning the cell wall synthetic machinery. MreB has also been implicated in chromosome segregation; specifically, MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. The family includes three MreB isoforms, MreB (also called actin-like MreB protein or rod shape-determining protein MreB), Mbl (also called actin-like Mbl protein or rod shape-determining protein Mbl) and MreBH (also called actin-like MreBH protein or rod shape-determining protein MreBH), in cell morphogenesis of Bacillus subtilis. All isoforms can support rod-shaped cell growth normal conditions. They form membrane-associated dynamic filaments that are essential for cell shape determination. They act by regulating cell wall synthesis and cell elongation, and thus cell shape. The feedback loops between cell geometry and their localizations may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature. Filaments rotate around the cell circumference in concert with the cell wall synthesis enzymes. The process is driven by the cell wall synthesis machinery and does not depend on their polymerization. They organize peptidoglycan synthesis in the lateral cell wall. MreB, Mbl and MreBH can form a complex. The MreB-like family belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466824 [Multi-domain]  Cd Length: 317  Bit Score: 60.95  E-value: 6.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 140 SVEQ--LKRSAVAAGVpeQNLRVLSEPRAAAIhyASQQSVQSGSHVAVFDFGGGTLDIAVLrAKGDgnfeVVAAKGDNsL 217
Cdd:cd10225   104 EVERraVKEAAEHAGA--REVYLIEEPMAAAI--GAGLPIEEPRGSMVVDIGGGTTEIAVI-SLGG----IVTSRSVR-V 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 218 GGRTIDNllyrwvldqlehddpDLADFVRSapittVHALESSIREAKEI-------LSDTSSATISVSTPHGETDL---- 286
Cdd:cd10225   174 AGDEMDE---------------AIINYVRR-----KYNLLIGERTAERIkieigsaYPLDEELSMEVRGRDLVTGLprti 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 287 LITRDEFNNVIEQSIMRGVELTRAALTQagvdstkTP-----------IYMTGGSSRIPFVQDRLG-EVG-TVMTLDDPK 353
Cdd:cd10225   234 EITSEEVREALEEPVNAIVEAVRSTLER-------TPpelaadivdrgIVLTGGGALLRGLDELLReETGlPVHVADDPL 306

                  ....*..
gi 1081189302 354 TVVSRGA 360
Cdd:cd10225   307 TCVAKGA 313
PRK11678 PRK11678
putative chaperone; Provisional
262-340 3.06e-08

putative chaperone; Provisional


Pssm-ID: 236954 [Multi-domain]  Cd Length: 450  Bit Score: 56.41  E-value: 3.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 262 EAKEILSDTSSATISVSTPHGETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGVdstkTP--IYMTGGSSRIPFVQDR 339
Cdd:PRK11678  343 EAKIALSDQAETRASLDFISDGLATEISQQGLEEAISQPLARILELVQLALDQAQV----KPdvIYLTGGSARSPLIRAA 418

                  .
gi 1081189302 340 L 340
Cdd:PRK11678  419 L 419
ASKHA_NBD_ParM-like cd10227
nucleotide-binding domain (NBD) of the plasmid segregation protein ParM-like domain family; ...
7-235 8.74e-05

nucleotide-binding domain (NBD) of the plasmid segregation protein ParM-like domain family; ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. ParM-like proteins belong to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily of phosphotransferases, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466825 [Multi-domain]  Cd Length: 263  Bit Score: 44.82  E-value: 8.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302   7 LAVDFGTSNTAAAHQSpmgreisalaltHRSNIMPSAV--FLDAPHGAHAAADEEPTLLNGDS----ALARGRRDPSRLL 80
Cdd:cd10227     1 IGIDIGNGNTKVVTGG------------GKEFKFPSAVaeARESSLDDGLLEDDIIVEYNGKRylvgELALREGGGGRST 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302  81 LSPKRYIDHdevqlagrSLPLtkvvgsvIATVLrsGKAQHANQDPETVTLTHPEAWSAHSVEQLKRSAVAA-------GV 153
Cdd:cd10227    69 GDDKKKSED--------ALLL-------LLAAL--ALLGDDEEVDVNLVVGLPISEYKEEKKELKKKLLKGlheftfnGK 131
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 154 PE----QNLRVLSEPRAAAIHYASQQSVQSGSHVAVFDFGGGTLDIAVLRakgdgNFEVVAAKGDNSLGGRTIDNLLYRW 229
Cdd:cd10227   132 ERritiNDVKVLPEGAGAYLDYLLDDDELEDGNVLVIDIGGGTTDILTFE-----NGKPIEESSDTLPGGEEALEKYADD 206

