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Conserved domains on  [gi|1067529799|gb|AOQ26646|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lerista storri]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-228 6.05e-135

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 387.63  E-value: 6.05e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00124  230 VLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00124  310 SGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 228
Cdd:MTH00124  390 PTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-228 6.05e-135

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 387.63  E-value: 6.05e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00124  230 VLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00124  310 SGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 228
Cdd:MTH00124  390 PTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-229 2.18e-47

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 163.33  E-value: 2.18e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:COG1008   246 LLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:COG1008   326 LQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV 405

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPF 229
Cdd:COG1008   406 NPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-229 3.52e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 146.62  E-value: 3.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:TIGR01972 240 ILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLaALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELG 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:TIGR01972 320 ISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKV 399

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEP-THTREHLLMALHTIPMLLLMLKPQLIMGPF 229
Cdd:TIGR01972 400 NPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-171 4.45e-40

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 139.76  E-value: 4.45e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   2 LAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 81
Cdd:pfam00361 120 LAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQ 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  82 GAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:pfam00361 200 AAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279

                         170
                  ....*....|.
gi 1067529799 161 NLTIIMTGLGT 171
Cdd:pfam00361 280 WIFLVLAGVVG 290
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-228 6.05e-135

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 387.63  E-value: 6.05e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00124  230 VLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00124  310 SGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 228
Cdd:MTH00124  390 PTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-229 1.03e-125

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 364.24  E-value: 1.03e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00068  230 ILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSF 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00068  310 SGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPF 229
Cdd:MTH00068  390 NWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-228 3.24e-122

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 355.35  E-value: 3.24e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00110  230 VLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSF 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00110  310 MGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 228
Cdd:MTH00110  390 NITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-227 1.63e-100

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 299.95  E-value: 1.63e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00127  231 VLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGF 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00127  311 TGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWS 390

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMG 227
Cdd:MTH00127  391 PWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-225 8.67e-93

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 279.90  E-value: 8.67e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00206  226 VLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGF 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00206  306 KGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWS 385

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLI 225
Cdd:MTH00206  386 NFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-226 7.87e-75

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 234.10  E-value: 7.87e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLN-PLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:MTH00044  231 ILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWG 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:MTH00044  311 INGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISW 390

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIM 226
Cdd:MTH00044  391 SILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-226 5.56e-69

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 218.48  E-value: 5.56e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00163  218 ILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGL 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00163  298 MGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWS 377

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIM 226
Cdd:MTH00163  378 KLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-227 5.10e-64

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 205.07  E-value: 5.10e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00150  189 ILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGW 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00150  269 VGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYS 348

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMG 227
Cdd:MTH00150  349 PWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-226 5.21e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 190.19  E-value: 5.21e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00205  222 ILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGM 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00205  302 NGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSS 381

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIM 226
Cdd:MTH00205  382 KISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-225 4.82e-57

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 188.03  E-value: 4.82e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00014  224 ILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGW 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00014  304 QGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSS 383

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067529799 161 NLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLI 225
Cdd:MTH00014  384 LSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-229 2.18e-47

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 163.33  E-value: 2.18e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:COG1008   246 LLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:COG1008   326 LQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV 405

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPF 229
Cdd:COG1008   406 NPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-229 3.52e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 146.62  E-value: 3.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:TIGR01972 240 ILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLaALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELG 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:TIGR01972 320 ISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKV 399

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEP-THTREHLLMALHTIPMLLLMLKPQLIMGPF 229
Cdd:TIGR01972 400 NPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-171 4.45e-40

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 139.76  E-value: 4.45e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   2 LAAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 81
Cdd:pfam00361 120 LAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQ 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  82 GAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:pfam00361 200 AAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279

                         170
                  ....*....|.
gi 1067529799 161 NLTIIMTGLGT 171
Cdd:pfam00361 280 WIFLVLAGVVG 290
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-230 8.34e-40

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 143.42  E-value: 8.34e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:PRK05846  248 LLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLG 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:PRK05846  328 IQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQV 407

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPFS 230
Cdd:PRK05846  408 NPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPLLDVIH 478
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-228 3.53e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 138.66  E-value: 3.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:MTH00204  246 ILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:MTH00204  326 LVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEY 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 228
Cdd:MTH00204  406 SLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIIDL 474
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-182 2.30e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 133.64  E-value: 2.30e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:MTH00217  243 ILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIqTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQG 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:MTH00217  323 LVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEY 402

