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Conserved domains on  [gi|1070109612|ref|YP_009296148|]
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ribosomal protein S19 (plastid) [Schizymenia dubyi]

Protein Classification

30S ribosomal protein S19( domain architecture ID 10000054)

30S ribosomal protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps19 CHL00050
ribosomal protein S19
 12-89 1.88e-45

ribosomal protein S19


:

Pssm-ID: 176991  Cd Length: 92  Bit Score: 140.83  E-value: 1.88e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612 12 IIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:CHL00050  15 LLKKIEKLNTKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGHAKNDKKSRR 92
 
Name Accession Description Interval E-value
rps19 CHL00050
ribosomal protein S19
 12-89 1.88e-45

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 140.83  E-value: 1.88e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612 12 IIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:CHL00050  15 LLKKIEKLNTKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGHAKNDKKSRR 92
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 13-89 6.31e-41

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 129.42  E-value: 6.31e-41
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1070109612 13 IKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:COG0185   16 LKKVEKANESGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRTFVGHGGPGKGATR 92
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 4-89 2.67e-39

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 125.17  E-value: 2.67e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1070109612  4 KRPVYRTQIIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKS 83
Cdd:TIGR01050  7 KGPFVDHHLLKKVEKLNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTFKGHAKS 86


                 ....*.
gi 1070109612 84 DRKGRK 89
Cdd:TIGR01050 87 DKKSKR 92
Ribosomal_S19 pfam00203
Ribosomal protein S19;
13-80 1.35e-38

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 122.89  E-value: 1.35e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612 13 IKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSH 80
Cdd:pfam00203 13 LKKVRKAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
 
Name Accession Description Interval E-value
rps19 CHL00050
ribosomal protein S19
 12-89 1.88e-45

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 140.83  E-value: 1.88e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612 12 IIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:CHL00050  15 LLKKIEKLNTKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGHAKNDKKSRR 92
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 12-89 1.53e-43

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 136.08  E-value: 1.53e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612 12 IIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:PRK00357  15 LLKKVEKANESGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTRTFRGHAADKKAKRK 92
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 13-89 6.31e-41

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 129.42  E-value: 6.31e-41
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1070109612 13 IKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:COG0185   16 LKKVEKANESGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRTFVGHGGPGKGATR 92
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 4-89 2.67e-39

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 125.17  E-value: 2.67e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1070109612  4 KRPVYRTQIIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKS 83
Cdd:TIGR01050  7 KGPFVDHHLLKKVEKLNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTFKGHAKS 86


                 ....*.
gi 1070109612 84 DRKGRK 89
Cdd:TIGR01050 87 DKKSKR 92
Ribosomal_S19 pfam00203
Ribosomal protein S19;
13-80 1.35e-38

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 122.89  E-value: 1.35e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612 13 IKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSH 80
Cdd:pfam00203 13 LKKVRKAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
rps19p PRK04038
30S ribosomal protein S19P; Provisional
 13-80 9.05e-19

30S ribosomal protein S19P; Provisional


Pssm-ID: 235209  Cd Length: 134  Bit Score: 74.52  E-value: 9.05e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1070109612  13 IKKIDQLNSKDskETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSH 80
Cdd:PRK04038   52 IRKARREKKKG--RVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQH 117
uS19_arch TIGR01025
ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal ...
 11-80 2.40e-14

ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal protein uS19 (previously S15) and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273400  Cd Length: 135  Bit Score: 63.33  E-value: 2.40e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1070109612  11 QIIKKIDQLNSKDSKETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSH 80
Cdd:TIGR01025  49 KLRKAKKEAPPGEKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKH 118
PTZ00096 PTZ00096
40S ribosomal protein S15; Provisional
 26-71 4.87e-12

40S ribosomal protein S15; Provisional


Pssm-ID: 185442  Cd Length: 143  Bit Score: 57.34  E-value: 4.87e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1070109612  26 ETIKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEF 71
Cdd:PTZ00096   74 KAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEF 119
PLN03147 PLN03147
ribosomal protein S19; Provisional
 11-89 1.13e-11

ribosomal protein S19; Provisional


Pssm-ID: 178692  Cd Length: 92  Bit Score: 55.37  E-value: 1.13e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1070109612 11 QIIKKIDQLNSKdsketiKTWSRSSTIIPNMVGHTIAIHNGKQHFPVFISDQMVGHKLGEFVPTRTFRSHIKSDRKGRK 89
Cdd:PLN03147  15 RIKKKRDLLLGK------KIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTRKRRPHRAIIAKGNK 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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