                  ....*.
gi 1081189302 230 VLDQLE 235
Cdd:cd10227   207 ILNELL 212
ASKHA_NBD_HSP70_HSPA4_like cd10228
nucleotide-binding domain (NBD) of the heat shock 70 kDa protein 4 (HSPA4)-like subfamily; ...
158-360 3.02e-04

nucleotide-binding domain (NBD) of the heat shock 70 kDa protein 4 (HSPA4)-like subfamily; This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4; APG-2; HS24/P52; hsp70 RY; HSPH2), HSPA4L (also known as 70-kDa heat shock protein 4-like; APG-1; HSPH3; OSP94), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1; HSP105; HSP105A; HSP105B; NY-CO-25). They belong to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466826 [Multi-domain]  Cd Length: 378  Bit Score: 43.80  E-value: 3.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 158 LRVLSEPRAAAIHYA-SQQSV----QSGSHVAVFDFGGGTLDIAVLrAKGDGNFEVVAAKGDNSLGGRTIDNLLYRWVLD 232
Cdd:cd10228   165 LRLLNDTTAVALAYGiYKQDLpaeeEKPRNVVFVDMGHSSLQVSVC-AFNKGKLKVLATAADPNLGGRDFDELLVEHFAE 243
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 233 QLE---HDDpdladfVRSAPITTVHaLESSIREAKEILS-DTSSATISVSTPHGETDL--LITRDEFNNVIeQSIMRGVE 306
Cdd:cd10228   244 EFKtkyKID------VKSKPRALLR-LLTECEKLKKLMSaNATELPLNIECFMDDKDVsgKMKRAEFEELC-APLFARVE 315
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081189302 307 LT-RAALTQAGVDstKTPIY---MTGGSSRIPFVQDRLG-----EVGTVMTLDDpktVVSRGA 360
Cdd:cd10228   316 VPlRSALADSKLK--PEDIHsveIVGGSTRIPAIKEIIKkvfgkEPSTTLNQDE---AVARGC 373
ASKHA_NBD_FtsA cd24048
nucleotide-binding domain (NBD) of cell division protein FtsA and similar proteins; FtsA is an ...
137-341 2.88e-03

nucleotide-binding domain (NBD) of cell division protein FtsA and similar proteins; FtsA is an essential cell division protein that assists in the assembly of the Z ring. It may serve as the principal membrane anchor for the Z ring. It is also required for the recruitment to the septal ring of the downstream cell division proteins FtsK, FtsQ, FtsL, FtsI and FtsN. FtsA binds ATP. FtsA interacts with FtsZ. This interaction plays an essential role in cell division.


Pssm-ID: 466898 [Multi-domain]  Cd Length: 372  Bit Score: 40.59  E-value: 2.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 137 SAHSVEQLKRSAVAAGVPEQNLrVLSepraaaiHYASQQSV------QSGshVAVFDFGGGTLDIAVLRakgDGNFEVVA 210
Cdd:cd24048   158 SSSAIQNLIKCVERAGLEVDDI-VLS-------PLASAEAVltedekELG--VALIDIGGGTTDIAVFK---NGSLRYTA 224
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 211 AKgdnSLGGRTIDNllyrwvldqlehddpDLAdfvrsapittvHALESSIREAKEIL---------SDTSSATISVSTPH 281
Cdd:cd24048   225 VI---PVGGNHITN---------------DIA-----------IGLNTPFEEAERLKikygsalseEADEDEIIEIPGVG 275
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1081189302 282 GETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDSTKTP-IYMTGGSSRIP----FVQDRLG 341
Cdd:cd24048   276 GREPREVSRRELAEIIEARVEEILELVKKELKESGYEDLLPGgIVLTGGGSQLPglveLAEEVFG 340
FtsA pfam14450
Cell division protein FtsA; FtsA is essential for bacterial cell division, and co-localizes to ...
184-341 9.46e-03

Cell division protein FtsA; FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains. The FtsA protein contains two structurally related actin-like ATPase domains which are also structurally related to the ATPase domains of HSP70 (see PF00012). FtsA has a SHS2 domain PF02491 inserted in to the RnaseH fold PF02491.


Pssm-ID: 464177 [Multi-domain]  Cd Length: 167  Bit Score: 37.70  E-value: 9.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 184 AVFDFGGGTLDIAVLRAKGDGNFEVVAakgdnsLGGRTIDNllyrwvldqlehddpDLAdfvrsapittvHALESSIREA 263
Cdd:pfam14450   1 ALIDIGGGTTDIAVFEDGALRHTRVIP------VGGNGITK---------------DIA-----------IGLRTAVEEA 48
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081189302 264 KEILSDTSSATIS------VSTPHGETDLLITRDEFNNVIEQSIMRGVELTRAALTQAGVDS--------TKTPIYMTGG 329
Cdd:pfam14450  49 ERLKIKYGSALASladedeVPGVGGREPREISRKELAEIIEARVEEILELVRAELEDREVLPgeyvrlevDVHGIVLTGG 128
                         170
                  ....*....|....*.
gi 1081189302 330 SSRIP----FVQDRLG 341
Cdd:pfam14450 129 GSALPglveLAERALG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH