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Conserved domains on  [gi|1079501551|gb|AOW42636|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Nectarinia moreaui x Nectarinia fuelleborni]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-294 8.28e-145

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 410.37  E-value: 8.28e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00112   21 ISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00112  101 ALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00112  181 FSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGF 260

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1079501551 241 LPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQ 294
Cdd:MTH00112  261 MPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMK 314
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-294 8.28e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 410.37  E-value: 8.28e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00112   21 ISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00112  101 ALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00112  181 FSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGF 260

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1079501551 241 LPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQ 294
Cdd:MTH00112  261 MPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMK 314
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-248 4.99e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 4.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQL-----------T 70
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  71 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLL-STVMKLPPL---TLLYLAAPSLN--PTVLVTMAILSAAL 144
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYgliRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 145 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFYLYSVMTAAVFL-TLNAIKALKLSTLMTA----WT 215
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1079501551 216 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 248
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-262 8.22e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 8.22e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLF-SSMTNAwYTGQWDITQLTHPTS------ 74
Cdd:COG1007   121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAaggans 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  75 ------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPLTLLYLAAPSLNP---TVLVTMAILS 141
Cdd:COG1007   200 pllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 142 AALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILTYDPKLTLLNFYL--YSVMTAAVFLTLNAIK-----ALKLSTLMT 212
Cdd:COG1007   280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkggeAEEIEDLAG 359

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1079501551 213 AWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM-ALTAAMI 262
Cdd:COG1007   360 LARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLyWLAVIAV 410
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-255 4.30e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 89.62  E-value: 4.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILT-- 79
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  80 ----------SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPLTLLYLAAPSLNPTVLVTMAILSAA-- 143
Cdd:TIGR01770 201 llllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSEAWQIFLAIIAFLsm 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 144 -LGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSVMTAAVFLTLNAIKALK------LSTLMT 212
Cdd:TIGR01770 281 lIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewieyISDFAG 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1079501551 213 AWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 255
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-294 8.28e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 410.37  E-value: 8.28e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00112   21 ISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00112  101 ALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00112  181 FSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGF 260

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1079501551 241 LPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQ 294
Cdd:MTH00112  261 MPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMK 314
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-290 9.37e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 349.49  E-value: 9.37e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   2 TSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTSA 81
Cdd:MTH00135   22 ASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  82 ISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSlNPTVLVTMAILSAALGGWMGLNQTQIRKIMAF 161
Cdd:MTH00135  102 LALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAY 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 162 SSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFL 241
Cdd:MTH00135  181 SSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFM 260

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1079501551 242 PKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPHTTN 290
Cdd:MTH00135  261 PKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLN 309
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-290 1.76e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 348.83  E-value: 1.76e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00070   21 LSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00070  101 ALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00070  181 YSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGF 260

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1079501551 241 LPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPHTTN 290
Cdd:MTH00070  261 IPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSN 310
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-293 1.10e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 311.40  E-value: 1.10e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00105   21 MISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00105  101 ALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00105  181 YSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGF 260

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1079501551 241 LPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPhTTNHMK 293
Cdd:MTH00105  261 MPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMK 312
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-292 9.20e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 265.68  E-value: 9.20e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00200   21 FSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00200  101 ALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00200  181 YSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGF 260

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1079501551 241 LPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTITLPPHTTNHM 292
Cdd:MTH00200  261 FPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMM 312
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 2-247 6.49e-72

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 225.19  E-value: 6.49e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   2 TSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTSA 81
Cdd:MTH00041   22 SSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  82 ISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMAF 161
Cdd:MTH00041  102 LALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAF 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 162 SSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFL 241
Cdd:MTH00041  182 SSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFL 261


                  ....*.
gi 1079501551 242 PKWLII 247
Cdd:MTH00041  262 NKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-255 1.30e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 172.32  E-value: 1.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWytgqwdITQLTHPTSCLILTS 80
Cdd:MTH00160   22 ISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLaapSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00160   96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY---LINNNFIIIIIILSAIIGAIGGLNQTSLRKILA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00160  173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGF 252

