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Conserved domains on  [gi|1063462850|ref|XP_007049036|]
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PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2 [Theobroma cacao]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-845 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 939.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850   1 MEIDLEVPSKEQEKlipGSNETDDARDAEDEIDVEDNDENPPTTSEHAEEACEpnliesftgcEDQVDVTTVEADVC--- 77
Cdd:PLN03097    1 MDIDLRLPSGDHDK---EDEEPNGVDNMLSEVKLHNGDMEIGNVVDVAEEVLS----------IDGGDMNSPTGELVefk 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850  78 EGTILEPQNGLEFESKEAAYSFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRESSTILN----------P 147
Cdd:PLN03097   68 EDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrprarqtkqdP 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 148 ------RSCPKTGCKARMHMKRRQDEKWIIHSFVKEHNHEICPDD--------FYYAIRGRNKQSGAVACQK-------- 205
Cdd:PLN03097  148 engtgrRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQavseqtrkMYAAMARQFAEYKNVVGLKndskssfd 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 206 KGLQLALDEKDVELMLDHFMCMQDENPDFFYAIDLDNEKSARSVFWVDAKGRHSYSHFGDVVFFDTFFIRNKYKIPYIPI 285
Cdd:PLN03097  228 KGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 286 IGVNHHFQYMLLGCALIGDHAMSAFVWLMRSWLKAMGGQAPKVIITDQEKVLNEAVVDVFSDSRHCFCLWHVLSKFSENL 365
Cdd:PLN03097  308 VGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENL 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 366 GCIMNQNESFMTKFNKCIYRSWTHEQFEKRWCRMVDKFELKEHEWVLSLYNDRKKWVPTYMRDTFLAGISTTERSKSFAS 445
Cdd:PLN03097  388 GQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINA 467

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 446 FFDKFMHKEATFNEFIEQLKSFSLELYEVEAKADFETQNKQPELRSLSAFEKQMSMIYTDTIFKKFQVEILGVVSCHLQK 525
Cdd:PLN03097  468 FFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKM 547

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 526 ESEDEDTVVFRVDDFEERQNFFVAWNKREFDICCLCRSFEYRGFLCKHAILVLQMSGVSDIPSRYILKRWTKEAKIRENL 605
Cdd:PLN03097  548 ESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLL 627

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 606 GEISNRLHFRVQRFNDLCKRAIKLGVQGCLSEEAYTIALQALEEALKHCVGVNNSAKSVFEPNILSVHGFLEIEAENRWN 685
Cdd:PLN03097  628 GEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSR 707

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 686 TTAKSSKKKKMYKRRKVHSELEEVATGqdncqqmissrahtldgcyvPQQDMQGMD-VGSRAPTLDGYYSSQQNIQRMGQ 764
Cdd:PLN03097  708 SMTKTNKKKNPTKKRKVNSEQEVTTVA--------------------AQDSLQQMDkLSSRAVALESYYGTQQSVQGMVQ 767

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 765 LNSMSPFRDGYYSNQQSMLGLGQLHSL-PARVNQYGNRQGMQGLGQLG-FRAPAMQGFDIPDslqdeDRSMDSTHFHSIA 842
Cdd:PLN03097  768 LNLMAPTRDNYYGNQQTIQGLGQLNSIaPSHDGYYGTQQSIHGLGQMDfFRTPAGFSYDIRD-----DPNVRTAQLHDDA 842


