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Conserved domains on  [gi|1067579743|emb|SBM90739|]
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putative transporter [Neisseria gonorrhoeae]

Protein Classification

ABC transporter permease( domain architecture ID 11439550)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-508 8.00e-81

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 261.63  E-value: 8.00e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   1 MDGRRWAVRGAFSLLPSAFLAVMVVAPLWAVAAY----DGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWV 76
Cdd:COG1178     1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRaftdGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  77 LARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL---WRGRQDTPYLLLYG-------NVFFNLPVLVRAAYQ 146
Cdd:COG1178    81 LARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLntlLRALFGLEPPDIYGlggiilvLVLFNYPYVYLLLRA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 147 GFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGsRYATVEVEIYQLVMFELDMA 226
Cdd:COG1178   161 ALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAWLGDFDLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 227 GASALVWLVLGVTAAAGLLYAWFGRRA--VSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGES 304
Cdd:COG1178   240 AAAALALVLLLLVLLLLLLERRLRRRRryATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 305 --------RRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRL-----VWMRGLVFLPFMVSPVCVSAGVLLLY 371
Cdd:COG1178   320 dnltldnyRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRrgrlaRLLDRLAMLPYAVPGIVLGLGLLLLF 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 372 -----PGWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATC 446
Cdd:COG1178   400 nrplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1067579743 447 VGEFAATLFLSRPEWQTLTTLIYAYLGRAgedNYARAMVLTLLLSAFAVCIFLLLDNGEGGK 508
Cdd:COG1178   480 MKELSATLLLRPPGFETLAVLIYQLASSG---RYGEAAALALLLVLVSLLPVLLLERLLGRR 538
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-508 8.00e-81

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 261.63  E-value: 8.00e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   1 MDGRRWAVRGAFSLLPSAFLAVMVVAPLWAVAAY----DGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWV 76
Cdd:COG1178     1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRaftdGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  77 LARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL---WRGRQDTPYLLLYG-------NVFFNLPVLVRAAYQ 146
Cdd:COG1178    81 LARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLntlLRALFGLEPPDIYGlggiilvLVLFNYPYVYLLLRA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 147 GFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGsRYATVEVEIYQLVMFELDMA 226
Cdd:COG1178   161 ALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAWLGDFDLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 227 GASALVWLVLGVTAAAGLLYAWFGRRA--VSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGES 304
Cdd:COG1178   240 AAAALALVLLLLVLLLLLLERRLRRRRryATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 305 --------RRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRL-----VWMRGLVFLPFMVSPVCVSAGVLLLY 371
Cdd:COG1178   320 dnltldnyRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRrgrlaRLLDRLAMLPYAVPGIVLGLGLLLLF 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 372 -----PGWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATC 446
Cdd:COG1178   400 nrplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1067579743 447 VGEFAATLFLSRPEWQTLTTLIYAYLGRAgedNYARAMVLTLLLSAFAVCIFLLLDNGEGGK 508
Cdd:COG1178   480 MKELSATLLLRPPGFETLAVLIYQLASSG---RYGEAAALALLLVLVSLLPVLLLERLLGRR 538
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 5-506 4.13e-50

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 179.65  E-value: 4.13e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   5 RWAVRGAFSLlpsAFLAVMVVAPLWAVAAY-DGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFP 83
Cdd:PRK09433    1 GWLIPGVLAA---ALLVALALLALLALWLHaPGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  84 GRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL-----WRGRQDT--PYLL---LYGNVFFNLPVLVRAAYQGFAQVPA 153
Cdd:PRK09433   78 GRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLaqllqALGLEWPfsIYGLqgiLLAHVFFNLPLATRLLLQALESIPA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 154 ARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCF-SGFGLALLLGGSRYATVEVEIYQLVMFELDMAGASALV 232
Cdd:PRK09433  158 EQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFtSFATVLTLGGGPKATTIELAIYQALSFDFDLARAALLA 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 233 WLVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGESrRVLMESE 312
Cdd:PRK09433  238 LLQMVLCLGLVLLSQRLSKAIAVGATLLRGWRDPQDSLWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASLL-RVLAQPA 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 313 TWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRLVWMRGLVF---------LPFMVSPVCVSAGV-LLLYP--GWTASLPL 380
Cdd:PRK09433  317 LWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAaqalelsgmLILAMPGIVLATGLfLLLRNttDLPASALG 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 381 LLAMY-ALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRP 459
Cdd:PRK09433  397 IVILTnALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQ 476

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 1067579743 460 EWQTLTTLIYAYLGragedNY--ARAMVLTLLLSAFAVCIFLLLDNGEG 506
Cdd:PRK09433  477 DFRTLPFLLYQQLG-----SYrsQDAAVTALLLLLLCLLLFTLIERLPG 520
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 5-489 1.09e-27