                         170       180
                  ....*....|....*....|...
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMF 182
Cdd:MTH00217  403 SYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-226 1.25e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 123.88  E-value: 1.25e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:MTH00226  267 LLAGILLKLGGYGLVRLSWPILPLGAQNLAPAVIaMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIG 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:MTH00226  347 LTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNW 426

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1067529799 160 SNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIM 226
Cdd:MTH00226  427 NPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFIL 493
ndhD CHL00011
NADH dehydrogenase subunit 4
 2-181 8.24e-24

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 99.25  E-value: 8.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   2 LAAILLKLGGYGIIRIAPMLNPLTTNMFYPF-IILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:CHL00011  249 LAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGL 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERThsRTLLLAR--GLQLILPLMSSWWLLANLMNMALPPTINITGELL----IMT 154
Cdd:CHL00011  329 NGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIIT 406

                         170       180       190
                  ....*....|....*....|....*....|
gi 1067529799 155 STFNWSNLTIIMT---GLGTLLTATYSLHM 181
Cdd:CHL00011  407 SQKYLLMPKILITfvmAIGMILTPIYLLSM 436
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-223 2.36e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 97.85  E-value: 2.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPFiiLATWGIIMT---STICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQ 77
Cdd:PRK06473  242 LLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATP 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  78 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGL---QLILPLMSSWWLLANLMNMALPPTINITGELLIMT 154
Cdd:PRK06473  320 LSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFR 399

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1067529799 155 STFNWSNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQ 223
Cdd:PRK06473  400 GSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERLPALVLAVLIVVLGIQPS 468
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-186 3.28e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 94.06  E-value: 3.28e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMF--YPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 78
Cdd:COG0651   242 LLSGLLTKVGVYAILRVLTLLFGADPALFlgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  79 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFN 158
Cdd:COG0651   322 GLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALE 401

                         170       180
                  ....*....|....*....|....*....
gi 1067529799 159 WSN-LTIIMTGLGTLLTATYSLHMFLMTQ 186
Cdd:COG0651   402 AGAwLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-181 5.52e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 93.94  E-value: 5.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYP-FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 79
Cdd:PRK12561  222 ILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLG 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHsrTLLLAR--GLQLILPLMSSWWLLANLMNMALPPTINITGELLIM---- 153
Cdd:PRK12561  302 ISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNmgGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFlgit 379

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1067529799 154 -----TSTFNwsNLTIIMTGLGTLLTATYSLHM 181
Cdd:PRK12561  380 ssdvySSTFR--TITILLAAVGLILTPIYLLSM 410
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-225 6.48e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 94.00  E-value: 6.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   2 LAAILLKLGGYGIIRIAPMLNPLTTNMFYP-FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:PRK02546  251 LAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGT 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTS----- 155
Cdd:PRK02546  331 SGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVGfatsd 410

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067529799 156 --TFNWSNLTIIMTGLGTLLTATYSLHM----FLMTQRGKLTTH--MISTEPthtREHLLMALHTIPMLLLMLKPQLI 225
Cdd:PRK02546  411 ayTLPFRVVVVFLAAVGVILTPIYLLSMlreiFFGPENKELVSHekLVDAEP---REVFIIACLLVPIIGIGLYPKLV 485
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-179 3.02e-21

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 91.12  E-value: 3.02e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIapmLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:MTH00094  188 LLAGLLLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGK 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:MTH00094  265 LSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKN 344

                         170
                  ....*....|....*....
gi 1067529799 161 NLTIIMTGLGTLLTATYSL 179
Cdd:MTH00094  345 KFSFFFIFFYFLVSFYYSL 363
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-193 8.29e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 78.99  E-value: 8.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYPfiILATWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQ 77
Cdd:PRK07363  242 LLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQ 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  78 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLI---LPLMSSWWLLANLMNMALPPTINITGELLIMT 154
Cdd:PRK07363  320 LSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1067529799 155 STFNWSNLTIIMTGLGTLLTATYSLHMFLMTQRGKLTTH 193
Cdd:PRK07363  400 GSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNK 438
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-177 1.65e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 72.22  E-value: 1.65e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIA----PMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQT 76
Cdd:PRK08375  239 LLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  77 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTST 156
Cdd:PRK08375  319 PLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398

                         170       180
                  ....*....|....*....|....
gi 1067529799 157 F---NWSNLTIIMtgLGTLLTATY 177
Cdd:PRK08375  399 VeagQWLVLAVLL--ASSLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-220 7.37e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 70.39  E-value: 7.37e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRI-------APMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASL 73
Cdd:PRK12667  260 MLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  74 IQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIM 153
Cdd:PRK12667  340 IGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLF 419