                  ...
gi 1063462850 843 SKH 845
Cdd:PLN03097  843 SRH 845
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-845 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 939.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850   1 MEIDLEVPSKEQEKlipGSNETDDARDAEDEIDVEDNDENPPTTSEHAEEACEpnliesftgcEDQVDVTTVEADVC--- 77
Cdd:PLN03097    1 MDIDLRLPSGDHDK---EDEEPNGVDNMLSEVKLHNGDMEIGNVVDVAEEVLS----------IDGGDMNSPTGELVefk 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850  78 EGTILEPQNGLEFESKEAAYSFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRESSTILN----------P 147
Cdd:PLN03097   68 EDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrprarqtkqdP 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 148 ------RSCPKTGCKARMHMKRRQDEKWIIHSFVKEHNHEICPDD--------FYYAIRGRNKQSGAVACQK-------- 205
Cdd:PLN03097  148 engtgrRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQavseqtrkMYAAMARQFAEYKNVVGLKndskssfd 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 206 KGLQLALDEKDVELMLDHFMCMQDENPDFFYAIDLDNEKSARSVFWVDAKGRHSYSHFGDVVFFDTFFIRNKYKIPYIPI 285
Cdd:PLN03097  228 KGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 286 IGVNHHFQYMLLGCALIGDHAMSAFVWLMRSWLKAMGGQAPKVIITDQEKVLNEAVVDVFSDSRHCFCLWHVLSKFSENL 365
Cdd:PLN03097  308 VGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENL 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 366 GCIMNQNESFMTKFNKCIYRSWTHEQFEKRWCRMVDKFELKEHEWVLSLYNDRKKWVPTYMRDTFLAGISTTERSKSFAS 445
Cdd:PLN03097  388 GQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINA 467

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 446 FFDKFMHKEATFNEFIEQLKSFSLELYEVEAKADFETQNKQPELRSLSAFEKQMSMIYTDTIFKKFQVEILGVVSCHLQK 525
Cdd:PLN03097  468 FFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKM 547

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 526 ESEDEDTVVFRVDDFEERQNFFVAWNKREFDICCLCRSFEYRGFLCKHAILVLQMSGVSDIPSRYILKRWTKEAKIRENL 605
Cdd:PLN03097  548 ESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLL 627

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 606 GEISNRLHFRVQRFNDLCKRAIKLGVQGCLSEEAYTIALQALEEALKHCVGVNNSAKSVFEPNILSVHGFLEIEAENRWN 685
Cdd:PLN03097  628 GEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSR 707

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 686 TTAKSSKKKKMYKRRKVHSELEEVATGqdncqqmissrahtldgcyvPQQDMQGMD-VGSRAPTLDGYYSSQQNIQRMGQ 764
Cdd:PLN03097  708 SMTKTNKKKNPTKKRKVNSEQEVTTVA--------------------AQDSLQQMDkLSSRAVALESYYGTQQSVQGMVQ 767

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 765 LNSMSPFRDGYYSNQQSMLGLGQLHSL-PARVNQYGNRQGMQGLGQLG-FRAPAMQGFDIPDslqdeDRSMDSTHFHSIA 842
Cdd:PLN03097  768 LNLMAPTRDNYYGNQQTIQGLGQLNSIaPSHDGYYGTQQSIHGLGQMDfFRTPAGFSYDIRD-----DPNVRTAQLHDDA 842


                  ...
gi 1063462850 843 SKH 845
Cdd:PLN03097  843 SRH 845
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 98-184 6.08e-28

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 107.81  E-value: 6.08e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850  98 SFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRES---STILNPRSCPKTGCKARMHMKRRQDEKWIIHSF 174
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKqrtGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 1063462850 175 VKEHNHEICP 184
Cdd:pfam03101  81 VKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
558-584 1.71e-04