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 116.17  E-value: 1.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   5 RWAVRGAFSLLPSAFLAVMVVAPLWAVAAYDglAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPG 84
Cdd:TIGR01253   4 GHLAGGVSAISFIIAFAGAAFLAIFALAGED--DWRAVFQDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  85 RALVLRLLMLPFVMPTLVAGVGVLALFGADGLL----------WRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFAQVPAA 154
Cdd:TIGR01253  82 KKALLKLCALTFILPALVAIFGIIGIYGRQGWLatlanlfgleWQFHIYGLQGILIAHLFFNIPLAAQLFLQALENIPGE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 155 RLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCF-SGFGLALLLGGSRYATVEVEIYQLVMFELDMAGASALVW 233
Cdd:TIGR01253 162 QRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFaSFATVLSLGGGPQATTIELAIYQAILFDFDLAKAALFAL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 234 LVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGESRRVLMESET 313
Cdd:TIGR01253 242 LQFVCCLGLFLLSQRFSKAIANGLSLLNGWFDPDDKLASKICDILLILLALFFLFPPLLAIIIDALNSRNLLEVLANPQL 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 314 WQAVWNTLRFSAAAVFAAAVLGVVYAAAARRLVW-----------MRGLVFLPfmVSPVCVSAGVLLLYPGWTASLPLLL 382
Cdd:TIGR01253 322 WQALGTSLRIALAAALLALTLAIALLLLSRELEAlhkmkagqfieMAGMLILA--IPGIVLAMGFFLLLNDRDFLNIDAD 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 383 AMY----ALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSR 458
Cdd:TIGR01253 400 GIVifcnALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGN 479

                         490       500       510
                  ....*....|....*....|....*....|..
gi 1067579743 459 PEWQTLTTLIYAYLGR-AGEDNYARAMVLTLL 489
Cdd:TIGR01253 480 DDFRSLPFLLYQQIGNyRNQDAAVTAGILLLL 511
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 52-236 8.09e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 8.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  52 LAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQDTPYLLLYG 131
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 132 NVFFnLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATV 211
Cdd:cd06261    81 LLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                         170       180
                  ....*....|....*....|....*.
gi 1067579743 212 EVEIYQLV-MFELDMAGASALVWLVL 236
Cdd:cd06261   160 GTGLLLIFaILFPGDLGVAAAVALIL 185
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 69-171 3.58e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 44.46  E-value: 3.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  69 LGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLAL------FGADGLLWrgrqdTPYLLLYGNVFFNLPVLVR 142
Cdd:NF038017   15 IGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLlsrsgpLGFLGLLY-----TPTAMIIAQAVLALPIVAG 89

                          90       100
                  ....*....|....*....|....*....
gi 1067579743 143 AAYQGFAQVPAARLQTARTLGAGAWRRFW 171
Cdd:NF038017   90 LTLAAVQGLDPELRLQILSLGATRWQALW 118
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 70-252 7.25e-03

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 37.66  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  70 GVPVAWVLARLA-FPGRALVLRLLMLPFVMPTLVAGvgvLALFGADGLLWRGRQDTPYLLLYgnVFFNLPVLVRAAYQGF 148
Cdd:pfam00528   1 GIPLGIIAALRRgRRLDRLLRPLIDLLQALPSFVLA---ILLVVIAILSILGHGILPAIILA--LLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 149 AQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEV-EIYQLVMFELDMAG 227
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLiEAILGYDYPEIQGP 155

                         170       180
                  ....*....|....*....|....*
gi 1067579743 228 ASALVWLVLGVTAAAGLLYAWFGRR 252
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-508 8.00e-81

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 261.63  E-value: 8.00e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   1 MDGRRWAVRGAFSLLPSAFLAVMVVAPLWAVAAY----DGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWV 76
Cdd:COG1178     1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRaftdGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  77 LARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL---WRGRQDTPYLLLYG-------NVFFNLPVLVRAAYQ 146
Cdd:COG1178    81 LARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLntlLRALFGLEPPDIYGlggiilvLVLFNYPYVYLLLRA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 147 GFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGsRYATVEVEIYQLVMFELDMA 226
Cdd:COG1178   161 ALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAWLGDFDLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 227 GASALVWLVLGVTAAAGLLYAWFGRRA--VSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGES 304
Cdd:COG1178   240 AAAALALVLLLLVLLLLLLERRLRRRRryATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 305 --------RRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRL-----VWMRGLVFLPFMVSPVCVSAGVLLLY 371
Cdd:COG1178   320 dnltldnyRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRrgrlaRLLDRLAMLPYAVPGIVLGLGLLLLF 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 372 -----PGWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATC 446
Cdd:COG1178   400 nrplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1067579743 447 VGEFAATLFLSRPEWQTLTTLIYAYLGRAgedNYARAMVLTLLLSAFAVCIFLLLDNGEGGK 508
Cdd:COG1178   480 MKELSATLLLRPPGFETLAVLIYQLASSG---RYGEAAALALLLVLVSLLPVLLLERLLGRR 538
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 5-506 4.13e-50

