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replisome organizer [Lactococcus phage 50101]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Phage_rep_org_N super family | cl09889 | N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ... |
1-115 | 2.77e-33 | |||
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region. The actual alignment was detected with superfamily member TIGR01714: Pssm-ID: 447848 Cd Length: 119 Bit Score: 118.36 E-value: 2.77e-33
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DnaD | COG3935 | DNA replication protein DnaD [Replication, recombination and repair]; |
170-270 | 8.50e-16 | |||
DNA replication protein DnaD [Replication, recombination and repair]; : Pssm-ID: 443136 Cd Length: 103 Bit Score: 71.59 E-value: 8.50e-16
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Name | Accession | Description | Interval | E-value | |||
phage_rep_org_N | TIGR01714 | phage replisome organizer, putative, N-terminal region; This model represents the N-terminal ... |
1-115 | 2.77e-33 | |||
phage replisome organizer, putative, N-terminal region; This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region. [Mobile and extrachromosomal element functions, Prophage functions] Pssm-ID: 130775 Cd Length: 119 Bit Score: 118.36 E-value: 2.77e-33
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Phage_rep_org_N | pfam09681 | N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ... |
1-115 | 4.37e-32 | |||
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region. Pssm-ID: 430749 Cd Length: 121 Bit Score: 115.18 E-value: 4.37e-32
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DnaD | COG3935 | DNA replication protein DnaD [Replication, recombination and repair]; |
170-270 | 8.50e-16 | |||
DNA replication protein DnaD [Replication, recombination and repair]; Pssm-ID: 443136 Cd Length: 103 Bit Score: 71.59 E-value: 8.50e-16
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DnaD_dom | TIGR01446 | DnaD and phage-associated domain; This model represents the conserved domain of DnaD, part of ... |
170-238 | 8.54e-12 | |||
DnaD and phage-associated domain; This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions] Pssm-ID: 273630 Cd Length: 73 Bit Score: 59.62 E-value: 8.54e-12
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DnaB_2 | pfam07261 | Replication initiation and membrane attachment; This family consists of several bacterial ... |
173-238 | 6.99e-10 | |||
Replication initiation and membrane attachment; This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261. Pssm-ID: 462127 Cd Length: 70 Bit Score: 54.08 E-value: 6.99e-10
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Name | Accession | Description | Interval | E-value | |||
phage_rep_org_N | TIGR01714 | phage replisome organizer, putative, N-terminal region; This model represents the N-terminal ... |
1-115 | 2.77e-33 | |||
phage replisome organizer, putative, N-terminal region; This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region. [Mobile and extrachromosomal element functions, Prophage functions] Pssm-ID: 130775 Cd Length: 119 Bit Score: 118.36 E-value: 2.77e-33
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Phage_rep_org_N | pfam09681 | N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ... |
1-115 | 4.37e-32 | |||
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region. Pssm-ID: 430749 Cd Length: 121 Bit Score: 115.18 E-value: 4.37e-32
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DnaD | COG3935 | DNA replication protein DnaD [Replication, recombination and repair]; |
170-270 | 8.50e-16 | |||
DNA replication protein DnaD [Replication, recombination and repair]; Pssm-ID: 443136 Cd Length: 103 Bit Score: 71.59 E-value: 8.50e-16
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DnaD_dom | TIGR01446 | DnaD and phage-associated domain; This model represents the conserved domain of DnaD, part of ... |
170-238 | 8.54e-12 | |||
DnaD and phage-associated domain; This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions] Pssm-ID: 273630 Cd Length: 73 Bit Score: 59.62 E-value: 8.54e-12
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DnaB_2 | pfam07261 | Replication initiation and membrane attachment; This family consists of several bacterial ... |
173-238 | 6.99e-10 | |||
Replication initiation and membrane attachment; This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261. Pssm-ID: 462127 Cd Length: 70 Bit Score: 54.08 E-value: 6.99e-10
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Blast search parameters | ||||
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