                         250
                  ....*....|....*
gi 1079501551 241 LPKWLIIQELTKQDM 255
Cdd:MTH00160  253 LPKWIIIQLLISNNM 267
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-262 3.97e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 150.04  E-value: 3.97e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITqlthptscLILTS 80
Cdd:MTH00144   21 LSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNP-TVLVTMAILSAALGGWMGLNQTQIRKIM 159
Cdd:MTH00144   93 GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 160 AFSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNaiKALKLSTLMTAWTKTPSLNAMLLLTLLSLAG-LPPLT 238
Cdd:MTH00144  173 AYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW--SGDSGSMKDLGSLKPSYKTGLSIISLLLSLGgLPPFL 250

                         250       260
                  ....*....|....*....|....
gi 1079501551 239 GFLPKWLIIQELTKQDMALTAAMI 262
Cdd:MTH00144  251 GFCSKLLVLISSMESSPLLLILLL 274
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-257 1.99e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.39  E-value: 1.99e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSmtnawyTGQWDITQLTHPTSCLILTS 80
Cdd:MTH00011   23 LSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLV 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00011   97 SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGF 240
Cdd:MTH00011  177 YSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGF 256

                         250
                  ....*....|....*..
gi 1079501551 241 LPKWLIIQELTKQDMAL 257
Cdd:MTH00011  257 MPKLMAIETLTSNSMIL 273
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-282 7.19e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 128.25  E-value: 7.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   1 MTSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAwytgqwdITQLTHPTSCLILTS 80
Cdd:MTH00197   15 LSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLYLSLLSVVLVIL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLylAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMA 160
Cdd:MTH00197   88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 161 FSSISHLGWMAIILTYDPKLTLLNFYLYSVMTAAVFLTLNAIKALKLSTlMTAWTKTPSLNAMLLLTLLSLAG-LPPLTG 239
Cdd:MTH00197  166 YSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGLSFLSLGgLPPLSG 244

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1079501551 240 FLPKWLIIQELTKQDMALTAAMIALLSLLSLFFYLRLAYCTTI 282
Cdd:MTH00197  245 FFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-248 4.99e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 4.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQL-----------T 70
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  71 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLL-STVMKLPPL---TLLYLAAPSLN--PTVLVTMAILSAAL 144
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYgliRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 145 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFYLYSVMTAAVFL-TLNAIKALKLSTLMTA----WT 215
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1079501551 216 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 248
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 3-247 8.09e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 99.33  E-value: 8.09e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASTLVLFS-------------SMTNAWYTGQWDITQ 68
Cdd:MTH00196   12 SSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSS 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  69 LTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNptVLVTMAILSAALGGWM 148
Cdd:MTH00196   92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFSLFVGAIG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 149 GLNQTQIRKIMAFSSISHLGWMAIILTYDP----KLTLLNFYLYSVMTAAVFLTLNAIKALK--LSTLMTAWTKTPSLNA 222
Cdd:MTH00196  170 ALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAI 249

                         250       260
                  ....*....|....*....|....*
gi 1079501551 223 MLLLTLLSLAGLPPLTGFLPKWLII 247
Cdd:MTH00196  250 TLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-262 8.22e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 8.22e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLF-SSMTNAwYTGQWDITQLTHPTS------ 74
Cdd:COG1007   121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAaggans 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  75 ------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPLTLLYLAAPSLNP---TVLVTMAILS 141
Cdd:COG1007   200 pllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 142 AALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILTYDPKLTLLNFYL--YSVMTAAVFLTLNAIK-----ALKLSTLMT 212
Cdd:COG1007   280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkggeAEEIEDLAG 359

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1079501551 213 AWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM-ALTAAMI 262
Cdd:COG1007   360 LARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLyWLAVIAV 410
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-247 1.36e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.93  E-value: 1.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   2 TSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDI----TQLTHPTSCL 76
Cdd:MTH00199  115 SSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKI 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  77 ILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNptVLVTMAILSAALGGWMGLNQTQIR 156
Cdd:MTH00199  195 LITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKIK 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 157 KIMAFSSISHLGW----MAIILTYDPKLTLLNFYLYSVMTAAVF---LTLNAIKALkLSTLMTAWTKTPSLNAMLLLTLL 229
Cdd:MTH00199  273 RLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVIALTLALTFL 351