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 179.65  E-value: 4.13e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   5 RWAVRGAFSLlpsAFLAVMVVAPLWAVAAY-DGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFP 83
Cdd:PRK09433    1 GWLIPGVLAA---ALLVALALLALLALWLHaPGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  84 GRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL-----WRGRQDT--PYLL---LYGNVFFNLPVLVRAAYQGFAQVPA 153
Cdd:PRK09433   78 GRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLaqllqALGLEWPfsIYGLqgiLLAHVFFNLPLATRLLLQALESIPA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 154 ARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCF-SGFGLALLLGGSRYATVEVEIYQLVMFELDMAGASALV 232
Cdd:PRK09433  158 EQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFtSFATVLTLGGGPKATTIELAIYQALSFDFDLARAALLA 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 233 WLVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGESrRVLMESE 312
Cdd:PRK09433  238 LLQMVLCLGLVLLSQRLSKAIAVGATLLRGWRDPQDSLWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASLL-RVLAQPA 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 313 TWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRLVWMRGLVF---------LPFMVSPVCVSAGV-LLLYP--GWTASLPL 380
Cdd:PRK09433  317 LWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAaqalelsgmLILAMPGIVLATGLfLLLRNttDLPASALG 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 381 LLAMY-ALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRP 459
Cdd:PRK09433  397 IVILTnALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQ 476

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 1067579743 460 EWQTLTTLIYAYLGragedNY--ARAMVLTLLLSAFAVCIFLLLDNGEG 506
Cdd:PRK09433  477 DFRTLPFLLYQQLG-----SYrsQDAAVTALLLLLLCLLLFTLIERLPG 520
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 5-489 1.09e-27

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 116.17  E-value: 1.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   5 RWAVRGAFSLLPSAFLAVMVVAPLWAVAAYDglAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPG 84
Cdd:TIGR01253   4 GHLAGGVSAISFIIAFAGAAFLAIFALAGED--DWRAVFQDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  85 RALVLRLLMLPFVMPTLVAGVGVLALFGADGLL----------WRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFAQVPAA 154
Cdd:TIGR01253  82 KKALLKLCALTFILPALVAIFGIIGIYGRQGWLatlanlfgleWQFHIYGLQGILIAHLFFNIPLAAQLFLQALENIPGE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 155 RLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCF-SGFGLALLLGGSRYATVEVEIYQLVMFELDMAGASALVW 233
Cdd:TIGR01253 162 QRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFaSFATVLSLGGGPQATTIELAIYQAILFDFDLAKAALFAL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 234 LVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAGESRRVLMESET 313
Cdd:TIGR01253 242 LQFVCCLGLFLLSQRFSKAIANGLSLLNGWFDPDDKLASKICDILLILLALFFLFPPLLAIIIDALNSRNLLEVLANPQL 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 314 WQAVWNTLRFSAAAVFAAAVLGVVYAAAARRLVW-----------MRGLVFLPfmVSPVCVSAGVLLLYPGWTASLPLLL 382
Cdd:TIGR01253 322 WQALGTSLRIALAAALLALTLAIALLLLSRELEAlhkmkagqfieMAGMLILA--IPGIVLAMGFFLLLNDRDFLNIDAD 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 383 AMY----ALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSR 458
Cdd:TIGR01253 400 GIVifcnALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGN 479

                         490       500       510
                  ....*....|....*....|....*....|..
gi 1067579743 459 PEWQTLTTLIYAYLGR-AGEDNYARAMVLTLL 489
Cdd:TIGR01253 480 DDFRSLPFLLYQQIGNyRNQDAAVTAGILLLL 511
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 4-252 3.40e-26

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 107.93  E-value: 3.40e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   4 RRWAVRGAFSLLPSAFLAVMVVAPLWAVAAY------------DGL---AWRAVLSDAYMLKRLAWTVFQAAATCVLVLP 68
Cdd:COG1176     6 RRRLRPLLLLLPALLWLLLFFVLPLLLLLVYsfttrdpyggvvPGFtleNYARLFTDPLYLKVLLRTLWIALLTTLICLL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  69 LGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADG-----LLWRGRQDTPYLLLY-------GNVFFN 136
Cdd:COG1176    86 LGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGllnslLLALGLIDEPLRLLYtefavviGLVYVY 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 137 LPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIY 216
Cdd:COG1176   166 LPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIY 245

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1067579743 217 QLVMFELDMAGASALVWLVLGVTAAAGLLYAWFGRR 252
Cdd:COG1176   246 QQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRR 281
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-190 5.68e-25

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 104.06  E-value: 5.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   1 MDGRRWAVRGAFSLLPSAFLAVMVVAPLWAVAAYDGL----AWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWV 76
Cdd:COG0555     1 MSRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGlgwaEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  77 LARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQD-------TPYLLLYGNVFFNLPVLVRAAYQGFA 149
Cdd:COG0555    81 LVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPlgikvafTPLGIVLAQTFVSLPFVVRTVQPVLE 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1067579743 150 QVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVF 190
Cdd:COG0555   161 ELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 39-253 1.76e-24

