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Conserved domains on  [gi|1080759650|gb|OFP28308|]
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30S ribosomal protein S21 [Staphylococcus sp. HMSC057C08]

Protein Classification

30S ribosomal protein S21( domain architecture ID 10002851)

30S ribosomal protein S21 is a component of the small ribosomal subunit 30S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 1-58 1.61e-12

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440590  Cd Length: 62  Bit Score: 55.12  E-value: 1.61e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1080759650  1 MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK 58
Cdd:COG0828    1 MIEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRK 58
 
Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 1-58 1.61e-12

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 55.12  E-value: 1.61e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1080759650  1 MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK 58
Cdd:COG0828    1 MIEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRK 58
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 3-58 5.20e-09

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 46.49  E-value: 5.20e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1080759650  3 KTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK 58
Cdd:TIGR00030  2 TVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRK 57
Ribosomal_S21 pfam01165
Ribosomal protein S21;
5-53 8.81e-09

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 45.53  E-value: 8.81e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1080759650  5 VVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAAR 53
Cdd:pfam01165  3 DVKEGENIERALRRLKRKVERNGILRELRRRRFYEKPSEKRKRKKREAW 51
 
Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 1-58 1.61e-12

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 55.12  E-value: 1.61e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1080759650  1 MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK 58
Cdd:COG0828    1 MIEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRK 58
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 3-58 5.20e-09

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 46.49  E-value: 5.20e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1080759650  3 KTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK 58
Cdd:TIGR00030  2 TVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRK 57
Ribosomal_S21 pfam01165
Ribosomal protein S21;
5-53 8.81e-09

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 45.53  E-value: 8.81e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1080759650  5 VVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAAR 53
Cdd:pfam01165  3 DVKEGENIERALRRLKRKVERNGILRELRRRRFYEKPSEKRKRKKREAW 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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