                         250
                  ....*....|....*...
gi 1079501551 230 SLAGLPPLTGFLPKWLII 247
Cdd:MTH00199  352 SIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
3-262 5.91e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 92.19  E-value: 5.91e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTS------- 74
Cdd:PRK05777  122 ANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgnsl 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  75 -----CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPLTLLYLAAPSLNPT---VLVTMAILSA 142
Cdd:PRK05777  202 lllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASM 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 143 ALGGWMGLNQTQIRKIMAFSSISHLGWM---AIILTYDPKLTLLnFYL--YSVMTAAVFLTLNAI-KALKLSTLMTAWT- 215
Cdd:PRK05777  282 LVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLLrRKGGEAESISDFAg 360

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1079501551 216 ---KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM-ALTAAMI 262
Cdd:PRK05777  361 lskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLwWLAVIGV 411
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-255 4.30e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 89.62  E-value: 4.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILT-- 79
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  80 ----------SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPLTLLYLAAPSLNPTVLVTMAILSAA-- 143
Cdd:TIGR01770 201 llllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSEAWQIFLAIIAFLsm 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 144 -LGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSVMTAAVFLTLNAIKALK------LSTLMT 212
Cdd:TIGR01770 281 lIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewieyISDFAG 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1079501551 213 AWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 255
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-263 1.67e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.95  E-value: 1.67e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  10 WTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTH----------PTSCLILT 79
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  80 SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVM-KLPP------LTLLYLAAPSLNP-TVLVTMAILSAALGGWMGLN 151
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 152 QTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLY----SVMTAAVFLTLNAI----KALKLSTLMTAWTKTPSLNAM 223
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIeratGTRDLDKLGGLGKRMPLTAAA 372

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1079501551 224 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAMIA 263
Cdd:COG0651   373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-172 5.28e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.12  E-value: 5.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASTLVLFSSMTNAWYTGQ----WDITQL 69
Cdd:MTH00198  207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlGTILSA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  70 THPTS----------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLlyLAAPSLNPTVLVTMAI 139
Cdd:MTH00198  287 TLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYIL--LTSLVITSKLLLSVAI 364

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1079501551 140 LSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 172
Cdd:MTH00198  365 ISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 31-243 1.13e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 1.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  31 RAIEAATKYFLTQAAASTLVL--FSsmtnaWYTGQ-------WDI------TQLTHPTSCLI----LTSAISMKLGLVPF 91
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  92 HFWFPEVLQGSPLTTGLLLSTVMKLPPLTL----LYLAAPSLNP---TVLVTMAILSAALGGWMGLNQTQIRKIMAFSSI 164
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 165 SHLGWMAI-ILTYDPK------LTLLNFYLysvmtaavFLTLNAIKALKLSTLMTA----------WTKTPSLNAMLLLT 227
Cdd:CHL00049  314 GQIGYVIIgIIVGDSNdgyasmITYMLFYI--------FMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALC 385

                         250
                  ....*....|....*.
gi 1079501551 228 LLSLAGLPPLTGFLPK 243
Cdd:CHL00049  386 LLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 29-172 1.36e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 1.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  29 HPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQW--DITQLTH-----PTSCLILTS---AISMKLGLVPFHFWFPEV 98
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  99 LQGSPLTTGLLLSTVM-KLP-------PLTLLYLAAPSLNPtVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 170
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1079501551 171 AI 172
Cdd:COG1008   315 LL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
30-243 3.13e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.45  E-value: 3.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  30 PRAIEAATKYFLTQAAASTLVLF-SSMTNAWYTGQwdiTQL--------THPTSCLILT-----SAISMKLGLVPFHFWF 95
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  96 PEVLQGSPLTTGLLLSTVMKLP----PLTLLYLAAPSLNP---TVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 168
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 169 WMAIILTYDPKLTLLNFYLYsvMTAAVFLTLNAIKALKLSTLMTA----------WTKTPSLNAMLLLTLLSLAGLPPLT 238
Cdd:PRK02504  314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391