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 102.50  E-value: 1.76e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  39 WRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLlw 118
Cdd:COG1177    50 YAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGL-- 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 119 rgrQDTPYLLLYGNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFG 198
Cdd:COG1177   128 ---SGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFV 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1067579743 199 LALLLGGSRYATVEVEIYQLVMFELDMAgASALVWLVLGVTAAAGLLYAWFGRRA 253
Cdd:COG1177   205 ITLFLAGPGVTTLPVYIYSMIRRGISPE-INALSTLLILLSLLLLLLAERLRRRG 258
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 59-253 1.86e-23

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 98.58  E-value: 1.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  59 AAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQD--------TPYLLLY 130
Cdd:COG4149    16 ALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEElfgislvfTWTGAVL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 131 GNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYC---FSGFGLALLLGGSR 207
Cdd:COG4149    96 ASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARAlgeFGATLMFAGNIPGK 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1067579743 208 YATVEVEIYQLVMfELDMAGASALVWLVLGVTAAAGLLYAWFGRRA 253
Cdd:COG4149   176 TQTLPLAIYDAVE-AGDYAAAHALSLILLAISFVVLLLLNLLNRRR 220
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 59-252 3.40e-21

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 91.54  E-value: 3.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  59 AAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL-----WRGRQD--TPYLLLYG 131
Cdd:TIGR02141   7 AVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIgklleLFGISLvfTFTGAVLA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 132 NVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVF---LYCFSGFGLALLLGGSRY 208
Cdd:TIGR02141  87 SVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFaraLGEFGATLMFAGNIPGET 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1067579743 209 ATVEVEIYQLVMFELDMAGASALVWLVLGVTAAAGLlyAWFGRR 252
Cdd:TIGR02141 167 QTIPLAIYDAVESDYELAHQLSLVLLAISLIVLLLV--ELLNKR 208
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 41-245 2.61e-19

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 86.68  E-value: 2.61e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  41 AVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRG 120
Cdd:TIGR01581  12 SALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 121 RQD-------TPYLLLYGNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYC 193
Cdd:TIGR01581  92 LEAagiqvifSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARA 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1067579743 194 FSGFGLALLLGGSRYA---TVEVEIY-QLVMFELDMAGASALvwLVLGVTAAAGLL 245
Cdd:TIGR01581 172 LGEFGATLMFAGSIQGktrTLPLAIYlNIQSDNIEAAVASAL--LLLVIAFLLLLV 225
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 4-253 1.05e-15

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 77.74  E-value: 1.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   4 RRWAVRGAFSLLPSAFLAVMVVAPLW-----AVAAYDGL---AWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAW 75
Cdd:PRK15050   19 RRRLRPLLWLLLPLLVLAPLVVYPLVrvvlqSLTGEHGLglaTYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLAL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  76 VLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL------WRGRQDTPYLLLYG-------NVFFNLPVLVR 142
Cdd:PRK15050   99 VLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVnialqrLFGLEAPPLDFLYSpggvilaEITFYTPFVVR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 143 AAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQLVMFE 222
Cdd:PRK15050  179 PLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVD 258

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1067579743 223 LDMAGASALVWLVLGVTAAAGLLYAWFGRRA 253
Cdd:PRK15050  259 FDYPTACAIAVVNLALSLGLYALYRRVNRRA 289
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 271-501 2.99e-15

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 75.94  E-value: 2.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 271 GEYVLLAFSVAVLSVCCLFPLSAIVVKAWSAG--ESRRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAA------- 341
Cdd:COG0555     8 GFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGwaEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVlvryrfp 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 342 ARRLVwmRGLVFLPFMVSPVCVSAGVLLLY--PGWTASLPLLLAMYAL------------LAYPFVAKDVLSAWDALPPD 407
Cdd:COG0555    88 GKRLV--DALVDLPFALPTAVAGIALLLLFgpNGWLGQLLAPLGIKVAftplgivlaqtfVSLPFVVRTVQPVLEELDPE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 408 YGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLS---RPEWQTLTTLIYaylGRAGEDNYARAM 484
Cdd:COG0555   166 LEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAgnlPMKTEILPLLIY---LKLEEGDYAGAT 242

                         250
                  ....*....|....*..
gi 1067579743 485 VLTLLLSAFAVCIFLLL 501
Cdd:COG0555   243 AIALVLLLISFLLLLLI 259
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 347-501 3.49e-15

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 75.53  E-value: 3.49e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 347 WMRGLVFLPFMVSPVCVSAGVLLLY--PGWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTAC 424
Cdd:COG1177    98 LLLALLLLPLVVPGIVLGVALLLLFsaLGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFR 177

