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Conserved domains on  [gi|1080752952|gb|OFP21781|]
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hypothetical protein HMPREF2997_00810 [Staphylococcus sp. HMSC057C08]

Protein Classification

DUF5011 domain-containing protein( domain architecture ID 12177731)

DUF5011 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5011 super family cl47259
Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like ...
 33-104 1.35e-16

Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like domain.


The actual alignment was detected with superfamily member pfam16403:

Pssm-ID: 435320 [Multi-domain]  Cd Length: 71  Bit Score: 67.96  E-value: 1.35e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1080752952  33 KLKGVEDAIIQKGENYNLlNGISAYDKeDGDLTDQIIVNGHVDTNKIGKYKVEYQVIDSDGAKDISERYIEV 104
Cdd:pfam16403   2 TLNGDNDITIELGTTYED-PGATATDN-DGDLTDKVKVTGSVDTSKPGTYTLTYTVTDSDGNSATVTRTVTV 71
 
Name Accession Description Interval E-value
DUF5011 pfam16403
Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like ...
 33-104 1.35e-16

Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like domain.


Pssm-ID: 435320 [Multi-domain]  Cd Length: 71  Bit Score: 67.96  E-value: 1.35e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1080752952  33 KLKGVEDAIIQKGENYNLlNGISAYDKeDGDLTDQIIVNGHVDTNKIGKYKVEYQVIDSDGAKDISERYIEV 104
Cdd:pfam16403   2 TLNGDNDITIELGTTYED-PGATATDN-DGDLTDKVKVTGSVDTSKPGTYTLTYTVTDSDGNSATVTRTVTV 71
 
Name Accession Description Interval E-value
DUF5011 pfam16403
Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like ...
 33-104 1.35e-16

Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like domain.


Pssm-ID: 435320 [Multi-domain]  Cd Length: 71  Bit Score: 67.96  E-value: 1.35e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1080752952  33 KLKGVEDAIIQKGENYNLlNGISAYDKeDGDLTDQIIVNGHVDTNKIGKYKVEYQVIDSDGAKDISERYIEV 104
Cdd:pfam16403   2 TLNGDNDITIELGTTYED-PGATATDN-DGDLTDKVKVTGSVDTSKPGTYTLTYTVTDSDGNSATVTRTVTV 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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