                  ....*
gi 1079501551 239 GFLPK 243
Cdd:PRK02504  392 GFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-246 4.24e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 4.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  13 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASTLVLFS---------SMTNAWYTGQWDITQLTHPTSCL-ILTSA 81
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  82 ISMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTVMKLPPL--TLLYLAAPSLNPT----VLVTMAILSAALGGWMGLNQT 153
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 154 QIRKIMAFSSISHLGWM------AIILTYDPKLTLLNFylySVMTAAVFLTLN--AIKALklsTLMTAW-----TKTPSL 220
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGE---IALAGGIYHIVNhaLYKAL---LFLTAGaviyeTGTRNL 383

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1079501551 221 NAML-------------LLTLLSLAGLPPLTGFLPKWLI 246
Cdd:PRK08376  384 NELGglartmpkttiafLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 14-262 3.24e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 3.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  14 EINTLAILPLISKSHHpRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDIT-------QLTHPTSCLI----LTSAI 82
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  83 SMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMK-------------LPPLTLL-----YLAAPSLNpTVLVTMAILSAAL 144
Cdd:PRK08668  207 VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLPGTKLFsefgtYRGVPLFN-YILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 145 GGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLT----LLNFYLYSVMTAAVFLTLNAI----KALKLSTLMTAWTK 216
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1079501551 217 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAMI 262
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 30-172 5.15e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.79  E-value: 5.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  30 PRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQW----DITQLTHPTSC-----LILTSAISMKLGLVPFHFWFPEVLQ 100
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 101 GSPLTTGLLLS-TVMKLPPLTLLYLAAPsLNP-------TVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 172
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 8-172 1.02e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.56  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   8 LAWtglEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQ--WDITQLTH---PTSCLILTS-- 80
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYag 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 ---AISMKLGLVPFHFWFPE-----------VLQGSPLTTG--LLLSTVMKLPPLTLLYLAApslnptVLVTMAILSAAL 144
Cdd:PRK12561  191 fliAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyALIRFNVQMLPDAHVYFAP------ALAILGVVNIIY 264

                         170       180
                  ....*....|....*....|....*...
gi 1079501551 145 GGWMGLNQTQIRKIMAFSSISHLGWMAI 172
Cdd:PRK12561  265 GALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 3-172 1.26e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   3 SNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------STLVLFSSMTNAWYTGQWDITQLTHPTSCL 76
Cdd:PRK08676  121 SDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHASLL 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  77 ----ILTSAISM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVM---------KLPPLTLLYLAAPSLNPtVLVTM 137
Cdd:PRK08676  201 spsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVlnigiygilRLSALLRQSGAAEQFSN-VLIGL 279

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1079501551 138 AILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 172
Cdd:PRK08676  280 GIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 76-243 1.29e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.46  E-value: 1.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  76 LILTSAISmKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLN------PTVLVtMAILSAALGGWMG 149
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFAdvpvwrPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 150 LNQTQIRKIMAFSSISHLGWMAIIL---TYDPKLTLLNFYL-YSVMTAAVFLTLNAIKAL-------KLSTLmtaWTKTP 218
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVgigTRDAALAGLAMLLaHALFKAALFLVVGIIDHStgtrdirKLSGL---GRRQP 362

                         170       180
                  ....*....|....*....|....*
gi 1079501551 219 SLNAMLLLTLLSLAGLPPLTGFLPK 243
Cdd:PRK12644  363 VLAVVAALAAASMAGLPPLLGFVAK 387
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
72-263 1.49e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.10  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  72 PTSCLILTSAISMKLGLVPFhFWFPEVLQGSPLTTGLLLSTVMK-------LPPLTLLYLAAPSLNPTVLVTMAILSAAL 144
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 145 GGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYLYSVMT--AAVFLTLNAIKAL----KLSTLMTAWTK 216
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1079501551 217 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ-ELTKQDMALTAAMIA 263
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLI 413
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
35-170 1.55e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.23  E-value: 1.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  35 AATKYFLTQAAASTLVLFSSMTNAWYTG-------QWDITQLTHPTSCLILTS---AISMKLGLVPFHFWFPEV-LQGSP 103
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1079501551 104 LTTGLLLSTVMKLPPLTLL------YLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 170
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-247 1.74e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  13 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFS-----SMTNAWYTGqwDITQLTHP--------TSCLILT 79
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  80 SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TVMKLPPLTL-----------LYLAAPSLNpTVLVTMAILSAALGGW 147
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 148 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLY----SVMTAAVFLTLNAIK----ALKLSTLMTAWTKTPS 219
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1079501551 220 LNAMLLLTLLSLAGLPPLTGFLPKWLII 247
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-174 2.63e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.53  E-value: 2.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   2 TSNHWVLAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTH--------- 71
Cdd:COG1009   129 LSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilssp 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  72 ---PTSCLILTSAISmKLGLVPFHFWFPEVLQG----SPL-------TTGLLLstVMKLPPltlLYLAAPSLNPTVLVTM 137
Cdd:COG1009   209 lltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSP---LFALSPVWLTVVAIIG 282