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067579743 425 RITFPLLKPALRRGLTLAAATCVGEFAATLFLSRPEWQTLTTLIYAYLgRAGEDNYARAM-VLTLLLSAFAVCIFLLL 501
Cdd:COG1177   178 RVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMI-RRGISPEINALsTLLILLSLLLLLLAERL 254
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 11-190 1.89e-14

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 73.54  E-value: 1.89e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  11 AFSLLPSAFLAVMVVAPLWAVAAYDGLA-WRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVL 89
Cdd:TIGR00969  20 GIALLYVFLILILPVAALFVQAFSKGLGqFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLD 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  90 RLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQDTPYLLLY-------GNVFFNLPVLVRAAYQGFAQVPAARLQTARTL 162
Cdd:TIGR00969 100 ALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFtwpgmalAMIFVSLPFVVREVQPVLEELGTEAEEAAATL 179

                         170       180
                  ....*....|....*....|....*...
gi 1067579743 163 GAGAWRRFWDIEMPVLRPWLAGGVCLVF 190
Cdd:TIGR00969 180 GASGWQTFWRVTLPSIRWALLYGVVLTF 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
273-513 3.70e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 74.81  E-value: 3.70e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 273 YVLLAFSVAVLSVCCLFPLSAIVVKAWSAGES--RRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRL----- 345
Cdd:COG1178    10 RLLLLLLALLLALLVLLPLLALLLRAFTDGLAnfWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTdfpgr 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 346 VWMRGLVFLPFMVSPVCVSAGVLLLYP--GWTASLPLLLAMYALL---------------AYPFVAKDVLSAWDALPPDY 408
Cdd:COG1178    90 RLLRWLLLLPLALPPYVVALAWIALFGpnGLLNTLLRALFGLEPPdiyglggiilvlvlfNYPYVYLLLRAALRSIDASL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 409 GRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLsRPEWQTLTTLIYAYLgrAGEDNYARAMVLTL 488
Cdd:COG1178   170 EEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-GGGYTTLTTAIYQAW--LGDFDLGAAAALAL 246

                         250       260
                  ....*....|....*....|....*
gi 1067579743 489 LLSAFAVCIFLLLDNGEGGKRTETL 513
Cdd:COG1178   247 VLLLLVLLLLLLERRLRRRRRYATV 271
modB PRK09421
molybdate ABC transporter permease subunit;
67-190 2.32e-13

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 69.57  E-value: 2.32e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  67 LPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQDtpyllLYGNVF-FN--------- 136
Cdd:PRK09421   26 LPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE-----WFGISFaFSwrgaalaaa 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1067579743 137 ---LPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVF 190
Cdd:PRK09421  101 vmaFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
39-254 5.06e-13

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 69.78  E-value: 5.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  39 WRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARlAFPGRALVLRLLMLPFVMPTLVAGV------------- 105
Cdd:COG1175    65 YARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALiwkwlfnpdygll 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 106 -GVLALFGADGLLWRGRQDTP-YLLLYGNVFFNLP---VLVRAAYQGfaqVPAARLQTARTLGAGAWRRFWDIEMPVLRP 180
Cdd:COG1175   144 nALLGALGLEPINWLGDPSLAlPAVIIVTVWKGTGfnmLIFLAGLQS---IPRELYEAARIDGASPWQRFRRITLPLLRP 220

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067579743 181 WLAGGVCLVFLYCFSGFGLALLLG----GSRYATVEVEIYQLVMFELDMAGASALVWLVLGVTAAAGLLYAWFGRRAV 254
Cdd:COG1175   221 TILFVLVLSTIGALQVFDLVYVLTgggpGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 52-236 8.09e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 8.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  52 LAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQDTPYLLLYG 131
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 132 NVFFnLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATV 211
Cdd:cd06261    81 LLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                         170       180
                  ....*....|....*....|....*.
gi 1067579743 212 EVEIYQLV-MFELDMAGASALVWLVL 236
Cdd:cd06261   160 GTGLLLIFaILFPGDLGVAAAVALIL 185
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 391-501 9.72e-13

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 67.38  E-value: 9.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 391 PFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLS---RPEWQTLTTL 467
Cdd:COG4149   103 PLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGATLMFAgniPGKTQTLPLA 182

