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Conserved domains on  [gi|1063302260|gb|AOO19607|]
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cytochrome b, partial (mitochondrion) [Gerbillus amoenus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 613.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00100   13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00100   93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 613.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00100   13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00100   93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-281 1.36e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 331.37  E-value: 1.36e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   4 HSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLF 83
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  84 IHIGRGIYYGSY-----IfqeTWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSV 158
Cdd:COG1290   105 LHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 159 DKATLTRFFAFH-FILPFIIAALVLVHLLFLHETGSNNPLGI----NSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLF 233
Cdd:COG1290   182 GDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFF 261

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063302260 234 FPDllGDPDNYTPANPLNTPPHIKPEWYFPFAYAILRSIP--NKLGGVLA 281
Cdd:COG1290   262 FPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIA 309
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-194 4.33e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 266.93  E-value: 4.33e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYI--FQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSV 158
Cdd:cd00284    85 MLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1063302260 159 DKATLTRFFAFHFILPFIIAALVLVHLLFLHETGSN 194
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
6-192 3.30e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 251.53  E-value: 3.30e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   6 FIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLFIH 85
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  86 IGRGIYYG--SYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKATL 163
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1063302260 164 TRFFAFHFILPFIIAALVLVHLLFLHETG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 246-281 1.23e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.48  E-value: 1.23e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063302260 246 PANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLA 281
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 613.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00100   13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00100   93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325
CYTB MTH00119
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 568.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00119   14 IINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00119   94 CIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00119  174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00119  254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326
CYTB MTH00131
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 550.02  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00131   13 IANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00131   93 CIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDN 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00131  173 ATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGD 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00131  253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325
CYTB MTH00074
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 546.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00074   14 IINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00074   94 CIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDK 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00074  174 ATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGD 253

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00074  254 PDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILF 326
CYTB MTH00191
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 533.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00191   10 IVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00191   90 CIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDN 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00191  170 ATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGD 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00191  250 PENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVF 322
CYTB MTH00156
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 532.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00156    3 IINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00156   83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00156  163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00156  243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILF 315
CYTB MTH00145
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 507.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00145   14 VVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00145   94 CIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00145  174 ATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGD 253

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00145  254 PENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLF 326
CYTB MTH00034
cytochrome b; Validated
 1-313 7.05e-176

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 491.53  E-value: 7.05e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00034   13 ILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00034   93 CLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDN 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00034  173 ATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALND 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00034  253 PENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325
CYTB MTH00016
cytochrome b; Validated
 1-313 1.68e-171

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 480.33  E-value: 1.68e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00016   14 IMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00016   94 CLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00016  174 ATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGD 253

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00016  254 PENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILF 326
CYTB MTH00224
cytochrome b; Provisional
 1-313 7.49e-151

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 428.19  E-value: 7.49e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00224   14 ILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00224   94 FIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00224  174 ATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTD 253

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00224  254 PENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLF 326
CYTB MTH00022
cytochrome b; Validated
 2-313 1.62e-148

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 422.19  E-value: 1.62e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   2 VNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFIC 81
Cdd:MTH00022   13 VNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLC 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  82 LFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKA 161
Cdd:MTH00022   93 LYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 162 TLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGDP 241
Cdd:MTH00022  173 TLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDP 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063302260 242 DNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00022  253 ENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324
CYTB MTH00053
cytochrome b; Provisional
 1-313 3.46e-147

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 418.73  E-value: 3.46e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00053   14 LVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00053   94 CVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00053  174 ATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGD 253

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00053  254 AENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILF 326
CYTB MTH00033
cytochrome b; Provisional
 7-313 1.79e-114

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 335.75  E-value: 1.79e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   7 IDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLFIHI 86
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  87 GRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKATLTRF 166
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 167 FAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVL--FFPDLLGDPDNY 244
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063302260 245 TPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFF 324
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-281 1.36e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 331.37  E-value: 1.36e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   4 HSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLF 83
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  84 IHIGRGIYYGSY-----IfqeTWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSV 158
Cdd:COG1290   105 LHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 159 DKATLTRFFAFH-FILPFIIAALVLVHLLFLHETGSNNPLGI----NSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLF 233
Cdd:COG1290   182 GDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFF 261