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1079501551 138 AIlSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIIL 174
Cdd:COG1009   283 AI-TALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 30-172 4.36e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 4.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  30 PRAIEAATKYFLTQAAASTLVLFSSMTNAWY----TGQWDITQLTH---PTSCLILT-----SAISMKLGLVPFHFWFPE 97
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  98 VLQ-----GSPLTTGLLLST--------VMKLPPLTLLYLAapslnpTVLVTMAILSAALGGWMGLNQTQIRKIMAFSSI 164
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygllrfSLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYSSI 310


                  ....*...
gi 1079501551 165 SHLGWMAI 172
Cdd:PRK05846  311 SHMGFVTL 318
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-172 4.54e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.54  E-value: 4.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551   2 TSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFL------TQAAASTLVLFSSMTnawytgqwdiTQLTHPTSC 75
Cdd:PRK06458  126 TSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAA----------TVMGDGEMA 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  76 LILTSAISM----------------------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLY----LAAPSL 129
Cdd:PRK06458  196 ILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLryyiLIDAAI 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1079501551 130 NP----TVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 172
Cdd:PRK06458  276 GSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 81-174 5.78e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.14  E-value: 5.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTV-MKLPPLTLLYLAAP-------SLNPTVlVTMAILSAALGGWMGLNQ 152
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAV-IAMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|..
gi 1079501551 153 TQIRKIMAFSSISHLGWMAIIL 174
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITL 339
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 61-175 8.04e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 8.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  61 TGQWDITQLTHPT-----SCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVM-KLPPLTLLYLAAPSLNP--- 131
Cdd:PRK08667  189 TGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMlKVAVYGLVRFLMDVLSPelw 268

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1079501551 132 --TVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGwmaIILT 175
Cdd:PRK08667  269 wgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG---IILM 311
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-262 1.10e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 43.33  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  13 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFS-SMTNAwYTGQWDITQL--------THPTSCLILTSAIS 83
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  84 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTVMKLP--PLTLLYL--------AAPSLNpTVLVTMAILSAALGGWMGLNQ 152
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFtvfggdfrFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 153 TQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSVMTAAVFLTLNAI----KALKLSTLMTAWTKTPSLNAML 224
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1079501551 225 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAAMI 262
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
35-248 1.91e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.78  E-value: 1.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  35 AATKYFLTQAAASTLVLFSSMTNAWYTGQWD------ITQ-LTHPTSCLILTSAI---SMKLGLVPFHFWFPEV-LQGSP 103
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 104 LTTGLLLSTVMKLPPLTL------LYLAAPSLNPTVLVTMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYD 177
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 178 PKLTLL----NFYLYSVMTAAVFLTLNAIKAL-------KLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 246
Cdd:PRK07363  318 TQLSLLgavaQMISHGLILALLFHLVGIVERKvgtrdldVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                  ..
gi 1079501551 247 IQ 248
Cdd:PRK07363  398 FQ 399
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 83-251 5.19e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.48  E-value: 5.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  83 SMKLGLvpfHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLN--PTVLVTMAI---LSAALGGWMGLNQTQIRK 157
Cdd:MTH00032  239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEkaPLTLLIITIfgaLTAFFAATVGLVQNDLKK 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 158 IMAFSSISHLGWMAIILTYDPKLTLLNFYL--YSVMTAAVFLTLNAI---------KALKLSTLMTAwtkTPSLNAMLLL 226
Cdd:MTH00032  316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLI 392