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1067579743 468 IYAYLgRAGedNYARAMVLTLLLSAFAVCIFLLL 501
Cdd:COG4149   183 IYDAV-EAG--DYAAAHALSLILLAISFVVLLLL 213
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-511 1.25e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 70.09  E-value: 1.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   8 VRGAFSLLPSAFLAVMVVAPLWAV---AAYD------GLA-WRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVL 77
Cdd:TIGR03262   2 IARLLLAGMILALLLFLLLPLLALltkSVYDsdgdfiGLAnFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  78 ARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL--WRGRQDT--PYLLLYGNVFFNLPVLVRAAYQGFAQVPA 153
Cdd:TIGR03262  82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLkgLLGGFSIygFWGIVIGEVFYTFPHALMILVTALSLADG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 154 ARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSrYATVEVEIYQLVMFELDMAGASALVW 233
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD-YNVLATDIYKQVIGQQNFPMGAVVGV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 234 LVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFSVAVLSVCCLFPLSAIV----VKAW------SAGE 303
Cdd:TIGR03262 241 LLLLPALLAFGIDRAIQRRQRAQLSSRSVPYQPKPNRVRDAACLVYCAIISAALLAVVGMAVyaslVKFWpynlslTLKH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 304 SRRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRL---VWMRGLVFLPFMVsPVCVSAGVLLL-------YPG 373
Cdd:TIGR03262 321 YNFDLMDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTrgfGLLRGVLRFLAIL-PMAVPGLVLGLgyifffnAPT 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 374 -------WTASLPLLLAMYALLAYPFVAkdVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPAL---RRGLTLAA 443
Cdd:TIGR03262 400 nplnglyGTMALLVLCTVVHFYTVSHLT--AVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAIldiARYLFVNS 477

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067579743 444 ATCVgefAATLFLSRPEWQTLTTLIYAyLGRAGEDNYARAMVLTLLLSAFAVCIFLLLDNGEGGKRTE 511
Cdd:TIGR03262 478 MTTV---SAVVFLYSPDTKLASVAILN-MDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRTQ 541
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 18-190 4.00e-12

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 66.58  E-value: 4.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  18 AFLAVMVVAPLWAVAAY-DGLAWRA---VLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLM 93
Cdd:TIGR02139  14 TYLSLIVLLPLAALFLKaSQLGWAGfwqIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  94 LPFVMPTLVAGVGVLALFGADGllWRGR---------QDTPYLLLYGNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGA 164
Cdd:TIGR02139  94 LPFALPTAVAGIALATLYSPNG--WIGSflaplgikiAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGA 171

                         170       180
                  ....*....|....*....|....*.
gi 1067579743 165 GAWRRFWDIEMPVLRPWLAGGVCLVF 190
Cdd:TIGR02139 172 SRWQTFWRVILPALLPALLTGFALAF 197
cysT CHL00187
sulfate transport protein; Provisional
 37-190 6.57e-12

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 65.42  E-value: 6.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  37 LAWRAVLSDAYMLkrlawTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGL 116
Cdd:CHL00187   47 KATEPIALSAYSL-----TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGW 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 117 L-----WRGRQD--TPYLLLYGNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLV 189
Cdd:CHL00187  122 IghllsHLGIQIvfTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201


                  .
gi 1067579743 190 F 190
Cdd:CHL00187  202 F 202
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 19-188 1.80e-11

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 64.33  E-value: 1.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  19 FLAVMVVAPLWAV---AAYDGL-AWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLML 94
Cdd:TIGR02140  12 LLFLLLLLPLALIfqeAFEKGFgVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  95 PFVMPTLVAGVGVLALFGADGLLWRGRQDTPYLLLYG-------NVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAW 167
Cdd:TIGR02140  92 PFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSlpgivlaTMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWW 171

                         170       180
                  ....*....|....*....|.
gi 1067579743 168 RRFWDIEMPVLRPWLAGGVCL 188
Cdd:TIGR02140 172 QTFWRVTLPNIKWGLLYGVIL 192
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
14-190 6.39e-11

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 63.23  E-value: 6.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  14 LLPSAFLAVMVVAPLWAvaaydglAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLM 93
Cdd:PRK10971   29 LLPLSALVMQLSQMSWA-------QYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMD 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  94 LPFVMPTLVAGVGVLALFGADGllWRGRQDTPYLLLYGN---------VFFNLPVLVRAAYQGFAQVPAARLQTARTLGA 164
Cdd:PRK10971  102 LPFALPTAVAGLTLASLFSVNG--WYGEWLAKFDIKVTYtwlgiavamAFTSIPFVVRTVQPVLEELGPEYEEAAETLGA 179

                         170       180
                  ....*....|....*....|....*.
gi 1067579743 165 GAWRRFWDIEMPVLRPWLAGGVCLVF 190
Cdd:PRK10971  180 TRWQSFRKVVLPELSPALLAGVALSF 205
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 59-191 8.79e-11

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 62.78  E-value: 8.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  59 AAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADG-----LLWRGRQDTPYLLLY--- 130
Cdd:PRK09497   72 ALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGylnefLLWLGVIDTPIRIMFtes 151

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067579743 131 ----GNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFL 191
Cdd:PRK09497  152 aviiGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLL 216
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 38-194 2.35e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 61.26  E-value: 2.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  38 AWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL 117
Cdd:COG0395    62 NYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLL 141

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1067579743 118 wrgrqDTPYLLLYGNVFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGgvclVFLYCF 194
Cdd:COG0395   142 -----NTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT----VAIFTF 209
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
5-188 3.82e-10

