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Conserved domains on  [gi|1063733540|ref|NP_001331491|]
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XS domain-containing protein / XS zinc finger domain-containing protein-like protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 301-410 3.12e-45

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


:

Pssm-ID: 409710  Cd Length: 107  Bit Score: 155.98  E-value: 3.12e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063733540 301 IVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMG 380
Cdd:cd12266     1 IVWPWMGIVVNTPTTKDDNRKMEGGSNKELLERLIKFGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFEVDG 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063733540 381 LDRIAWgqkRSMFSGGVRQLYGFLATKQDL 410
Cdd:cd12266    81 HGKKDW---RNKKGGRKSKLYGWLARADDY 107
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 228-265 2.94e-10

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


:

Pssm-ID: 251981  Cd Length: 43  Bit Score: 55.60  E-value: 2.94e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1063733540 228 CPACQNGPGAIdwYNLHPLLAHARTKG-------ARRVKLHRELA 265
Cdd:pfam03470   1 CPFCPGKKKQD--YKYKDLLQHASGVGassnrrsAKEKASHRALA 43
 
Name Accession Description Interval E-value
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 301-410 3.12e-45

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 155.98  E-value: 3.12e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063733540 301 IVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMG 380
Cdd:cd12266     1 IVWPWMGIVVNTPTTKDDNRKMEGGSNKELLERLIKFGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFEVDG 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063733540 381 LDRIAWgqkRSMFSGGVRQLYGFLATKQDL 410
Cdd:cd12266    81 HGKKDW---RNKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 298-411 1.60e-41

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 146.16  E-value: 1.60e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063733540 298 DYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELA 377
Cdd:pfam03468   1 DELFVWPWMGIVVNIPTEQDEDGRWVGMSGEELKDKLSRFNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKHFE 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1063733540 378 EMGLDRIAWGQKRSMFSGgvRQLYGFLATKQDLD 411
Cdd:pfam03468  81 AQGHGKKDWGGKRNRGSG--SKLYGWVARADDYN 112
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 228-265 2.94e-10

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 55.60  E-value: 2.94e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1063733540 228 CPACQNGPGAIdwYNLHPLLAHARTKG-------ARRVKLHRELA 265
Cdd:pfam03470   1 CPFCPGKKKQD--YKYKDLLQHASGVGassnrrsAKEKASHRALA 43
 
Name Accession Description Interval E-value
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 301-410 3.12e-45

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 155.98  E-value: 3.12e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063733540 301 IVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMG 380
Cdd:cd12266     1 IVWPWMGIVVNTPTTKDDNRKMEGGSNKELLERLIKFGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFEVDG 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063733540 381 LDRIAWgqkRSMFSGGVRQLYGFLATKQDL 410
Cdd:cd12266    81 HGKKDW---RNKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 298-411 1.60e-41

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 146.16  E-value: 1.60e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063733540 298 DYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELA 377
Cdd:pfam03468   1 DELFVWPWMGIVVNIPTEQDEDGRWVGMSGEELKDKLSRFNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKHFE 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1063733540 378 EMGLDRIAWGQKRSMFSGgvRQLYGFLATKQDLD 411
Cdd:pfam03468  81 AQGHGKKDWGGKRNRGSG--SKLYGWVARADDYN 112
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 228-265 2.94e-10

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 55.60  E-value: 2.94e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1063733540 228 CPACQNGPGAIdwYNLHPLLAHARTKG-------ARRVKLHRELA 265
Cdd:pfam03470   1 CPFCPGKKKQD--YKYKDLLQHASGVGassnrrsAKEKASHRALA 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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