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Conserved domains on  [gi|1072956793|ref|XP_018489305|]
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trihelix transcription factor ENAP1-like isoform X7 [Raphanus sativus]

Protein Classification

myb/SANT-like DNA-binding domain-containing protein( domain architecture ID 10619758)

nyb/SANT (SWI3, ADA2, N-CoR and TFIIIB)-like DNA-binding domain-containing protein may bind DNA and function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0003700|GO:0003677
PubMed:  8882580
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 29-112 6.17e-11

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


:

Pssm-ID: 463994  Cd Length: 84  Bit Score: 57.28  E-value: 6.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1072956793  29 EDWWSEDATATLIEAWGDRYVHLSRGNLRQN--DWKEVADAVNSRhggnGQPKTDVQCKNRIDTLKKK--YKTEKAKPSS 104
Cdd:pfam13837   1 RNKWTEEETLALIEIWGERLELRFQESKKRNkkLWEEIAEKMAEL----GYNRSPEQCKEKWENLKKKyrKEKEGNNGSG 76


                  ....*...
gi 1072956793 105 SSWCFFER 112
Cdd:pfam13837  77 SSWPFFEE 84
 
Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 29-112 6.17e-11

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 57.28  E-value: 6.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1072956793  29 EDWWSEDATATLIEAWGDRYVHLSRGNLRQN--DWKEVADAVNSRhggnGQPKTDVQCKNRIDTLKKK--YKTEKAKPSS 104
Cdd:pfam13837   1 RNKWTEEETLALIEIWGERLELRFQESKKRNkkLWEEIAEKMAEL----GYNRSPEQCKEKWENLKKKyrKEKEGNNGSG 76


                  ....*...
gi 1072956793 105 SSWCFFER 112
Cdd:pfam13837  77 SSWPFFEE 84
MADF smart00595
subfamily of SANT domain;
40-116 8.58e-04

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 37.72  E-value: 8.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1072956793   40 LIEA-------WGDRYVHLSRGNLRQNDWKEVADAVNSrhggngqpkTDVQCKNRIDTL--------KKKYKTEKAKPSS 104
Cdd:smart00595   2 LIELvrerpclWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLrdryrrelKRLQNGKSGGGKK 72

                           90
                   ....*....|..
gi 1072956793  105 SSWCFFERLDFL 116
Cdd:smart00595  73 SKWEYFDRLSFL 84
 
Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 29-112 6.17e-11

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 57.28  E-value: 6.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1072956793  29 EDWWSEDATATLIEAWGDRYVHLSRGNLRQN--DWKEVADAVNSRhggnGQPKTDVQCKNRIDTLKKK--YKTEKAKPSS 104
Cdd:pfam13837   1 RNKWTEEETLALIEIWGERLELRFQESKKRNkkLWEEIAEKMAEL----GYNRSPEQCKEKWENLKKKyrKEKEGNNGSG 76


                  ....*...
gi 1072956793 105 SSWCFFER 112
Cdd:pfam13837  77 SSWPFFEE 84
MADF smart00595
subfamily of SANT domain;
40-116 8.58e-04

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 37.72  E-value: 8.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1072956793   40 LIEA-------WGDRYVHLSRGNLRQNDWKEVADAVNSrhggngqpkTDVQCKNRIDTL--------KKKYKTEKAKPSS 104
Cdd:smart00595   2 LIELvrerpclWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLrdryrrelKRLQNGKSGGGKK 72

                           90
                   ....*....|..
gi 1072956793  105 SSWCFFERLDFL 116
Cdd:smart00595  73 SKWEYFDRLSFL 84
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
 40-116 7.83e-03

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 34.57  E-value: 7.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1072956793  40 LIEA-------WGDRYVHLSRGNLRQNDWKEVADAVNSrhggngqPKTDVQCKNRIDTL-------KKKYKTEKAKPSSS 105
Cdd:pfam10545   1 LIELvrehpclWDRSHPDYRNRDARERAWEEIAEELGS-------DVPVEDCKKRWKNLrdqyrreLRRKRTNSGELYKS 73

                          90
                  ....*....|.
gi 1072956793 106 SWCFFERLDFL 116
Cdd:pfam10545  74 RWYYYEELSFL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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