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 60.92  E-value: 3.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743   5 RWAVRGAFSLLpSAFLAVMVVAPLWAVAAYDGL--AWRAvLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAF 82
Cdd:PRK11602   19 KWFLIGIGMLV-SAFILVVPMIYIFVQAFSKGLmpVLQN-LADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  83 PGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLL--WRGRQDTPYLLLYG-----NVFFNLPVLVRAAY-----QGFAQ 150
Cdd:PRK11602   97 PGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLggWLDEHNLQLMFSWPgmvlvTIFVTCPFVVRELVpvmlsQGSQE 176

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1067579743 151 VPAARLqtartLGAGAWRRFWDIEMPVLRPWLAGGVCL 188
Cdd:PRK11602  177 DEAAIL-----LGASGWQMFRRVTLPNIRWALLYGVVL 209
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 391-501 2.03e-08

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 55.54  E-value: 2.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 391 PFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRPEWQTLTTLIYA 470
Cdd:COG1176   167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQ 246

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1067579743 471 YLGRAGedNYARAMVLTLLLSAFAVCIFLLL 501
Cdd:COG1176   247 QFLSAL--NWPLAAALAVVLLLIVLLVLLLY 275
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 348-500 2.18e-08

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 54.71  E-value: 2.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 348 MRGLVFLPFMVSPVCVSAGVLLLYP--------------GWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAA 413
Cdd:TIGR01581  59 LDTLLDLPMVLPPLVAGLALLLLFGrngllgpyleaagiQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVAR 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 414 GLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFL---SRPEWQTLTTLIYAYLgraGEDNYARAMVLTLLL 490
Cdd:TIGR01581 139 SLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFagsIQGKTRTLPLAIYLNI---QSDNIEAAVASALLL 215

                         170
                  ....*....|
gi 1067579743 491 SAFAVCIFLL 500
Cdd:TIGR01581 216 LVIAFLLLLV 225
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 347-500 2.18e-07

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 52.39  E-value: 2.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 347 WMRGLVFLPFMVSPVCVSAGVLLLY--PGWTASLPLL------------LAMYALLAYPFVAKDVLSAWDALPPDYGRAA 412
Cdd:TIGR02140  84 LLLTIIDLPFSVSPVVAGLIFVLLYgsQGWLGPWLEDldikiifslpgiVLATMFVTCPFVARELIPVMEEQGTEQEEAA 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 413 AGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLS---RPEWQTLTTLIYAylgRAGEDNYARAMVLTLL 489
Cdd:TIGR02140 164 LTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSghiRGKTNTLPLHVEL---LYNEYQSYAAFAAASL 240

                         170
                  ....*....|.
gi 1067579743 490 LSAFAVCIFLL 500
Cdd:TIGR02140 241 LALLALVTLVL 251
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 391-495 2.69e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 50.74  E-value: 2.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 391 PFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRPEWQTLTTLIYA 470
Cdd:cd06261    86 PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLL 165

                          90       100
                  ....*....|....*....|....*
gi 1067579743 471 YLGRAGEDNYARAMVLTLLLSAFAV 495
Cdd:cd06261   166 IFAILFPGDLGVAAAVALILLLLSL 190
cysT CHL00187
sulfate transport protein; Provisional
 391-474 6.37e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 47.32  E-value: 6.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 391 PFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRP---EWQTLTTL 467
Cdd:CHL00187  150 PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNipfKDLVASVL 229


                  ....*..
gi 1067579743 468 IYAYLGR 474
Cdd:CHL00187  230 IFQSLEQ 236
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
391-463 6.59e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 47.83  E-value: 6.59e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1067579743 391 PFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLS-RPEWQT 463
Cdd:PRK10971  153 PFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAgNIAWKT 226
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 69-171 3.58e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 44.46  E-value: 3.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  69 LGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLAL------FGADGLLWrgrqdTPYLLLYGNVFFNLPVLVR 142
Cdd:NF038017   15 IGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLlsrsgpLGFLGLLY-----TPTAMIIAQAVLALPIVAG 89

                          90       100
                  ....*....|....*....|....*....
gi 1067579743 143 AAYQGFAQVPAARLQTARTLGAGAWRRFW 171
Cdd:NF038017   90 LTLAAVQGLDPELRLQILSLGATRWQALW 118
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
305-501 1.26e-04

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 43.97  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 305 RRVLMESETWQAVWNTLRFSAAAVFAAAVLGVVYAAAARRLVWMRG----LVFLPFMVSPVCVSAGVLLLY--------- 371
Cdd:COG1175    66 ARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGffrtLFFLPWVISPVVVALIWKWLFnpdygllna 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 372 ---------PGWTASLPLLLAMYALLA----YPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRG 438
Cdd:COG1175   146 llgalglepINWLGDPSLALPAVIIVTvwkgTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFV 225

