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Conserved domains on  [gi|106364221|dbj|BAE95183|]
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S locus protein 11 [Brassica rapa]

Protein Classification

SCRL domain-containing protein( domain architecture ID 10536388)

SCRL domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SCRL pfam06876
Plant self-incompatibility response (SCRL) protein; This family consists of several Plant ...
 14-78 5.16e-19

Plant self-incompatibility response (SCRL) protein; This family consists of several Plant self-incompatibility response (SCRL) proteins. The male component of the self-incompatibility response in Brassica has been shown to be encoded by the S locus cysteine-rich gene (SCR). SCR is related, at the sequence level, to the pollen coat protein (PCP) gene family whose members encode small, cysteine-rich proteins located in the proteo-lipidic surface layer (tryphine) of Brassica pollen grains.


:

Pssm-ID: 369118  Cd Length: 67  Bit Score: 72.81  E-value: 5.16e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 106364221  14 FIVSGHIQEVEANLMNPCDDIFGMEGQCG--GPKTCEKLYSKGMDKRPPRCECTNSGKNTYSCVCKL 78
Cdd:pfam06876  1 FIVSSHVQEVEANLMKRCTRKQTFPGKCGndGNKTCEKDFKKKVKKKPFSCTCTPSHKGKRLCTCKR 67
 
Name Accession Description Interval E-value
SCRL pfam06876
Plant self-incompatibility response (SCRL) protein; This family consists of several Plant ...
 14-78 5.16e-19

Plant self-incompatibility response (SCRL) protein; This family consists of several Plant self-incompatibility response (SCRL) proteins. The male component of the self-incompatibility response in Brassica has been shown to be encoded by the S locus cysteine-rich gene (SCR). SCR is related, at the sequence level, to the pollen coat protein (PCP) gene family whose members encode small, cysteine-rich proteins located in the proteo-lipidic surface layer (tryphine) of Brassica pollen grains.


Pssm-ID: 369118  Cd Length: 67  Bit Score: 72.81  E-value: 5.16e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 106364221  14 FIVSGHIQEVEANLMNPCDDIFGMEGQCG--GPKTCEKLYSKGMDKRPPRCECTNSGKNTYSCVCKL 78
Cdd:pfam06876  1 FIVSSHVQEVEANLMKRCTRKQTFPGKCGndGNKTCEKDFKKKVKKKPFSCTCTPSHKGKRLCTCKR 67
 
Name Accession Description Interval E-value
SCRL pfam06876
Plant self-incompatibility response (SCRL) protein; This family consists of several Plant ...
 14-78 5.16e-19

Plant self-incompatibility response (SCRL) protein; This family consists of several Plant self-incompatibility response (SCRL) proteins. The male component of the self-incompatibility response in Brassica has been shown to be encoded by the S locus cysteine-rich gene (SCR). SCR is related, at the sequence level, to the pollen coat protein (PCP) gene family whose members encode small, cysteine-rich proteins located in the proteo-lipidic surface layer (tryphine) of Brassica pollen grains.


Pssm-ID: 369118  Cd Length: 67  Bit Score: 72.81  E-value: 5.16e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 106364221  14 FIVSGHIQEVEANLMNPCDDIFGMEGQCG--GPKTCEKLYSKGMDKRPPRCECTNSGKNTYSCVCKL 78
Cdd:pfam06876  1 FIVSSHVQEVEANLMKRCTRKQTFPGKCGndGNKTCEKDFKKKVKKKPFSCTCTPSHKGKRLCTCKR 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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