                         170       180
                  ....*....|....*....|....*
gi 1079501551 227 TLLSLAGLPPLTGFLPKWLIIqELT 251
Cdd:MTH00032  393 GSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12650 PRK12650
DUF4040 family protein;
67-170 6.41e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 6.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  67 TQLTHPTSCLILTSAISmKLGLVPFHFWFPEVLQG-SPLTTGLLLSTVMKLPPLTLL-YLAAPSLNPT---VLVTMAILS 141
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwLLIIVGMIT 282

                          90       100
                  ....*....|....*....|....*....
gi 1079501551 142 AALGGWMGLNQTQIRKIMAFSSISHLGWM 170
Cdd:PRK12650  283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 75-248 1.49e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.06  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  75 CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAP--SLNPTVLVTMAI---LSAALGGWMG 149
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALIIVTIvgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 150 LNQTQIRKIMAFSSISHLGWMAIILTydpkltlLNFY---LYSVMTAAVF---LTLNA---IKAL-------KLSTLMTA 213
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFkalLFLSAgsvIHALsdeqdmrKMGGLISF 365

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1079501551 214 wtkTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 248
Cdd:MTH00020  366 ---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
32-170 2.94e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 2.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  32 AIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTSCLILTSAISMKLGLV----------------PFHFWF 95
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  96 PEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAP--SLNPTVLVTMAI---LSAALGGWMGLNQTQIRKIMAFSSISHLGWM 170
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 28-243 5.53e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 5.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  28 HHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQLTHPTS---------------CLILTSAISmKLGLVPFH 92
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  93 FWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYLAAPSLNPT----VLVT-MAILSAALGGWMGLNQTQIRKIMAFSSISHL 167
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfILVSgTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 168 GWMAIILTY----DPKLTLL--NFYL--YSVMTAAVFLtLNAIKALKLST-----LMTAWTKTPSLNAMLLLTLLSLAGL 234
Cdd:PRK12649  315 AYLMTMYGYttyhEPGLGVAaaTFHLlnHATFKACLFL-VAGIVAHEAATrdirkLGGLRKEMPITFIVASIAALAMAGI 393


                  ....*....
gi 1079501551 235 PPLTGFLPK 243
Cdd:PRK12649  394 PPLNGFLSK 402
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
14-248 7.87e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 37.70  E-value: 7.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  14 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASTLVLFSSMTNAWYTGQWDITQ-----LTHPTSCLILTSAISMKLGL 88
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  89 V------PFHFWFPEVLQGSPLTTGLLLSTVMKLPPLTLLYL-----AAPSLNP---TVLVTMAILSAALGGWMGLNQTQ 154
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVifklfGGLSYFPsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551 155 IRKIMAFSSISHLGWMAIILTYDPKLTL-------LNFYLYsvmTAAVFLTLNAI----KALKLSTLMTAWTKTPSLNAM 223
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1079501551 224 LLLTLLSLAGLPPLTGFLPKWLIIQ 248
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 81-168 8.02e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 37.74  E-value: 8.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  81 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTV-MKLPPLTLLYLAAPSL-------NPtVLVTMAILSAALGGWMGLNQ 152
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGIlLKLGGYGFLRFSWPLFpaaseyfAP-LIVMLSVIAVIYGSLTTCRQ 296

                          90
                  ....*....|....*.
gi 1079501551 153 TQIRKIMAFSSISHLG 168
Cdd:MTH00204  297 VDFKRLIAYSSVAHMG 312
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 35-172 8.57e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 37.38  E-value: 8.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  35 AATKYFLTQAAASTLVLFSSMTNAWYTG--QWDITQLTH---PTSCLILTS-----AISMKLGLVPFHFWFPE------- 97
Cdd:PRK02546  166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAkdfGLGFQLLCYaglliAYGVKLPIVPLHTWLPDahgeata 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079501551  98 ----VLQGSPLTTG---LLLSTVMKLPPLTLLYlaAPSLnpTVLVTMAILSAALGGWMglnQTQIRKIMAFSSISHLGWM 170
Cdd:PRK02546  246 pvhmLLAGILLKMGgyaLLRMNAGMLPDAHAQF--APLL--IVLGVVNIIYAALTSFA---QRNLKRKIAYSSISHMGFV 318


                  ..
gi 1079501551 171 AI 172
Cdd:PRK02546  319 LI 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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