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1067579743 439 LTLAAATCVGEFAATLFLSR----PEWQTLTTLIYAYLGRAGEDNYARAM--VLTLLLSAFAVCIFLLL 501
Cdd:COG1175   226 LVLSTIGALQVFDLVYVLTGggpgNSTTTLVLYIYQTAFQQFDFGYASAIavVLFLIILVLTLLQLRLL 294
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 60-190 1.36e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 43.82  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  60 AATCVLVLplGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLlwrgrQDTPYLLLYGNVFFNLPV 139
Cdd:PRK09500   69 SATFATLI--GSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGI-----QLGFWSLLFAHITFCLPF 141

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1067579743 140 LVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVF 190
Cdd:PRK09500  142 VVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSF 192
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 273-489 5.15e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 42.02  E-value: 5.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 273 YVLLAFSVAVLSVCCLFPLSAIVVKAWSAGESR--RVLMESETWQAVWNTLrfsAAAVFAAAVLGVVYAAAA-------- 342
Cdd:COG4208    19 WLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAylAALTDPDALSAIRLTL---LVAAIAVPLNLVFGVAAAwaitrfef 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 343 --RRLVWMrgLVFLPFMVSPVCvsAGV--LLLY--PGWTASLPLLL------------AMYALLAYPFVAKDVLSAWDAL 404
Cdd:COG4208    96 rgKRLLIT--LIDLPFSVSPVV--AGLiyVLLFgaQGWFGPWLEAHdikiifavpgivLATIFVTFPFVARELIPLMQEQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 405 PPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLS---RPEWQTLTTLIY-AYLGRAGEDNY 480
Cdd:COG4208   172 GTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSghiRGETNTLPLHVEiLYNEYNFVAAF 251


                  ....*....
gi 1067579743 481 ARAMVLTLL 489
Cdd:COG4208   252 AVASLLALL 260
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 59-191 5.96e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 42.00  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  59 AAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLV---AGVGVLALFGA--DGLLWRGRQDTPYLLLYGN- 132
Cdd:PRK10683  106 AAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIrvyAWMGILKNNGVlnNFLLWLGVIDQPLTILHTNl 185

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067579743 133 ------VFFNLPVLVRAAYQGFAQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFL 191
Cdd:PRK10683  186 avyigiVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFI 250
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 391-469 7.03e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 41.53  E-value: 7.03e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1067579743 391 PFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRPEWQTLTTLIY 469
Cdd:PRK15050  174 PFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIY 252
modB PRK09421
molybdate ABC transporter permease subunit;
411-495 2.28e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 39.52  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 411 AAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATL-FLSR--PEWQTLTTLIYAYLGRAGEDNYA-RAMVL 486
Cdd:PRK09421  125 AARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATItFVSNipGETQTIPSAMYTLIQTPGGESAAaRLCII 204


                  ....*....
gi 1067579743 487 TLLLSAFAV 495
Cdd:PRK09421  205 SIAIALASL 213
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 159-253 4.48e-03

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 39.02  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 159 ARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQL----VMFELDMAGASALVWL 234
Cdd:COG4132   185 AALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAYALTGGNYNLVPIRIGALisgdVLLDPNLGAALALGMI 264

                          90
                  ....*....|....*....
gi 1067579743 235 VlgVTAAAGLLYAWFGRRA 253
Cdd:COG4132   265 V--IMALVMALYQWLQRRS 281
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 70-252 7.25e-03

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 37.66  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  70 GVPVAWVLARLA-FPGRALVLRLLMLPFVMPTLVAGvgvLALFGADGLLWRGRQDTPYLLLYgnVFFNLPVLVRAAYQGF 148
Cdd:pfam00528   1 GIPLGIIAALRRgRRLDRLLRPLIDLLQALPSFVLA---ILLVVIAILSILGHGILPAIILA--LLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743 149 AQVPAARLQTARTLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEV-EIYQLVMFELDMAG 227
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLiEAILGYDYPEIQGP 155

                         170       180
                  ....*....|....*....|....*
gi 1067579743 228 ASALVWLVLGVTAAAGLLYAWFGRR 252
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLDPR 180
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 14-186 8.18e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 38.21  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  14 LLPSAFLAVMVVapLWAVAAYDGL--------------AWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLAR 79
Cdd:COG0600    13 LLPLLSLALLLA--LWELAARLGLvppfllpspsavlaALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067579743  80 LAFpGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLlwrgrqdTPYLLLYGNVFFnlPVLVrAAYQGFAQVPAARLQTA 159
Cdd:COG0600    91 SRL-LRRLLDPLLVFLRPIPPLALAPLLILWFGIGEA-------SKIFVIFLGAFF--PILL-NTAAGVRSVDPELLELA 159

                         170       180
                  ....*....|....*....|....*..
gi 1067579743 160 RTLGAGAWRRFWDIEMPVLRPWLAGGV 186
Cdd:COG0600   160 RSLGASRWQILRKVVLPAALPYIFTGL 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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