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063302260 234 FPDllGDPDNYTPANPLNTPPHIKPEWYFPFAYAILRSIP--NKLGGVLA 281
Cdd:COG1290   262 FPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIA 309
CYTB MTH00086
cytochrome b; Provisional
 1-281 2.39e-108

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 319.19  E-value: 2.39e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00086    2 FVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDK 160
Cdd:MTH00086   82 FLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 161 ATLTRFFAFHFILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGvIIFILFFTMMVLFFPDLLGD 240
Cdd:MTH00086  162 ATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGD 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1063302260 241 PDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLA 281
Cdd:MTH00086  241 PEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIA 281
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-194 4.33e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 266.93  E-value: 4.33e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   1 MVNHSFIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  81 CLFIHIGRGIYYGSYI--FQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSV 158
Cdd:cd00284    85 MLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1063302260 159 DKATLTRFFAFHFILPFIIAALVLVHLLFLHETGSN 194
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
6-192 3.30e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 251.53  E-value: 3.30e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   6 FIDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLFIH 85
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  86 IGRGIYYG--SYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKATL 163
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1063302260 164 TRFFAFHFILPFIIAALVLVHLLFLHETG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 7-280 2.07e-81

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 250.29  E-value: 2.07e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260   7 IDLPTPPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLFIHI 86
Cdd:MTH00046   10 IDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  87 GRGIYYGSYIFQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKATLTRF 166
Cdd:MTH00046   90 GRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 167 FAFHFILPFIIAALVLVHLLFLHETGSNNPLGI-NSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGDPDNYT 245
Cdd:MTH00046  170 FSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1063302260 246 PANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVL 280
Cdd:MTH00046  250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV 284
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
76-241 1.69e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 144.31  E-value: 1.69e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  76 SMFFICLFIHIGRGIYYGSYIF--QETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIW 153
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 154 GGFSVDKATLTRFFAFHF-ILPFIIAALVLVHLLFLHETGSNNPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVL 232
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1063302260 233 FFPDLLGDP 241
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 21-179 1.87e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 140.62  E-value: 1.87e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  21 FGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLFIHIGRGIYYGSYI--FQ 98
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  99 ETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKATLTRFFAFH-FILPFII 177
Cdd:PRK03735  124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203


                  ..
gi 1063302260 178 AA 179
Cdd:PRK03735  204 AV 205
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 195-313 2.75e-38

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 132.77  E-value: 2.75e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260 195 NPLGINSNADKIPFHPYYTVKDFLGVIIFILFFTMMVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFPFAYAILRSIPN 274
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1063302260 275 KLGGVLALVLSILILALLPLIHTSKQRSlMFRPISQTLY 313
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAF 118
petB CHL00070
cytochrome b6
 12-197 6.91e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.99  E-value: 6.91e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  12 PPNISSWWNFGSLLGICLVIQITTGLFLAMHYTADTTTAFSSVSHICRDVNYGWLIRYMHANGASMFFICLFIHIGRGIY 91
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063302260  92 YGSYI--FQETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTIVEWIWGGFSVDKATLTRFFAF 169
Cdd:CHL00070  107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1063302260 170 H-FILPFIIAALVLVHLLFLHETGSNNPL 197
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
246-313 6.04e-20

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 82.91  E-value: 6.04e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063302260 246 PANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLALVLSILILALLPLIHTSKQRSLMFRPISQTLY 313
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFF 68
petD CHL00058
cytochrome b6/f complex subunit IV
 246-281 1.59e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.08  E-value: 1.59e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063302260 246 PANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLA 281
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLL 100
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 246-281 1.42e-07

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 50.18  E-value: 1.42e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063302260 246 PANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLA 281
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVM 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 246-281 1.23e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.48  E-value: 1.23e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063302260 246 PANPLNTPPHIKPEWYFPFAYAILRSIPNKLGGVLA 281
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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