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067529799 154 TSTFNWSN-LTIIMTGLGTLLTATYSLHMFLMTQRGKLTthmiSTEPTHTREHLLMALHTIPMLLLML 220
Cdd:PRK12667  420 NALLESGFyLPALVLLIASAISLVGYFRAWYSLFFGKPK----SGEEVEHKESPSMSVVILVLALAVL 483
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-227 1.52e-13

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 69.19  E-value: 1.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTNMFYP--FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 78
Cdd:PRK06458  251 LLSGVLLNVALYAVLRYYILIDAAIGSDFPGrlLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  79 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFN 158
Cdd:PRK06458  331 GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLA 410

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1067529799 159 ---WSNLTIIMTGLGTLLTAtyslhMFLMTQRgkltthMISTEPTH-TREHLLMALHTIPMLLLMLKPqLIMG 227
Cdd:PRK06458  411 rgpLLIAILLLLLLTLAFAA-----LVRRVAG------MVFGEPPEaVNRGDLGWLTTSPMFVHLVLV-LVLG 471
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-220 6.74e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 61.71  E-value: 6.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNpLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQtqwSLTG 82
Cdd:COG1009   250 AATMVKAGVYLLARLSPLFA-LSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  83 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWSNL 162
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGL 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1067529799 163 TIIMTGLGTL---LTATYSLHMFLMTQRGKLTTHmistEPTHTRE-HLLMalhTIPMLLLML 220
Cdd:COG1009   406 GPLLLAVALLgafLTAFYSFRLFFLVFFGKPRPK----TPKHPHEsPWLM---TLPLVVLAV 460
PRK12650 PRK12650
DUF4040 family protein;
3-179 1.60e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 60.83  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLTTnMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTG 82
Cdd:PRK12650  247 AAAVVKAGIYLLLRFSPVFHDVAV-WNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  83 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTIN-ITGELLIM----TSTF 157
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGfVSKEGMLTafleAPGG 405

                         170       180
                  ....*....|....*....|...
gi 1067529799 158 NWSN-LTIIMTGLGTLLTATYSL 179
Cdd:PRK12650  406 NAGVvLLLVGAALGAVFTFAYSA 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-172 3.87e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 56.47  E-value: 3.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   4 AILLKLGGYGIIRiapmLNPLTTNMFYPFIILATWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:PRK12647  235 ATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAI 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAP 390

                         170
                  ....*....|..
gi 1067529799 161 NLTIIMTGLGTL 172
Cdd:PRK12647  391 LWSLILTVAAVL 402
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 3-177 4.10e-09

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 56.31  E-value: 4.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLT--TNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:PRK08377  245 SAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGV 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWS 160
Cdd:PRK08377  325 DAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAG 404

                         170
                  ....*....|....*...
gi 1067529799 161 NLTIIMTGLG-TLLTATY 177
Cdd:PRK08377  405 YTWPVALVLGaSVVEAVY 422
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-184 6.09e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 55.59  E-value: 6.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLTT-----NMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQ 77
Cdd:PRK06589  249 AVIVVKTGLFCIYKILLYIFGLSYlqrifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTP 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  78 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTF 157
Cdd:PRK06589  329 KALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAAS 408

                         170       180
                  ....*....|....*....|....*....
gi 1067529799 158 NWSN--LTIIMTGLGTLLTATYSLHMFLM 184
Cdd:PRK06589  409 EQNQpwLSIIVMLVVIASSILSALYLLKI 437
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-220 6.42e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 52.67  E-value: 6.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLV---IAASLIQTQWS 79
Cdd:PRK06525  246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMffgLSLAILGSRLA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNW 159
Cdd:PRK06525  326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067529799 160 SNLTIIMTGLG--TLLTATYSLHMFLmtqrgKLTTHMISTEPTHTREHL--LMALHTIPMLLLML 220
Cdd:PRK06525  406 SVEYWILLPAMvlLLIESVASFAWFL-----RWFGRVVFGEPSEAVADAapLPGSMKLVLIVLIV 465
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-156 3.25e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.50  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  32 FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTSSMLFCLANT---NYERT 108
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1067529799 109 HSRTLLlarGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTST 156
Cdd:PRK12662  362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-98 1.15e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.98  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPML--NPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 78
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL 322