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 39.46  E-value: 1.71e-04
                           10        20
                   ....*....|....*....|....*..
gi 1063462850  558 CCLCRSFEYRGFLCKHAILVLQMSGVS 584
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-845 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 939.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850   1 MEIDLEVPSKEQEKlipGSNETDDARDAEDEIDVEDNDENPPTTSEHAEEACEpnliesftgcEDQVDVTTVEADVC--- 77
Cdd:PLN03097    1 MDIDLRLPSGDHDK---EDEEPNGVDNMLSEVKLHNGDMEIGNVVDVAEEVLS----------IDGGDMNSPTGELVefk 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850  78 EGTILEPQNGLEFESKEAAYSFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRESSTILN----------P 147
Cdd:PLN03097   68 EDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrprarqtkqdP 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 148 ------RSCPKTGCKARMHMKRRQDEKWIIHSFVKEHNHEICPDD--------FYYAIRGRNKQSGAVACQK-------- 205
Cdd:PLN03097  148 engtgrRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQavseqtrkMYAAMARQFAEYKNVVGLKndskssfd 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 206 KGLQLALDEKDVELMLDHFMCMQDENPDFFYAIDLDNEKSARSVFWVDAKGRHSYSHFGDVVFFDTFFIRNKYKIPYIPI 285
Cdd:PLN03097  228 KGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 286 IGVNHHFQYMLLGCALIGDHAMSAFVWLMRSWLKAMGGQAPKVIITDQEKVLNEAVVDVFSDSRHCFCLWHVLSKFSENL 365
Cdd:PLN03097  308 VGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENL 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 366 GCIMNQNESFMTKFNKCIYRSWTHEQFEKRWCRMVDKFELKEHEWVLSLYNDRKKWVPTYMRDTFLAGISTTERSKSFAS 445
Cdd:PLN03097  388 GQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINA 467

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 446 FFDKFMHKEATFNEFIEQLKSFSLELYEVEAKADFETQNKQPELRSLSAFEKQMSMIYTDTIFKKFQVEILGVVSCHLQK 525
Cdd:PLN03097  468 FFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKM 547

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 526 ESEDEDTVVFRVDDFEERQNFFVAWNKREFDICCLCRSFEYRGFLCKHAILVLQMSGVSDIPSRYILKRWTKEAKIRENL 605
Cdd:PLN03097  548 ESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLL 627

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 606 GEISNRLHFRVQRFNDLCKRAIKLGVQGCLSEEAYTIALQALEEALKHCVGVNNSAKSVFEPNILSVHGFLEIEAENRWN 685
Cdd:PLN03097  628 GEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSR 707

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 686 TTAKSSKKKKMYKRRKVHSELEEVATGqdncqqmissrahtldgcyvPQQDMQGMD-VGSRAPTLDGYYSSQQNIQRMGQ 764
Cdd:PLN03097  708 SMTKTNKKKNPTKKRKVNSEQEVTTVA--------------------AQDSLQQMDkLSSRAVALESYYGTQQSVQGMVQ 767

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 765 LNSMSPFRDGYYSNQQSMLGLGQLHSL-PARVNQYGNRQGMQGLGQLG-FRAPAMQGFDIPDslqdeDRSMDSTHFHSIA 842
Cdd:PLN03097  768 LNLMAPTRDNYYGNQQTIQGLGQLNSIaPSHDGYYGTQQSIHGLGQMDfFRTPAGFSYDIRD-----DPNVRTAQLHDDA 842


                  ...
gi 1063462850 843 SKH 845
Cdd:PLN03097  843 SRH 845
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 98-184 6.08e-28

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 107.81  E-value: 6.08e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850  98 SFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRES---STILNPRSCPKTGCKARMHMKRRQDEKWIIHSF 174
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKqrtGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 1063462850 175 VKEHNHEICP 184
Cdd:pfam03101  81 VKEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 266-360 1.65e-22

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 92.71  E-value: 1.65e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063462850 266 VVFFDTFFIRNKYKIPYIPIIGVNHHFQYMLLGCALIGDHAMSAFVWLM---RSWLKAMGGQAPKVIITDQEKVLNEAVV 342
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAIN 80

                          90
                  ....*....|....*...
gi 1063462850 343 DVFSDSRHCFCLWHVLSK 360
Cdd:pfam10551  81 LVFPEAQHRLCIFHINKN 98
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 546-582 1.74e-05

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 42.41  E-value: 1.74e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063462850 546 FFV-AWNKREFDICCLCRSFEYRGFLCKHAILVLQMSG 582
Cdd:pfam04434   1 YRVqLDLDGLEKASCSCPDFQLNGIPCKHALAVLLALG 38
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
558-584 1.71e-04

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 39.46  E-value: 1.71e-04
                           10        20
                   ....*....|....*....|....*..
gi 1063462850  558 CCLCRSFEYRGFLCKHAILVLQMSGVS 584
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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