                          90       100
                  ....*....|....*....|
gi 1067529799  79 SLTGAIVLMVAHGLTSSMLF 98
Cdd:PRK08676  323 ALFWMLFHMLAHSLVKSGLF 342
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-179 1.64e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.77  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLTTnmFYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 81
Cdd:PRK12644  242 AAAMVKAGIYLVARLAPGFADVPV--WRPTVLvLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAAL 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  82 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLAnLMNMA-LPPTINITG-----ELLIMTS 155
Cdd:PRK12644  320 AGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALA-AASMAgLPPLLGFVAkeaalEAVLHDG 398

                         170       180
                  ....*....|....*....|....*
gi 1067529799 156 TFNW-SNLTIIMTGLGTLLTATYSL 179
Cdd:PRK12644  399 ALGPaGPVVLAGIVLGSILTVAYSL 423
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-157 1.73e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 48.57  E-value: 1.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIapMLNPLTTNMFYPFIIL------ATWGIIMTsticLRQTDLKSLIAYSSVSHMGLV---IAA 71
Cdd:PRK08667  242 LMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIIlmgIGL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  72 SLIQTQW--------SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPT 143
Cdd:PRK08667  316 YVIFGVYgldtlallALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPF 395

                         170
                  ....*....|....
gi 1067529799 144 INITGELLIMTSTF 157
Cdd:PRK08667  396 NGFASELLLYESFF 409
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-127 2.68e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 47.64  E-value: 2.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPLTTnmfyPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIqtqwsl 80
Cdd:PRK07234  221 LLSGVVVKAGVFPLVRCALDVPGLDL----IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV------ 290

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1067529799  81 tgAIVLMVAHGLTSSMLFCLANTNYERTHS--RTLLLARGLQLILPLMS 127
Cdd:PRK07234  291 --GGLYALAHGLVKSTLFLCAGALPSRNFTelISQMLGIGKWIPLTMAS 337
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-184 4.18e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 47.25  E-value: 4.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLTTNMFYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 81
Cdd:PRK07691  248 GALLTKVGVYAIARTFTLFFSHDTSFTHYLIlILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMI 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  82 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWSN 161
Cdd:PRK07691  328 GAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGF 407

                         170       180
                  ....*....|....*....|....
gi 1067529799 162 LTIIMTGLGTLLTATYS-LHMFLM 184
Cdd:PRK07691  408 YVSGIIVLLSSLLVLYSvIKIFLK 431
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-174 5.54e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 46.63  E-value: 5.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  10 GGYGIIRI-----APMLNPLTTNMFypFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMG---------LVIAASLIQ 75
Cdd:PRK08376  265 GLYALARVlfsiyGPAINLATVGWV--IIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGymllglgvgLAALGDPAM 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  76 TQW---SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLI 152
Cdd:PRK08376  343 ASYgeiALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                         170       180
                  ....*....|....*....|..
gi 1067529799 153 MTSTFNWSNLTIIMTGLGTLLT 174
Cdd:PRK08376  423 YESSALFNPILGVIAMIGSVLT 444
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-94 1.70e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 45.20  E-value: 1.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   8 KLGGYGII-RIAPM-LNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIV 85
Cdd:PRK05777  247 KIAAFAVLlRLLVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326


                  ....*....
gi 1067529799  86 LMVAHGLTS 94
Cdd:PRK05777  327 YLLAYLFMT 335
PRK12646 PRK12646
DUF4040 family protein;
3-219 1.71e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 45.52  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNpLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLV-----IAASLIQTQ 77
Cdd:PRK12646  249 SATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQ 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  78 ---------WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLAnLMNMALPPTIN--I 146
Cdd:PRK12646  328 qdaiasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIA-ALSMAGVPFLNgfL 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799 147 TGELLI--MTSTFNWSN----LTIIMTGLG---TLLTATYSLHMFLMTQRGKLTTHMISTEPTHtrEHLLMALHTIPMLL 217
Cdd:PRK12646  407 SKEMFLdaLTQTGQLSQfsliSMIIIVFIGviaSIFTFTYALYMVKEVFWGKYDSKVFTKKNIH--EPWLFSLPSLILMV 484


                  ..
gi 1067529799 218 LM 219
Cdd:PRK12646  485 LV 486
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-98 2.90e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 2.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLnpLTTNMFYPFI----------ILATWG---IIMTSTICLRQTDLKSLIAYSSVSHMGL 67
Cdd:PRK08668  233 VLSGQLSKLGAYGFLLVLYVL--PGTKLFSEFGtyrgvplfnyILAWLGnisIIVGTLMAILQEDIKKLIAYSSVANGGY 310

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1067529799  68 VIAASLIQTQWSLTGAIVLMVAHGLTSSMLF 98
Cdd:PRK08668  311 ILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 21-94 3.85e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 44.34  E-value: 3.85e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1067529799  21 LNPLTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTS 94
Cdd:COG1007   261 FPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-221 1.46e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 42.44  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNplTTNMFYPFIIL-ATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQws 79
Cdd:MTH00207  216 VHSSTLVTAGVFLLIRFYPFLS--STYWFNPALLLtASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMP-- 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  80 lTGAIVLMVAHGLTSSMLFCLANTN-YERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTST-- 156
Cdd:MTH00207  292 -KLALFHLITHALFKALLFVCAGSLiHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSlf 370

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067529799 157 FNWSNLTIIMTGLGTLLTATYSLHMFLMTQRGKLtthmiSTEPTHTREHLLMALhTIPMLLLMLK 221
Cdd:MTH00207  371 YPHNSLMILMIFLATALTAAYSTRFTLAVLWSPN-----SSSPYHHLEDEDKSL-TTPMLLLTLG 429
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
33-166 3.20e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.56  E-value: 3.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  33 IILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRT 112
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1067529799 113 LLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTF--NWSNLTIIM 166
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMqaNMPELAIIM 405
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 32-226 4.57e-04

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 41.09  E-value: 4.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  32 FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTSSMLF-CLANT-NYERTH 109
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFgVLSLLrSYKDEW 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799 110 SRTLLLARGLQLILPLMSSWWLLaNLMNMA-LPPTINITGELLIMTSTFNWSNLTIIMTG-LGTLLTATYSLHM---FLM 184
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILI-FMFSLAgIPPLAGFFGKFYVFFALLKSGLYWLAVIAvLTSVIGAFYYLRVvkvMYF 430

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1067529799 185 TQRGKltthMISTEPTHTREHLLMALHTIPMLLLMLKPQLIM 226
Cdd:TIGR01770 431 DKPER----RIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-142 1.38e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.57  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   1 VLAAILLKLGGYGIIRIAPMLNPlTTNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 80
Cdd:PRK12665  246 VFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGL 324

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1067529799  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANlMNMA-LPP 142
Cdd:PRK12665  325 SGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPA-LNLGgIPP 386
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
3-227 1.63e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   3 AAILLKLGGYGIIRIAPMLNPLTTNMFYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 81
Cdd:PRK12663  245 AALLTKVGIYALIRVFTLLFPQERELLHPLLaTMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIN 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  82 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWSN 161
Cdd:PRK12663  325 GAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGA 404

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1067529799 162 LTIIMTGLGTLLTATYSL-HMFLMTQRGKLTTHMISTEPTHTREHLLMALHTIPMLLLMLKPQLIMG 227
Cdd:PRK12663  405 YILLALMLITSLITMYSLfRIFFLAYWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAMGIAAEPLLN 471
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 19-184 5.63e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 37.17  E-value: 5.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  19 PMLNPLTtNMFYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQtqwSLTGAIVLMVAHGLTSSMLF 98
Cdd:MTH00144  135 SNFLDLY-WLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHG---SWLMWMYFLIYIVSSGFLFF 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  99 CLANTNYERTHSRTLLLARglqlilPLMSSWWLLANLMNMALPPTINITGELLIMTSTFNWSNLTIIMTG-LGTLLTATY 177
Cdd:MTH00144  211 SLWSGDSGSMKDLGSLKPS------YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLlLGSLISLFF 284


                  ....*..
gi 1067529799 178 SLHMFLM 184
Cdd:MTH00144  285 YLSVFFS 291
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 6-181 5.93e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 37.70  E-value: 5.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799   6 LLKLGGYGIIRIAPMLNPLTTNMFYPFIIlATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAA-SLIQTQWsltgAI 84
Cdd:MTH00209  217 LVTAGVYLLIRFFPSLFSSPFFSMSLLLL-GSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSlGLNQPEL----AF 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067529799  85 VLMVAHGLTSSMLF-CLANTNYERTHSRTLLLARGLQLILPLMSSWWLLANLMNMALPPTINITGELLIMTSTF--NWSN 161
Cdd:MTH00209  292 FHLITHALFKALLFiCAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLesNMPI 371

                         170       180
                  ....*....|....*....|
gi 1067529799 162 LTIIMTGLGTLLTATYSLHM 181
Cdd:MTH00209  372 MTLILMFLSTSLTAAYSMRL 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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